other hairpins
novel_lenNOK_cloningHIGH_shortStem_nonpairedHIGH_bulgeHIGH (44 loci)
block2338663 [novel_lenNOK_cloningHIGH_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.543 | no | no | 0.32/0.39 | 18/22/0.03 | 0.0 | 0.0 | 50 | 0 | 2 | 0 | 4 | 5 | 3arm | 1 | nd | 0.39 | 4 | 64 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------CUUUGGU-------------- | 56 | miR-9 | |
| seed | ------------------------------------------------UUUGGUU------------- | 8 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ----------------------------------------------CCTTTGGTTATCTAGAGT---- | 18 | 32 | 18 | |
| -----------------------------------------------CTTTGGTTATCTAGAGTTA-- | 19 | 3 | 3 | |
| ----------------------------------------------CCTTTGGTTATCTAGAGTT--- | 19 | 3 | 1 | |
| ----------------------------------------------CCTTTGGTTATCTAGAGTTAGA | 22 | 2 | - | |
| -----------------------------------------------CTTTGGTTATCTAGAGTT--- | 18 | 2 | - | |
| rat | ctagcaagccacctgtctaccgccacttaacttattacacctgagtCCTTTGGTTATCTAGAGTtaga | |||
| ******************************************************************** | ||||
| rat | (((((..........((((..((((....(((((.......)))))....))))....))))))))). | 0.520 -8.80 | ||
| rat | chromosome:8:90870835:90870902:-1 | intergenic |
block2353856 [novel_lenNOK_cloningHIGH_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.510 | no | no | 0.50/0.53 | 18/19/0.00 | 0.0 | 0.0 | 47 | 0 | 9 | 0 | 3 | 13 | 5arm | 1 | nd | 0.33 | 4 | 57 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | ----ACUGGCC--------------------------------------------------------------------- | 57 | miR-193 | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| ---AACTGGCCCACAAAGGTT----------------------------------------------------------- | 18 | 11 | 15 | 1 | 4 | 6 | 8 | 1 | 3 | 7 | |
| ---AACTGGCCCACAAAGGTTG---------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | - | |
| rat | gtgAACTGGCCCACAAAGGTTgaggtgaccgcgaaccatcccctcctatcgtatggcacagtctgcttttagcagtttac | ||||||||||
| ******************************************************************************** | |||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016056 ENSRNOG00000011936 Abhd14a | ||||||||||
| rat | (((((((.((....((((((.((.(((.((((((..............))))..)))))..)).)))))).))))))))) | 0.440 -18.74 | |||||||||
| rat | chromosome:8:111588425:111588504:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000016056|ENSRNOG00000011936 ## ENSRNOG00000011936|protein_coding|Abhd14a|Abhydrolase domain-containing protein 14A (EC 3.-.-.-). [Source:UniProtKB/Swiss-Prot;Acc:Q5I0C4] |
block2355795 [novel_lenNOK_cloningHIGH_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.257 | no | no | 0.53/0.56 | 18/19/0.00 | 0.0 | 0.2 | 70 | 0 | 10 | 0 | 1 | 45 | 3arm | 1 | 97 | 0.39 | 4 | 85 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------------------------------------------------------------------GGAGACU------------ | 85 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------------------------------------------TGGAGACTCCTGTGTCCT-- | 18 | 11 | 7 | 5 | 3 | 4 | 1 | 3 | 13 | 9 | 10 | |
| ----------------------------------------------------------------------------------------------------TGGAGACTCCTGTGTCCTT- | 19 | 2 | - | 1 | 1 | 1 | - | 5 | 2 | 1 | 6 | |
| rat | caaggtgaggagggccaacctcagagccatccctaggttgctgtctggagccgtgggctagccgtgaagaattttaggtaccagggaagagtcagaggctTGGAGACTCCTGTGTCCTTc | |||||||||||
| ************************************************************************************************************************ | ||||||||||||
| >>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000050344 ENSRNOG00000033378 A2VCX0_RAT | |||||||||||
| >>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043825 ENSRNOG00000033378 A2VCX0_RAT | |||||||||||
| rat | .((((..(((((..((((((((.((....(((((.((.((((.(((((((((...))))..))).)).........)))))))))))....)).)))).))))...)))))....)))). | 0.930 -40.30 | ||||||||||
| rat | chromosome:8:113338477:113338596:-1 | Same_strand|Intronic_coding|ENSRNOT00000043825|ENSRNOG00000033378 ## ENSRNOG00000033378|protein_coding|A2VCX0_RAT|Putative uncharacterized protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:A2VCX0] |
block2539875 [novel_lenNOK_cloningHIGH_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.168 | no | no | 0.58/0.63 | 18/20/0.01 | 0.0 | 0.0 | 73 | 0 | 10 | 0 | 3 | 12 | 5arm | 1 | nd | 0.44 | 4 | 106 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ----CCCCCAA------------------------------------------------------------------------------------------ | 105 | novel | |||||||||
