other hairpins
novel_lenNOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (42 loci)
novel_lenNOK_cloningOK_5varHIGH_loopOverlap (41 loci)
block138957 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.828 | no | no | 0.47/0.55 | 18/24/0.64 | 2.6 0.0 | 4.3 0.0 | 10 1 | 0 0 | 6 1 | 0 0 | 24 16 | -8 5 | 3arm_loop 3arm | 6 6 | nd nd | 0.28 0.38 | 2 5 | 11 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------AAGCACA----------------------------------------- | 4 | novel | |||||
| seed | -------------------------------------------CAGCAGA------------------------------------ | 3 | novel | |||||
| seed | ---------------------------------------AGCACAG---------------------------------------- | 2 | novel | |||||
| seed | -------------------------------------AAAGCAC------------------------------------------ | 1 | novel | |||||
| seed | --------------------------------------------------ACAACGU----------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S1 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| ------------------------------------------ACAGCAGAACAACGTGGA-------------------------- | 18 | 1 | 1 | - | - | - | - | |
| -------------------------------------AAAGCACAGCAGAACAACG------------------------------ | 19 | 1 | - | - | - | - | - | |
| --------------------------------------AAGCACAGCAGAACAACGTGGAG------------------------- | 23 | - | - | - | - | - | 1 | |
| -------------------------------------AAAGCACAGCAGAACAACGTGG--------------------------- | 22 | - | - | 1 | - | - | - | |
| -------------------------------------------------AACAACGTGGAGCACAAGGTC---------------- | 21 | - | 1 | - | - | - | - | |
| --------------------------------------AAGCACAGCAGAACAACGTGG--------------------------- | 21 | - | - | 1 | - | - | - | |
| -------------------------------------AAAGCACAGCAGAACAACGTGGAG------------------------- | 24 | - | - | - | 1 | - | - | |
| ------------------------------------CAAAGCACAGCAGAACAAC------------------------------- | 19 | - | - | 1 | - | - | - | |
| ------------------------------------------ACAGCAGAACAACGTGGAGC------------------------ | 20 | - | - | 1 | - | - | - | |
| -------------------------------------AAAGCACAGCAGAACAACGTGGA-------------------------- | 23 | - | - | - | - | 1 | - | |
| rat | actggacggcagccggctcatgaaagttcgtttagaCAAAGCACAGCAGAACAACGTGGAGCACAAGGTCgaaactttttctggtg | |||||||
| ************************************************************************************** | ||||||||
| rat | ((..((((((.....(((((((...(((((((............))).))))..)))).))).....))))........))..)). | 0.860 -17.20 | ||||||
| rat | chromosome:11:82677645:82677730:-1 | intergenic |
block267247 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.096 | no | no | 0.50/0.62 | 18/21/0.50 | 2.0 | 2.3 | 14 | 0 | 7 | 0 | 21 | -18 | 3arm | 1 | nd | 0.21 | 2 | 14 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ----------------------------------------CGGGUCU---------------------------------- | 5 | novel | ||||||
| seed | -----------------------------------------GGGUCUG--------------------------------- | 2 | novel | ||||||
| seed | ---------------------------------------ACGGGUC----------------------------------- | 2 | novel | ||||||
| seed | -----------------------------------CAGAACG--------------------------------------- | 2 | novel | ||||||
| seed | ---------------------------------CCCAGAA----------------------------------------- | 1 | novel | ||||||
| seed | -------------------------------------GAACGGG------------------------------------- | 1 | novel | ||||||
| seed | ------------------------------------------GGUCUGU-------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T2S1 | T3S1 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| --------------------------------------AACGGGTCTGTTGACTGA------------------------- | 18 | - | - | - | 2 | - | - | - | |
| ---------------------------------------ACGGGTCTGTTGACTGAGGA---------------------- | 20 | - | 2 | - | - | - | - | - | |
| ---------------------------------------ACGGGTCTGTTGACTGAGG----------------------- | 19 | 1 | - | - | - | - | - | - | |
| ----------------------------------------CGGGTCTGTTGACTGAGGAG--------------------- | 20 | - | - | - | - | 1 | - | - | |
