other hairpins
novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH (44 loci)
sblock6973 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.813 | no | no | 0.58/0.61 | 18/24/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 7 25 | 8 -7 | 5arm 3arm_loop | 23 62 | nd nd | 0.38 0.56 | 3 6 | 2 | 2 | 0 | -16 |
| reads | miRBase family seed | |||
| seed | --------UCCAGGA-------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------CCCUGAG----------------------------------- | 1 | miR-125a/125b/351 | |
| len | cloning frequencies | |||
| T1S2 | T4S1 | |||
| ----------------------------------------TCCCTGAGTGAGAGCCTG------------------------- | 18 | 1 | - | |
| -------ATCCAGGAAGAGTTCCAGAGGGCC---------------------------------------------------- | 24 | - | 1 | |
| rat | gcagttgATCCAGGAAGAGTTCCAGAGGGCCcctgttgcaTCCCTGAGTGAGAGCCTGttcttggccttgtccttcaggctgt | |||
| *********************************************************************************** | ||||
| rat | ((((((((...((((.(((..(((.(((((..((.((((........)))).))...)))))))).))).)))))))).)))) | 0.880 -21.80 | ||
| rat | chromosome:20:37903139:37903221:-1 | intergenic |
sblock7054 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.322 | no | no | 0.53/0.65 | 19/23/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 30 0 | -2 22 | 5arm_loop 3arm | 24 24 | nd nd | 0.42 0.45 | 3 4 | 2 | 2 | 0 | -21 |
| reads | miRBase family seed | |||
| seed | -------------------------------UCUGACA---------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------------------GCAGGCA--------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ------------------------------GTCTGACATGAAGCACTGG----------------------------------------------- | 19 | 1 | - | |
| -------------------------------------------------------------------------TGCAGGCAGGCCCAAGGTCCAAG | 23 | - | 1 | |
| rat | cggacgtaggttcgatgatgctgttgttcaGTCTGACATGAAGCACTGGccggcccttcatggtggtgaatgaTGCAGGCAGGCCCAAGGTCCAAG | |||
| ************************************************************************************************ | ||||
| rat | .((((...(((....((.(((.((..((((.((...(((((((..((....))..)))))))..))))))..)))))..)).)))....))))... | 0.710 -28.70 | ||
| rat | chromosome:20:48153392:48153487:-1 | intergenic |
sblock74 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.588 | no | no | 0.53/0.68 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 20 17 | -2 2 | 5arm_loop 3arm | 4 11 | nd nd | 0.63 0.37 | 5 2 | 2 | 1 | 5 | 8 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------GUGAGCA---------------------------- | 1 | novel |
| seed | ---------------------UGUGGAG---------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| --------------------------------------------AGTGAGCATGTCTTGGGAC----------------- | 19 | 1 | |
| --------------------GTGTGGAGGGCAGAGCCAG----------------------------------------- | 19 | 1 | |
| rat | gtggcctgcagagactcgagGTGTGGAGGGCAGAGCCAGggaggAGTGAGCATGTCTTGGGACctgacagccaggcggct | ||
| ******************************************************************************** | |||
| rat | ((.((((((((...((((((..(((.....((...((.....))..))..)))..))))))..))).....))))).)). | 0.780 -24.40 |
| rat | chromosome:1:32828900:32828979:-1 | intergenic |
sblock8389 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.643 | no | no | 0.58/0.70 | 19/23/0.50 | 0.7 0.0 | 2.0 0.0 | 3 1 | 0 0 | 3 1 | 0 0 | 16 0 | -7 22 | 5arm_loop_3arm 3arm | 14 18 | nd nd | 0.42 0.53 | 3 7 | 4 | 4 | -18 | -19 |
| reads | miRBase family seed | |||||
| seed | ------------------UGGGCGA------------------------------------------------------- | 2 | novel | |||
| seed | -----------------CUGGGCG-------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------------CCGCCCA------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T2S2 | |||
