other hairpins
novel_multiarm_loopOverlap (43 loci)
sblock4379 [novel_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.231 | no | no | 0.40/0.52 | 20/21/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 7 23 0 | 14 -1 33 | 5arm 5arm_loop 3arm | 1 1 1 | nd nd nd | 0.29 0.35 0.45 | 2 3 4 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------UGCAUGG--------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------------------------------GACCCCU------------- | 1 | novel | |
| seed | ------------------------UCAGCAG----------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| ---------------------------------------------------------------------------------------------TGACCCCTTGTACCTTATCAC | 21 | - | 1 | |
| -----------------------TTCAGCAGAACATCATAGTC----------------------------------------------------------------------- | 20 | 1 | - | |
| -------GTGCATGGCAACCTTCTTCAG-------------------------------------------------------------------------------------- | 21 | - | 1 | |
| rat | gtgaattGTGCATGGCAACCTTCTTCAGCAGAACATCATAGTCtatcttaaccacctccaacttgtccatggctctgctgtacagctctctggTGACCCCTTGTACCTTATCAC | |||
| ****************************************************************************************************************** | ||||
| rat | ((((...(((((.((..(((..((.(((((((.(((...(((..................))).....)))..)))))))...))......)))..))...)))))....)))) | 0.740 -21.57 | ||
| rat | chromosome:15:248091:248204:-1 | intergenic |
sblock4549 [novel_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.382 | no | no | 0.55/0.64 | 22/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 6 9 | 3 -5 | 5arm 3arm_loop | 1 1 | nd nd | 0.27 0.36 | 2 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------CCAGUGC------------------------------------------------ | 1 | novel | |
| seed | --------------------------------GGCCUUU----------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -------------------------------CGGCCTTTGCTGCGGTTACCAG--------- | 22 | 1 | - | |
| ------ACCAGTGCCTGGGAGATTACAG---------------------------------- | 22 | - | 1 | |
| rat | gaggatACCAGTGCCTGGGAGATTACAGaaaCGGCCTTTGCTGCGGTTACCAGggctgtctt | |||
| ************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000008553 ENSRNOG00000006422 LOC682965 | |||
| rat | .((((...((((.(((((..(((..((((((.....))).)))..))).))))))))))))) | 1.000 -17.50 | ||
| rat | chromosome:15:4324773:4324834:1 | Same_strand|Boundary_non-coding|ENSRNOT00000029837|ENSRNOG00000006422 ## Same_strand|Intronic_coding|ENSRNOT00000008553|ENSRNOG00000006422 ## ENSRNOG00000006422|protein_coding|LOC682965|similar to potassium channel, subfamily K, member 16 (LOC688996), mRNA [Source:RefSeq_dna;Acc:NM_001109520] |
sblock5059 [novel_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.094 | no | no | 0.41/0.58 | 22/24/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 28 41 2 | -3 -18 20 | 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.41 0.46 0.27 | 4 8 3 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------ACCUUUG---------------- | 1 | novel |
| seed | ------------------------------------------AGCUUCA-------------------------------------------------- | 1 | novel |
| seed | -----------------------------GAGGAAU--------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------TGAGGAATGGCTATAGCTTCAG------------------------------------------------- | 22 | 1 | |
| -----------------------------------------TAGCTTCAGCCACAGAGCACGGCT---------------------------------- | 24 | 1 | |
| ---------------------------------------------------------------------------TACCTTTGGAAGTGCAAATGAG-- | 22 | 1 | |
| rat | tctccgctgctgtcttcccaaagcctaaTGAGGAATGGCTATAGCTTCAGCCACAGAGCACGGCTatctttcttgTACCTTTGGAAGTGCAAATGAGag | ||
| *************************************************************************************************** | |||
| rat | ((((...(((...(((.((((((......(((..((((((...((((........))))..))))))..)))......))))))))).)))...)))). | 0.960 -27.80 |