| ----------------------------------------CGGGTCTGTTGACTGAGGA---------------------- | 19 | - | - | - | - | - | 1 | - | |
| -----------------------------------------GGGTCTGTTGACTGAGGA---------------------- | 18 | - | - | - | - | - | - | 1 | |
| ------------------------------------AGAACGGGTCTGTTGACTGAG------------------------ | 21 | - | - | - | - | 1 | - | - | |
| ----------------------------------CCAGAACGGGTCTGTTGAC---------------------------- | 19 | - | - | 1 | - | - | - | - | |
| ----------------------------------CCAGAACGGGTCTGTTGACT--------------------------- | 20 | - | - | - | 1 | - | - | - | |
| ---------------------------------------ACGGGTCTGTTGACTGAGGAG--------------------- | 21 | - | - | - | - | 1 | - | - | |
| --------------------------------GCCCAGAACGGGTCTGTTGAC---------------------------- | 21 | - | - | - | 1 | - | - | - | |
| ---------------------------------------ACGGGTCTGTTGACTGAG------------------------ | 18 | - | - | - | 1 | - | - | - | |
| rat | gtgtggccccgcaccgctcagtttagaggctgGCCCAGAACGGGTCTGTTGACTGAGGAGaaaaggcggagggaactacgc | ||||||||
| ********************************************************************************* | |||||||||
| rat | ((((((((((((....(((...((((.(((.(((((.....))))).)))..)))).))).....)))).))...)))))) | 0.970 -31.10 | |||||||
| rat | chromosome:13:70060864:70060944:-1 | intergenic ## {SimpF: oe = 0.86 -1 CpG} |
block468066 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.065 | no | no | 0.28/0.39 | 18/21/0.27 | 1.8 | 1.0 | 22 | 0 | 10 | 0 | 10 | -4 | 3arm | 1 | nd | 0.28 | 3 | 22 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ---------------------------------AAAAGUA----------------------- | 12 | novel | |||||||||
| seed | ------------------------------------AGUAAUC-------------------- | 8 | novel | |||||||||
| seed | ----------------------------------AAAGUAA---------------------- | 2 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------AAGTAATCCAGGATAGGA---------- | 18 | 3 | 1 | - | - | 2 | - | - | 1 | 1 | - | |
| --------------------------------TAAAAGTAATCCAGGATA------------- | 18 | - | 1 | 1 | - | - | - | 1 | - | 1 | - | |
| --------------------------------TAAAAGTAATCCAGGATAGG----------- | 20 | 1 | - | - | 1 | - | 1 | - | 1 | - | - | |
| --------------------------------TAAAAGTAATCCAGGATAGGA---------- | 21 | - | 1 | - | - | - | - | - | - | - | 1 | |
| ---------------------------------AAAAGTAATCCAGGATAGG----------- | 19 | - | 1 | - | - | - | - | - | - | - | 1 | |
| --------------------------------TAAAAGTAATCCAGGATAG------------ | 19 | - | - | - | - | 1 | - | - | 1 | - | - | |
| rat | gaagcttaggttctgtgtttcctatttactgcTAAAAGTAATCCAGGATAGGAaaaatagttt | |||||||||||
| *************************************************************** | ||||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000013366 ENSRNOG00000010064 Q91Y23_RAT | |||||||||||
| rat | .(((((....((((.....((((..(((((......)))))...))))..))))....))))) | 0.890 -13.50 | ||||||||||
| rat | chromosome:15:103539704:103539766:-1 | Same_strand|Intronic_coding|ENSRNOT00000013366|ENSRNOG00000010064 ## ENSRNOG00000010064|protein_coding|Q91Y23_RAT|Multidrug resistance protein 4 (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q91Y23] |
block603922 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.224 | no | no | 0.48/0.63 | 18/24/0.68 | 3.0 | 2.5 | 22 | 0 | 7 | 0 | 16 | -20 | 3arm | 9 | nd | 0.30 | 3 | 22 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ---------------------------------AGCCCAG---------------------------------------- | 6 | novel | ||||||
| seed | ----------------------------------GCCCAGU--------------------------------------- | 4 | novel | ||||||
| seed | -------------------------------GGAGCCC------------------------------------------ | 4 | novel | ||||||
| seed | ---------------------------------------GUGACAC---------------------------------- | 3 | novel | ||||||
| seed | ------------------------------------CCAGUGA------------------------------------- | 2 | novel | ||||||
| seed | -------------------------------------------CACCAUC------------------------------ | 1 | novel | ||||||