| ------------------------------------------------------------GCCGCCCAAGCTGACTCCTC | 20 | 1 | - | - | - | |
| -----------------CTGGGCGAGTTTTCCTTCCGCAG---------------------------------------- | 23 | - | - | 1 | - | |
| ----------------CCTGGGCGAGTTTTCCTTC--------------------------------------------- | 19 | - | - | - | 1 | |
| -----------------CTGGGCGAGTTTTCCTTCC-------------------------------------------- | 19 | - | 1 | - | - | |
| rat | ggcagcagcgcgtgtgCCTGGGCGAGTTTTCCTTCCGCAGgtgccagcagccggggcgccGCCGCCCAAGCTGACTCCTC | |||||
| ******************************************************************************** | ||||||
| rat | ((.(((((((((.((((((.(((..(((..(((.....)))....))).))).))))))))).......)))).)))).. | 0.750 -32.51 | ||||
| rat | chromosome:4:57851661:57851740:-1 | intergenic ## {SimpF: 1 Eponine} |
sblock9877 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.078 | no | no | 0.58/0.67 | 19/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 14 18 | -2 -4 | 5arm_loop 3arm_loop | 16 16 | nd nd | 0.32 0.48 | 3 4 | 2 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | ------------------------------------AGCUGUC------------------------------- | 1 | novel | |
| seed | ---------------GGCUGCC---------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S2 | |||
| --------------AGGCTGCCTTCCACACAAC----------------------------------------- | 19 | - | 1 | |
| -----------------------------------CAGCTGTCAGGAGCGCAGGAC------------------ | 21 | 1 | - | |
| rat | cccaactctgttgcAGGCTGCCTTCCACACAACtaCAGCTGTCAGGAGCGCAGGACctactctgcacagcttgg | |||
| ************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040097 ENSRNOG00000006890 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049597 ENSRNOG00000006890 | |||
| rat | .((((..(((.((((((((((.((((..(((........)))..)))).)))).......))))))))).)))) | 0.990 -21.71 | ||
| rat | chromosome:5:164046830:164046903:1 | Same_strand|Boundary_non-coding|ENSRNOT00000031837|ENSRNOG00000006890 ## Same_strand|Intronic_coding|ENSRNOT00000040097|ENSRNOG00000006890 ## ENSRNOG00000006890|protein_coding|| |
sblock9878 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.190 | no | no | 0.58/0.67 | 19/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 7 14 | -2 -4 | 5arm_loop 3arm_loop | 16 16 | nd nd | 0.32 0.48 | 3 4 | 2 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | --------GGCUGCC------------------------------------------------ | 1 | novel | |
| seed | -----------------------------AGCUGUC--------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S2 | |||
| -------AGGCTGCCTTCCACACAAC------------------------------------- | 19 | - | 1 | |
| ----------------------------CAGCTGTCAGGAGCGCAGGAC-------------- | 21 | 1 | - | |
| rat | ctgttgcAGGCTGCCTTCCACACAACtgCAGCTGTCAGGAGCGCAGGACctactctgcacagc | |||
| *************************************************************** | ||||
| rat | (((.((((((((((.((((..(((........)))..)))).)))).......))))))))). | 0.870 -18.51 | ||
| rat | chromosome:5:164401627:164401689:1 | intergenic |
sblock9880 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.190 | no | no | 0.58/0.67 | 19/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 7 14 | -2 -4 | 5arm_loop 3arm_loop | 16 16 | nd nd | 0.32 0.48 | 3 4 | 2 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | --------GGCUGCC------------------------------------------------ | 1 | novel | |
| seed | -----------------------------AGCUGUC--------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S2 | |||
| -------AGGCTGCCTTCCACACAAC------------------------------------- | 19 | - | 1 | |
| ----------------------------CAGCTGTCAGGAGCGCAGGAC-------------- | 21 | 1 | - | |
| rat | ctgttgcAGGCTGCCTTCCACACAACtgCAGCTGTCAGGAGCGCAGGACctactctgcacagc | |||
| *************************************************************** | ||||