| rat | chromosome:17:18977256:18977354:-1 | intergenic |
sblock5298 [novel_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.075 | no | no | 0.42/0.55 | 19/23/0.83 | 0.0 0.0 1.0 0.0 | 0.0 0.0 1.3 0.0 | 1 1 3 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 0 31 36 0 | 34 2 -9 27 | 5arm 5arm 5arm_loop_3arm 3arm | 1 2 2 2 | nd nd nd nd | 0.47 0.40 0.32 0.26 | 5 4 3 3 | 6 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------UCUAGGC----------------------------------------------------------- | 2 | novel | ||
| seed | --------------------------------CCCCUUC---------------------------------------------------------------- | 1 | novel | ||
| seed | -UUCUCAG----------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------------------------GCUGAUC------------ | 1 | novel | ||
| seed | ----------------------------------------AGGCCUU-------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S2 | T5S1 | |||
| ------------------------------------TTCTAGGCCTTGAGTACCTTGT--------------------------------------------- | 22 | - | - | 2 | |
| GTTCTCAGTACCCAAGTAA------------------------------------------------------------------------------------ | 19 | - | - | 1 | |
| ---------------------------------------TAGGCCTTGAGTACCTTGTAACC----------------------------------------- | 23 | - | - | 1 | |
| -----------------------------------------------------------------------------------GGCTGATCGCTGAGGGTATT | 20 | 1 | - | - | |
| -------------------------------TCCCCTTCTAGGCCTTGAGT---------------------------------------------------- | 20 | - | 1 | - | |
| rat | GTTCTCAGTACCCAAGTAAcgcagctccttaTCCCCTTCTAGGCCTTGAGTACCTTGTAACCaaattctgtgaaacaacctggGGCTGATCGCTGAGGGTATT | ||||
| ******************************************************************************************************* | |||||
| rat | ......(((((((.(((....(((((((........(((((((..(((..(((...)))..)))..)))).))).......)))))))...)))..))))))) | 0.970 -27.56 | |||
| rat | chromosome:17:20766401:20766503:1 | intergenic |
sblock6904 [novel_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.470 | no | no | 0.46/0.52 | 21/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 25 | 28 -1 | 5arm 3arm | 1 1 | nd nd | 0.54 0.10 | 10 1 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------GGCAGGU-------------------------------------- | 1 | novel | |
| seed | -GUUGAGU--------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| AGTTGAGTTACCTCCTAGAAGCAC----------------------------------------------------------------------------- | 24 | - | 1 | |
| -------------------------------------------------------AGGCAGGTTCTTGACCTTCAG------------------------- | 21 | 1 | - | |
| rat | AGTTGAGTTACCTCCTAGAAGCACaagcgtgaaggcgatcggaggagcctttgagAGGCAGGTTCTTGACCTTCAGgcttgacccagaaagtgtacttcag | |||
| ***************************************************************************************************** | ||||
| rat | ...((((.(((((..........(((((.((((((...(((..(((((((((....)).)))))))))))))))).)))))........)).))).)))). | 0.740 -29.47 | ||
| rat | chromosome:20:19158648:19158748:-1 | intergenic |
sblock7820 [novel_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.497 | no | no | 0.65/0.70 | 20/20/1.00 | 0.0 0.0 | 0.0 0.0 | 1 3 | 0 0 | 1 3 | 0 0 | 1 31 | 21 -1 | 5arm 3arm | 1 1 | nd nd | 0.30 0.40 | 3 7 | 4 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------CCGCUGG------------------------------------------- | 3 | novel | |||
| seed | --UGGUGGU-------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T3S1 | T5S1 | |||
| --------------------------------------------GCCGCTGGCACCCAGAGAAC------------------------------- | 20 | 1 | 1 | - | 1 | |
| -CTGGTGGTGCGGTAGAGCTC-------------------------------------------------------------------------- | 20 | - | - | 1 | - | |
| rat | tCTGGTGGTGCGGTAGAGCTCaactttcctgtgtgccaacgggcGCCGCTGGCACCCAGAGAACagagacggttgcagatgaagcgatctcggac | |||||