| seed | ----------------------------------------------CAUCGAG--------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------GACACCA-------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| --------------------------------GAGCCCAGTGACACCATCGAGAAC------------------------ | 24 | - | 2 | - | - | 3 | - | - | |
| ------------------------------TGGAGCCCAGTGACACCATC------------------------------ | 20 | - | 1 | 2 | 1 | - | - | - | |
| ---------------------------------AGCCCAGTGACACCATCGAGAAC------------------------ | 23 | 1 | - | 1 | - | 1 | - | - | |
| --------------------------------------AGTGACACCATCGAGAAC------------------------ | 18 | - | - | - | 1 | - | - | 1 | |
| --------------------------------------AGTGACACCATCGAGAACG----------------------- | 19 | - | - | - | - | - | 1 | - | |
| -----------------------------------CCCAGTGACACCATCGAGA-------------------------- | 19 | - | - | - | - | - | - | 1 | |
| -----------------------------------CCCAGTGACACCATCGAGAAC------------------------ | 21 | - | - | - | 1 | - | - | - | |
| ----------------------------------------TGACACCATCGAGAACGTGAA------------------- | 21 | - | - | - | 1 | - | - | - | |
| --------------------------------GAGCCCAGTGACACCATCG----------------------------- | 19 | - | 1 | - | - | - | - | - | |
| ---------------------------------AGCCCAGTGACACCATCG----------------------------- | 18 | - | - | - | - | - | 1 | - | |
| ------------------------------------------ACACCATCGAGAACGTGAAG------------------ | 20 | - | 1 | - | - | - | - | - | |
| ---------------------------------------------CCATCGAGAACGTGAAGGC---------------- | 19 | - | 1 | - | - | - | - | - | |
| rat | ccctgactggcaagaccatcaccctggaggTGGAGCCCAGTGACACCATCGAGAACGTGAAGGCcaagatccaggatagg | ||||||||
| ******************************************************************************** | |||||||||
| ------------------------------------------------------------------------------------------ | ENSRNOT00000020914 ENSRNOG00000015545 Cenpp | ||||||||
| rat | .((((.((((.....((.((((.((.((((((..((...))..)))).)).))...)))).)).......))))..)))) | 0.990 -24.00 | |||||||
| rat | chromosome:17:21029769:21029848:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000020914|ENSRNOG00000015545 ## ENSRNOG00000015545|protein_coding|Cenpp|centromere protein P Gene [Source:MGI Symbol;Acc:MGI:1913586] |
block812143 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.512 | no | no | 0.37/0.63 | 19/23/0.64 | 0.3 6.5 | 0.0 6.8 | 3 8 | 0 0 | 1 3 | 0 0 | 10 18 | 9 -9 | 5arm 5arm_loop | 1 1 | nd nd | 0.35 0.30 | 3 3 | 11 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------GCUGGGU------------------------------------------------------ | 2 | novel | ||
| seed | --------------------------GGGUAAA--------------------------------------------------- | 2 | novel | ||
| seed | ------------------------------AAAACAU----------------------------------------------- | 2 | novel | ||
| seed | ------------AGUCCUU----------------------------------------------------------------- | 2 | novel | ||
| seed | ---------------------------GGUAAAA-------------------------------------------------- | 1 | novel | ||
| seed | -------------------CCCUGCU---------------------------------------------------------- | 1 | novel | ||
| seed | -----------CAGUCCU------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T5S1 | |||
| ----------------------TGCTGGGTAAAACATTGGTC------------------------------------------ | 20 | 1 | 1 | - | |
| -----------CAGTCCTTCCCTGCTGGGT------------------------------------------------------ | 19 | - | - | 2 | |
| -----------------------------TAAAACATTGGTCGAGGTT------------------------------------ | 19 | 1 | - | 1 | |
| --------------------------GGGTAAAACATTGGTCGAGGT------------------------------------- | 21 | - | - | 1 | |
| ----------TCAGTCCTTCCCTGCTGGGT------------------------------------------------------ | 20 | - | - | 1 | |
| -------------------------TGGGTAAAACATTGGTCGAGGTT------------------------------------ | 23 | - | - | 1 | |
| -------------------------TGGGTAAAACATTGGTCGAG--------------------------------------- | 20 | - | - | 1 | |
| ------------------TCCCTGCTGGGTAAAACATT---------------------------------------------- | 20 | - | - | 1 | |