| seed | -----CCCCAAC----------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---TCCCCCAACCCTTGGCAA-------------------------------------------------------------------------------- | 18 | 17 | 10 | 3 | 3 | 27 | 19 | 4 | 8 | 3 | 3 | |
| ---TCCCCCAACCCTTGGCAAT------------------------------------------------------------------------------- | 19 | 1 | - | - | - | 4 | 1 | 1 | - | - | - | |
| ---TCCCCCAACCCTTGGCAATG------------------------------------------------------------------------------ | 20 | - | - | - | - | 1 | - | - | - | - | - | |
| ----CCCCCAACCCTTGGCAATG------------------------------------------------------------------------------ | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | taaTCCCCCAACCCTTGGCAAtggtatcagggccttcatatactaagcacacactttgccactgagctggcttcttctcctagggttatatataggattgc | |||||||||||
| ***************************************************************************************************** | ||||||||||||
| rat | ((((((...((((((.((....(((.(((((((........................))).))))....)))......)).)))))).......)))))). | 0.800 -22.26 | ||||||||||
| rat | chromosome:9:92649364:92649464:-1 | intergenic |
block2644084 [novel_lenNOK_cloningHIGH_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.025 | no | no | 0.47/0.55 | 19/21/0.07 | 0.0 | 0.0 | 53 | 0 | 8 | 0 | 1 | 3 | 5arm | 3 | nd | 0.32 | 4 | 75 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | --GAGCAAG---------------------------------------------------------------------------------------- | 69 | novel | |||||||
| seed | ---AGCAAGA--------------------------------------------------------------------------------------- | 3 | novel | |||||||
| seed | -UGAGCAA----------------------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | ----GCAAGAC-------------------------------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| -TGAGCAAGACACTCTCAGG----------------------------------------------------------------------------- | 19 | 5 | 2 | 1 | 1 | 1 | 1 | 53 | 3 | |
| --GAGCAAGACACTCTCAGGCA--------------------------------------------------------------------------- | 20 | - | - | 1 | - | - | - | 2 | - | |
| TTGAGCAAGACACTCTCAG------------------------------------------------------------------------------ | 19 | - | - | - | - | - | - | 2 | - | |
| ---AGCAAGACACTCTCAGGCA--------------------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | - | - | |
| -TGAGCAAGACACTCTCAGGC---------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| -TGAGCAAGACACTCTCAGGCA--------------------------------------------------------------------------- | 21 | - | - | - | - | - | - | 1 | - | |
| rat | tTGAGCAAGACACTCTCAGGcattcacacacacacacacacacacacacacacacacacacacacacacacacatttctgttcctgagactggctta | |||||||||
| ************************************************************************************************* | ||||||||||
| rat | .(((((.((....(((((((.((........................................................)).))))))))).))))) | 1.000 -11.54 | ||||||||
| rat | chromosome:9:104948426:104948522:1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH (44 loci)
sblock10002 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.389 | no | no | 0.44/0.55 | 18/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 20 35 | 5 -1 | 5arm 3arm | 25 130 | nd nd | 0.36 0.39 | 2 6 | 2 | 2 | -6 | -9 |
| reads | miRBase family seed | |||
| seed | ---------------------UCUUCUU---------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------GACAAGA--------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S2 | |||
| --------------------ATCTTCTTGTGCAGTGCCAGCC-------------------------------------------------------------- | 22 | - | 1 | |
| ---------------------------------------------------AGACAAGATGGTGAAGGT----------------------------------- | 18 | 1 | - | |
| rat | cctgctccagagacagcctcATCTTCTTGTGCAGTGCCAGCCttgtctcatAGACAAGATGGTGAAGGTtggtgtgaatggatttggccgtattgggcgcctgg | |||
| ******************************************************************************************************** | ||||
| ............................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000059558 ENSRNOG00000038964 | |||
| rat | ((.(((((((..((.(((..((((..((..((..(((((..((((((.....)))))).))))).......))..))..))))..))).)).))))).))..)) | 0.960 -31.90 | ||
| rat | chromosome:6:75177201:75177304:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000059558|ENSRNOG00000038964 ## intergenic ## ENSRNOG00000038964|protein_coding|| |
