other hairpins
novel_lenNOK_shortStem_loopOverlap_randfoldOK_bulgeHIGH (43 loci)
block2251482 [novel_lenNOK_shortStem_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.47/0.47 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -1 | 3arm | 1 | nd | 0.26 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------GCUGAUG--------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| ------------------------AGCTGATGTGAAGTCTCCA---- | 19 | 1 | |
| rat | agctggagacaccgtcagtccctcAGCTGATGTGAAGTCTCCAagtt | ||
| *********************************************** | |||
| rat | ((((((((((..(((((((......)))))))....))))))).))) | 1.000 -19.10 |
| rat | chromosome:7:116366113:116366159:1 | intergenic |
block2426254 [novel_lenNOK_shortStem_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.22/0.22 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | -3 | 5arm_loop | 1 | nd | 0.28 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --UUUUUAC----------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| -TTTTTTACAAGAGTCAAA------------------- | 18 | 1 | |
| rat | cTTTTTTACAAGAGTCAAAcaggactcttgtaacagag | ||
| ************************************** | |||
| rat | ((((.(((((((((((......))))))))))).)))) | 1.000 -16.90 |
| rat | chromosome:8:79512769:79512806:1 | intergenic |
block2479640 [novel_lenNOK_shortStem_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.17/0.17 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | -4 | 5arm_loop | 1 | nd | 0.28 | 5 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---GUGAUAU-------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| --AGTGATATGTATATATTA---------------------------- | 18 | 1 | |
| rat | tgAGTGATATGTATATATTAcactggcaaatatgcatataatcattca | ||
| ************************************************ | |||
| rat | .(((((((((((((((.............)))))))))...)))))). | 0.880 -11.62 |
| rat | chromosome:9:17380635:17380682:-1 | intergenic |
block2549057 [novel_lenNOK_shortStem_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | -1 | 3arm | 1 | nd | 0.22 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------GGGUGUU------------ | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| ------------------------TGGGTGTTTCCAACAACA-- | 18 | 1 | |
| rat | aggtgaatggacaagcacctcaccTGGGTGTTTCCAACAACAct | ||
| ******************************************** | |||
| rat | .((((..((((..(((((((.....)))))))))))....)))) | 0.980 -13.70 |
| rat | chromosome:9:104143503:104143546:-1 | intergenic |
block2976083 [novel_lenNOK_shortStem_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.28/0.28 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -3 | 5arm_loop | 2 | nd | 0.28 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----GGAAUGA------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| ----AGGAATGATTTCTTTTTC-------------------------- | 18 | 1 | |
| rat | cacaAGGAATGATTTCTTTTTCtgttactggagaaatcactccaggtg | ||
| ************************************************ | |||
| rat | (((..(((.((((((((((..........)))))))))).)))..))) | 1.000 -16.00 |
| rat | chromosome:X:51884298:51884345:1 | intergenic |
novel_multiarm_loopOverlap (43 loci)
block92865 [novel_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.341 | no | no | 0.73/0.84 | 21/25/0.75 | 0.0 0.0 | 1.7 0.0 | 3 1 | 0 0 | 1 1 | 0 0 | 17 2 | -17 -1 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.36 0.23 | 3 3 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------GGCCAGC-------------------------- | 3 | novel | |
| seed | ----------------------------GCUCCUC---------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| -----------------CGGCCAGCCGCGCTCCTCCTCC------------ | 22 | 1 | - | |
| -----------------CGGCCAGCCGCGCTCCTCCTCCGGG--------- | 25 | 1 | - | |
| ---------------------------CGCTCCTCCTCCGGGCGGGAAT-- | 22 | - | 1 | |
| -----------------CGGCCAGCCGCGCTCCTCCTC------------- | 21 | 1 | - | |
| rat | gggtgcctccgcccggcCGGCCAGCCGCGCTCCTCCTCCGGGCGGGAATcc | |||
| *************************************************** | ||||
| rat | ((((...(((((((((..((..(((...)))...)).))))))))).)))) | 1.000 -24.00 | ||
| rat | chromosome:10:85700389:85700439:1 | intergenic |