| rat | acagctgtctTCAGTCCTTCCCTGCTGGGTAAAACATTGGTCGAGGTTaaacagtgagtgctgtacggggaacagaaacacctg | ||||
| ************************************************************************************ | |||||
| rat | .(((.(((.(((.((...((((((...((((...(((((............)))))..))))...)))))))).)))))).))) | 0.740 -20.60 | |||
| rat | chromosome:19:40005845:40005928:1 | intergenic |
block881611 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.458 | no | no | 0.35/0.50 | 18/23/0.42 | 4.8 1.3 | 5.6 1.8 | 25 6 | 0 0 | 3 3 | 0 0 | 16 2 | -5 10 | 3arm 3arm | 1 1 | nd nd | 0.26 0.18 | 5 3 | 31 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------GGAUUCG-------------------------------- | 5 | novel | ||
| seed | ---------------------------------------------UCGAAGU---------------------------- | 5 | novel | ||
| seed | ----------------------------------------------CGAAGUG--------------------------- | 4 | novel | ||
| seed | --------------------------------------------------------GGGAACU----------------- | 3 | novel | ||
| seed | ----------------------------------------UGGAUUC--------------------------------- | 3 | novel | ||
| seed | -------------------------------------UCUUGGA------------------------------------ | 3 | novel | ||
| seed | --------------------------------------CUUGGAU----------------------------------- | 3 | novel | ||
| seed | -------------------------------------------AUUCGAA------------------------------ | 1 | novel | ||
| seed | -----------------------------------------------------------AACUAUA-------------- | 1 | novel | ||
| seed | -------------------------------------------------------UGGGAAC------------------ | 1 | novel | ||
| seed | ----------------------------------------------------GCUUGGG--------------------- | 1 | novel | ||
| seed | ------------------------------------------GAUUCGA------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S1 | |||
| --------------------------------------------TTCGAAGTGCTTGGGAACT----------------- | 19 | 3 | - | 2 | |
| ----------------------------------------TGGATTCGAAGTGCTTGGGAACT----------------- | 23 | - | 1 | 3 | |
| ---------------------------------------------TCGAAGTGCTTGGGAACTA---------------- | 19 | - | - | 3 | |
| ---------------------------------------TTGGATTCGAAGTGCTTGG---------------------- | 19 | - | - | 3 | |
| -------------------------------------TCTTGGATTCGAAGTGCTTG----------------------- | 20 | 2 | - | 1 | |
| ------------------------------------TTCTTGGATTCGAAGTGCT------------------------- | 19 | - | - | 3 | |
| -------------------------------------------------------TGGGAACTATATTCAGGGA------ | 19 | - | - | 2 | |
| ---------------------------------------------TCGAAGTGCTTGGGAACT----------------- | 18 | - | 1 | - | |
| ----------------------------------------------------------GAACTATATTCAGGGAATTG-- | 20 | - | - | 1 | |
| ------------------------------------------GATTCGAAGTGCTTGGGAACT----------------- | 21 | 1 | - | - | |
| ---------------------------------------------------TGCTTGGGAACTATATTCAG--------- | 20 | - | - | 1 | |
| -------------------------------------------------------TGGGAACTATATTCAGGGAATT--- | 22 | 1 | - | - | |
| ----------------------------------------TGGATTCGAAGTGCTTGG---------------------- | 18 | - | - | 1 | |
| ------------------------------------------------------TTGGGAACTATATTCAGGGAA----- | 21 | - | 1 | - | |
| -----------------------------------------GGATTCGAAGTGCTTGGGAACT----------------- | 22 | - | 1 | - | |
| rat | gctgattgctttatagattcctctgtggatttttttTTCTTGGATTCGAAGTGCTTGGGAACTATATTCAGGGAATTGcc | ||||
| ******************************************************************************** | |||||
| ------------------------------------------------------------------------------------------ | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | ||||
| rat | ((.((((.((((((((.(((((((.(((((((.........))))))).)).....))))))))))...))).)))))). | 0.740 -14.90 | |||
| rat | chromosome:1:129023872:129023951:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] ## {Repeats: dust 129023914 129023916 0 class=dust} |