| rat | (((.((((((((((.((((..(((........)))..)))).)))).......))))))))). | 0.870 -18.51 | ||
| rat | chromosome:5:164748840:164748902:1 | intergenic |
sblock2974 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.093 | no | no | 0.55/0.58 | 19/20/0.33 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 38 23 | -13 11 | 5arm_loop 3arm | 100 137 | nd nd | 0.70 0.37 | 14 3 | 3 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------------AGGCUGU---------------------------------- | 2 | novel | |
| seed | ---------------------------------------GCCCAGA----------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S2 | |||
| ---------------------------------------------------------------------------AAGGCTGTGGGCAAGGTCA----------------------- | 19 | 1 | 1 | |
| --------------------------------------AGCCCAGAACATCATCCCTG----------------------------------------------------------- | 20 | - | 1 | |
| rat | ggcccctctggaaagctgtggcgtgatggccatggggcAGCCCAGAACATCATCCCTGcatccactggtgctgccAAGGCTGTGGGCAAGGTCAtcccagagctgaacaggaagctc | |||
| ********************************************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058917 ENSRNOG00000038610 Q8K4T8_RAT | |||
| rat | (((...((((...((((.(((.((((((.((((((((((((((((...................)))).))))))....)))))).))...)))).))).))))...))))..))). | 0.430 -45.71 | ||
| rat | chromosome:11:70680207:70680323:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000058917|ENSRNOG00000038610 ## ENSRNOG00000038610|protein_coding|Q8K4T8_RAT|Glyceraldehyde-3-phosphate-dehydrogenase (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q8K4T8] |
sblock8168 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.305 | no | no | 0.58/0.63 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 22 16 | -8 -3 | 5arm_loop 3arm_loop | 137 137 | nd nd | 0.58 0.42 | 9 3 | 3 | 3 | 0 | 5 |
| reads | miRBase family seed | ||||
| seed | -----------------------AGGCUGU-------------------------------------------- | 2 | novel | ||
| seed | ----------------------------------------AUCCCAG--------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T3S1 | T5S2 | |||
| ----------------------AAGGCTGTGGGCAAGGTCA--------------------------------- | 19 | 1 | - | 1 | |
| ---------------------------------------CATCCCAGAGCTGAACGGG---------------- | 19 | - | 1 | - | |
| rat | ccatgtatccactggtactgccAAGGCTGTGGGCAAGGTCATCCCAGAGCTGAACGGGaagctcactggcatgg | ||||
| ************************************************************************** | |||||
| rat | (((((...(((.((((.(((....((((.((((.........)))).))))...)))...)).)).)))))))) | 0.510 -22.90 | |||
| rat | chromosome:3:128260450:128260523:1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_Multihit_nonpairedHIGH (43 loci)
sblock10294 [novel_lenNOK_multiarm_DicerNOK_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.460 | no | no | 0.42/0.58 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 18 23 | 6 2 | 5arm 3arm | 123 129 | nd nd | 0.32 0.32 | 3 3 | 2 | 2 | -3 | -5 |
| reads | miRBase family seed | |||
| seed | -------------------AUGUUCC---------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------GCACAGU---------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| ------------------CATGTTCCAGTATGACTCT----------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------GGCACAGTCAAGGCTGAGA----------------------- | 19 | 1 | - | |
| rat | cctcaactacatagtctaCATGTTCCAGTATGACTCTacccatgcaagttcaatGGCACAGTCAAGGCTGAGAatgggaagcttgtcatcaaaggg | |||
| ************************************************************************************************ | ||||
| rat | (((.....(((...(((....((((((((.(((((....((((.........))))...)))))..)))).)))).)))....)))......))). | 0.690 -19.80 | ||
| rat | chromosome:6:64866832:64866927:1 | intergenic |
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