block490993 [novel_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.638 | no | no | 0.67/0.70 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 18 25 | -1 -7 | 5arm_loop 5arm_loop_3arm | 3 3 | nd nd | 0.29 0.50 | 2 7 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------CCGCGUU--------------------------------------------- | 2 | novel | |
| seed | -------------------ACAUGGG---------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S2 | |||
| -------------------------GCCGCGTTCGCACCAAGACC--------------------------------- | 20 | 2 | - | |
| ------------------AACATGGGCCGCGTTCGCACC--------------------------------------- | 21 | - | 1 | |
| rat | cttttaccgagacccgtcAACATGGGCCGCGTTCGCACCAAGACCgtgaagaagtcggcccgagtcatcatcgagaag | |||
| ****************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000059064 ENSRNOG00000038690 | |||
| rat | (((((..(((.........((.(((((((..(((.(((.......)))..)))..))))))).)).....)))))))) | 0.410 -18.54 | ||
| rat | chromosome:15:45024202:45024279:1 | Same_strand|Intronic_coding|ENSRNOT00000059064|ENSRNOG00000038690 ## ENSRNOG00000038690|protein_coding|| |
block505850 [novel_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.862 | no | no | 0.43/0.58 | 20/24/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 35 11 1 | -19 3 9 | 5arm_loop_3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.57 0.55 0.29 | 5 5 3 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------CCUCAGA-------------------------------- | 1 | novel |
| seed | ---------------------------------------------GCAUAUC----------------------- | 1 | novel |
| seed | ---------------------------------------------------CACUCCC----------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------AGCATATCACTCCCTCAGCA----------- | 20 | 1 | |
| -----------------------------------TCCTCAGAAAGCATATCACTC------------------- | 21 | 1 | |
| --------------------------------------------------TCACTCCCTCAGCATGGCGGAAGA- | 24 | 1 | |
| rat | atctggattcactagcctaaggccaatgagcaattTCCTCAGAAAGCATATCACTCCCTCAGCATGGCGGAAGAt | ||
| *************************************************************************** | |||
| rat | ((((...(((.(((..((.(((....(((....((((....)))).....)))...))).))..))).))))))) | 0.440 -10.00 |
| rat | chromosome:15:84143709:84143783:1 | intergenic |
block878941 [novel_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.156 | no | no | 0.41/0.50 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 16 23 | 2 -7 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.25 0.36 | 2 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------CACAAAG------------------------------------------------- | 2 | novel |
| seed | -----------------GCCUGUU-------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------TCACAAAGTGCCATCATAAGAG----------------------------------- | 22 | 2 | |
| ----------------TGCCTGTTCACAAAGTGCCA-------------------------------------------- | 20 | 1 | |
| rat | tcatttaactccagtcTGCCTGTTCACAAAGTGCCATCATAAGAGcatattgggaactggtgttcttctcaatccatgat | ||
| ******************************************************************************** | |||
| rat | ((((........((..((((.((((.(((.((((..((....)))))).))).)))).))))..)).........)))). | 0.840 -15.43 |
| rat | chromosome:1:124830511:124830590:-1 | intergenic |
block937109 [novel_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.292 | no | no | 0.57/0.64 | 21/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 31 3 | -21 1 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.50 0.24 | 8 2 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------CCUAGGU---------------- | 1 | novel | |
| seed | --------------------------------ACUGUCG-------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| -------------------------------GACTGTCGCCCCCTAGGTCACT------------ | 22 | - | 1 | |
| -----------------------------------------CCCTAGGTCACTAAGGACCTC--- | 21 | 1 | - | |
| rat | gcagagggacatactgggaactgagctaaggGACTGTCGCCCCCTAGGTCACTAAGGACCTCgcc | |||
| ***************************************************************** | ||||
| rat | ((.((((......((.((...(((.(((.(((........))).))).))))).))..)))))). | 0.940 -17.60 | ||
| rat | chromosome:1:263219779:263219843:-1 | intergenic |
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