| *********************************************************************************************** | ||||||
| rat | (((((.(((((..((...(((((((.((((((((((((.(((...))).)))))).......)))).)).))))).)).))..)).)))))))). | 0.670 -31.81 | ||||
| rat | chromosome:3:4321514:4321608:1 | intergenic |
sblock9025 [novel_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.206 | no | no | 0.70/0.70 | 20/20/1.00 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 24 3 | -6 7 | 5arm_loop_3arm 3arm | 1 1 | 14 13 | 0.70 0.30 | 8 2 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------CCGGGUC--------------- | 2 | novel | |
| seed | -------------------------UGGGUGA------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| ---------------------------------------------------GCCGGGTCAGCTGGACTAGC--- | 20 | - | 2 | |
| ------------------------TTGGGTGAGGGCGCGGTGAG------------------------------ | 20 | 1 | - | |
| rat | cggagtaggcggcggggcgaggccTTGGGTGAGGGCGCGGTGAGgcgctggGCCGGGTCAGCTGGACTAGCtga | |||
| ************************************************************************** | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000038964 ENSRNOG00000021817 Irak2 | |||
| rat | (((..(((.((((..(((..(((((........(((((......))))))))))..))).))))..))).))). | 0.970 -30.00 | ||
| rat | chromosome:4:149601749:149601822:1 | Same_strand|Boundary_non-coding|ENSRNOT00000040411|ENSRNOG00000021817 ## Same_strand|Intronic_non-coding|ENSRNOT00000038964|ENSRNOG00000021817 ## ENSRNOG00000021817|protein_coding|Irak2|Interleukin-1 receptor-associated kinase-like 2 (IRAK-2). [Source:UniProtKB/Swiss-Prot;Acc:Q4QQS0] ## {SimpF: oe = 0.79 1 CpG} |
sblock977 [novel_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.224 | no | no | 0.43/0.50 | 20/23/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 8 26 3 | 14 -6 14 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.48 0.40 0.26 | 4 5 3 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------CUUCUGU------------------ | 1 | novel | ||
| seed | ---------UGUAACU-------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------GGUAUGG-------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T3S1 | T4S2 | |||
| --------------------------------------------TGGTATGGGGGAGTTTGTAG-------------------------- | 20 | 1 | - | - | |
| ----------------------------------------------------------------GCTTCTGTCTGTGAAGAGAGTCA--- | 23 | - | - | 1 | |
| --------CTGTAACTTGAGGATGGTAAC------------------------------------------------------------- | 21 | - | 1 | - | |
| rat | ggtggtttCTGTAACTTGAGGATGGTAACttgtttattttgcctTGGTATGGGGGAGTTTGTAGGCTTCTGTCTGTGAAGAGAGTCAtct | ||||
| ****************************************************************************************** | |||||
| rat | ((((((((((...((....((((((...(((((..(((((.((.......)).)))))..)))))...))))))))..))))).))))). | 0.440 -20.20 | |||
| rat | chromosome:1:208428596:208428685:-1 | intergenic |
novel_lenNOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (42 loci)
block18223 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.390 | no | no | 0.58/0.64 | 18/22/0.43 | 1.7 0.0 | 0.8 0.0 | 6 1 | 0 0 | 6 1 | 0 0 | 16 25 | -4 -9 | 5arm_loop 5arm_loop_3arm | 1 1 | 58 52 | 0.48 0.47 | 4 5 | 7 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -------------------CCUUCAG------------------------------------------------------ | 3 | novel | |||||
| seed | ------------------CCCUUCA------------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------ACCGCCA----------------------------------------------- | 1 | novel | |||||
| seed | --------------------CUUCAGA----------------------------------------------------- | 1 | novel | |||||
| seed | -----------------GCCCUUC-------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S1 | T2S2 | T4S1 | T5S1 | T5S2 | |||
| ------------------CCCTTCAGACCGCCAGAAC------------------------------------------- | 19 | - | - | 1 | - | - | - | |