sblock10723 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.065 | no | no | 0.30/0.56 | 18/20/0.50 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 16 28 35 25 | 16 3 -5 13 | 5arm 5arm 5arm_loop_3arm 3arm | 9 10 11 11 | nd nd nd nd | 0.33 0.42 0.50 0.40 | 3 4 4 3 | 4 | 2 | 10 | 9 |
| reads | miRBase family seed | |||
| seed | ------------------------------------UGAGUAC--------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------CACCUGA---------------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------------UCCCUGG------------------------------------- | 1 | novel | |
| seed | -----------------CGGCUCA---------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ----------------------------TCACCTGATGAGTACTAAT----------------------------------------------------------------- | 19 | 1 | - | |
| ----------------TCGGCTCATGTGTCACCT------------------------------------------------------------------------------ | 18 | - | 1 | |
| -----------------------------------ATGAGTACTAATTGCAAATG--------------------------------------------------------- | 20 | - | 1 | |
| -------------------------------------------------------------------GTCCCTGGAGAAAACATGAC------------------------- | 20 | - | 1 | |
| rat | gggatgtccttgggcaTCGGCTCATGTGTCACCTGATGAGTACTAATTGCAAATGcattttcctctgGTCCCTGGAGAAAACATGACagaaaaagatgcctgaacaaagccc | |||
| **************************************************************************************************************** | ||||
| rat | (((.(((..(((((((((...((((((.((.((.(((.((....((.(((....))).))....)).)))...)).))..))))))........))))))))))))...))) | 0.960 -31.60 | ||
| rat | chromosome:7:18836994:18837105:-1 | intergenic |
sblock10733 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.135 | no | no | 0.38/0.58 | 19/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 13 7 | -1 3 | 5arm_loop 3arm | 7 12 | nd nd | 0.48 0.37 | 4 3 | 2 | 1 | 4 | 6 |
| reads | miRBase family seed | ||
| seed | --------------UCCAUGU---------------------------------------------- | 1 | novel |
| seed | ------------------------------------------AGACAGA------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------------------TAGACAGACACTGGGACCC------- | 19 | 1 | |
| -------------TTCCATGTTCCTGTAGAATGT--------------------------------- | 21 | 1 | |
| rat | tctctagaaatccTTCCATGTTCCTGTAGAATGTtttccatTAGACAGACACTGGGACCCctgaaga | ||
| ******************************************************************* | |||
| rat | (((.(((...((((....(((..((((..((((.....))))..)))))))..))))...))).))) | 0.950 -13.00 |
| rat | chromosome:7:19373971:19374037:-1 | intergenic |
sblock11168 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.060 | no | no | 0.38/0.58 | 19/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 16 15 | -1 3 | 5arm_loop 3arm | 7 12 | nd nd | 0.48 0.37 | 4 3 | 2 | 1 | 4 | 6 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------AGACAGA-------------------------- | 1 | novel |
| seed | -----------------UCCAUGU------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------TAGACAGACACTGGGACCC--------------- | 19 | 1 | |
| ----------------TTCCATGTTCCTGTAGAATGT----------------------------------------- | 21 | 1 | |
| rat | cctgctttagaaatccTTCCATGTTCCTGTAGAATGTtttccatTAGACAGACACTGGGACCCctgaagatctcaggg | ||
| ****************************************************************************** | |||
| rat | ((((((((((...((((....(((..((((..((((.....))))..)))))))..))))...))))))....)))). | 0.480 -20.20 |
| rat | chromosome:7:17182070:17182147:1 | intergenic |
sblock11190 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.060 | no | no | 0.38/0.58 | 19/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 16 15 | -1 3 | 5arm_loop 3arm | 7 12 | nd nd | 0.48 0.37 | 4 3 | 2 | 1 | 4 | 6 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------AGACAGA-------------------------- | 1 | novel |
| seed | -----------------UCCAUGU------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------TAGACAGACACTGGGACCC--------------- | 19 | 1 | |
| ----------------TTCCATGTTCCTGTAGAATGT----------------------------------------- | 21 | 1 | |
| rat | cctgctttagaaatccTTCCATGTTCCTGTAGAATGTtttccatTAGACAGACACTGGGACCCctgaagatctcaggg | ||
| ****************************************************************************** | |||
| rat | ((((((((((...((((....(((..((((..((((.....))))..)))))))..))))...))))))....)))). | 0.480 -20.20 |
| rat | chromosome:7:17429191:17429268:1 | intergenic |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 30537 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.