| ------------------CCCTTCAGACCGCCAGAA-------------------------------------------- | 18 | 1 | - | - | - | - | - | |
| ----------------AGCCCTTCAGACCGCCAGAAC------------------------------------------- | 21 | - | 1 | - | - | - | - | |
| ------------------CCCTTCAGACCGCCAGAACTC----------------------------------------- | 21 | - | - | - | - | - | 1 | |
| -----------------GCCCTTCAGACCGCCAGAACTC----------------------------------------- | 22 | - | - | - | - | 1 | - | |
| -------------------------GACCGCCAGAACTCTTCTG------------------------------------ | 19 | - | - | - | 1 | - | - | |
| -------------------CCTTCAGACCGCCAGAAC------------------------------------------- | 18 | - | - | - | 1 | - | - | |
| rat | ccctccacattcctgcAGCCCTTCAGACCGCCAGAACTCTTCTGctgcctgcccaactgcctgcctgcctgtgccgaggt | |||||||
| ******************************************************************************** | ||||||||
| ..............................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++ | ENSRNOT00000017486 ENSRNOG00000012840 Sparc | |||||||
| rat | .((((((((.....(((((....(((..((.((((.....)))).)).))).......)).))).....))))..)))). | 0.780 -15.80 | ||||||
| rat | chromosome:10:40831442:40831521:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000017486|ENSRNOG00000012840 ## ENSRNOG00000012840|protein_coding|Sparc|SPARC precursor (Secreted protein acidic and rich in cysteine) (Osteonectin) (ON) (Basement-membrane protein 40) (BM-40). [Source:UniProtKB/Swiss-Prot;Acc:P16975] |
block137129 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.934 | no | no | 0.35/0.70 | 19/25/0.50 | 0.0 10.5 0.0 | 0.0 7.7 0.0 | 1 6 1 | 0 0 0 | 1 2 1 | 0 0 0 | 32 6 0 | -19 -1 21 | 5arm_loop_3arm 3arm 3arm | 1 1 1 | 19 29 45 | 0.55 0.36 0.56 | 5 5 6 | 8 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------GUAUGAG--------------------- | 2 | novel | |
| seed | ------------------------------------------------------------GAAAUUG----------- | 1 | novel | |
| seed | --------------------------------------CUUCGGA--------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------AUGAGUU------------------- | 1 | novel | |
| seed | ------------------------------------------------------GAGUUGG----------------- | 1 | novel | |
| seed | ---------------------------------CGGCCCU-------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------GGUGUAU------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| -------------------------------------------------TGTATGAGTTGGAAATTGACAC------- | 22 | 1 | 1 | |
| -------------------------------------CCTTCGGAGAGGTGTATGAGTTGGA---------------- | 25 | 1 | - | |
| ---------------------------------------------------TATGAGTTGGAAATTGACAC------- | 20 | - | 1 | |
| ----------------------------------------------AGGTGTATGAGTTGGAAATTGACAC------- | 25 | - | 1 | |
| -----------------------------------------------------------GGAAATTGACACGCTGGAG | 19 | 1 | - | |
| --------------------------------GCGGCCCTTCGGAGAGGTGT-------------------------- | 20 | 1 | - | |
| -----------------------------------------------------TGAGTTGGAAATTGACACG------ | 19 | 1 | - | |
| rat | tcctttcttccttccttcctcccatctccacaGCGGCCCTTCGGAGAGGTGTATGAGTTGGAAATTGACACGCTGGAG | |||
| ****************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000002464 ENSRNOG00000038370 Ahsg | |||
| ++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000058422 ENSRNOG00000038370 Ahsg | |||
| ++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000058421 ENSRNOG00000038370 Ahsg | |||
| rat | (((.....((.((((...(((((.(((((..((.....))..))))))).....)))..))))...))......))). | 0.870 -14.00 | ||
| rat | chromosome:11:80334532:80334609:-1 | Same_strand|Boundary_coding|ENSRNOT00000002464|ENSRNOG00000038370 ## ENSRNOG00000038370|protein_coding|Ahsg|Alpha-2-HS-glycoprotein precursor (Fetuin-A) (Glycoprotein PP63) (59 kDa bone sialic acid-containing protein) (BSP). [Source:UniProtKB/Swiss-Prot;Acc:P24090] |
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