block998885 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.076 | no | no | 0.39/0.52 | 18/23/0.60 | 1.8 | 2.3 | 21 | 0 | 4 | 0 | 29 | -4 | 5arm_loop | 1 | nd | 0.17 | 1 | 25 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------------------------------------GGCUUUU-------------------------------------------------------------------- | 11 | novel | |||
| seed | ------------------------------------UGGCUUU--------------------------------------------------------------------- | 8 | novel | |||
| seed | ------------------------------UCCUUUU--------------------------------------------------------------------------- | 5 | novel | |||
| seed | -------------------------------CCUUUUG-------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| ------------------------------------TGGCTTTTCTGCTCTATGGGCCA----------------------------------------------------- | 23 | 1 | - | 4 | 1 | |
| ------------------------------------TGGCTTTTCTGCTCTATGG--------------------------------------------------------- | 19 | - | 1 | 4 | - | |
| -----------------------------------TTGGCTTTTCTGCTCTAT----------------------------------------------------------- | 18 | - | - | 5 | - | |
| -----------------------------TTCCTTTTGGCTTTTCTGCTCT------------------------------------------------------------- | 22 | 2 | - | 3 | - | |
| -----------------------------------TTGGCTTTTCTGCTCTATGG--------------------------------------------------------- | 20 | - | - | 3 | - | |
| ------------------------------TCCTTTTGGCTTTTCTGCTCT------------------------------------------------------------- | 21 | 1 | - | - | - | |
| rat | ctagctggctggttggtgggggggggaacTTCCTTTTGGCTTTTCTGCTCTATGGGCCAtccaagagagagagtcgagtctcttccctaaggaatgtgtggcagccggagag | |||||
| **************************************************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | |||||
| rat | ((..(((((((.((..(((((..((((.......((((((.(((((.((((.(((.....))))))))))))))))))))))..)))))..))........)))))))..)) | 0.970 -41.71 | ||||
| rat | chromosome:1:129035213:129035324:1 | Same_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
block1067177 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.164 | no | no | 0.39/0.45 | 18/25/0.16 | 2.5 | 0.0 | 24 | 0 | 3 | 0 | 15 | -6 | 3arm | 1 | nd | 0.21 | 2 | 31 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------CAGAAUC-------------------------- | 16 | novel | ||
| seed | ---------------------------------------------AGAUGAC-------------------------------- | 11 | novel | ||
| seed | ----------------------------------------------------AGAAUCA------------------------- | 1 | novel | ||
| seed | ----------------------------------------------GAUGACA------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------ACAGAAU--------------------------- | 1 | novel | ||
| seed | -------------------------------------------------GACAGAA---------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------------ACAGAATCATATGTCCCAC--------------- | 19 | 1 | 14 | - | |
| --------------------------------------------TAGATGACAGAATCATATGTCCCAC--------------- | 25 | - | 10 | - | |
| ---------------------------------------------AGATGACAGAATCATATGTCCCAC--------------- | 24 | - | 1 | - | |
| --------------------------------------------------ACAGAATCATATGTCCCACGCA------------ | 22 | - | 1 | - | |
| --------------------------------------------TAGATGACAGAATCATATGTCCC----------------- | 23 | - | 1 | - | |
| ------------------------------------------------TGACAGAATCATATGTCCCAC--------------- | 21 | - | 1 | - | |
| ---------------------------------------------------CAGAATCATATGTCCCAC--------------- | 18 | - | - | 1 | |
| -------------------------------------------------GACAGAATCATATGTCCCAC--------------- | 20 | - | 1 | - | |
| rat | agaatttaacagatggctaggggttcaggtggcttctgtaaccaTAGATGACAGAATCATATGTCCCACgcaacgaggaattct | ||||
| ************************************************************************************ | |||||
| rat | (((((((........((...(((..((.((((.((((((...........)))))))))).)).)))..))......))))))) | 0.970 -20.14 | |||
| rat | chromosome:20:13199846:13199929:-1 | intergenic |
block1072305 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.541 | no | no | 0.32/0.39 | 18/21/0.06 | 1.1 | 1.2 | 16 | 0 | 8 | 0 | 8 | -1 | 5arm_loop | 1 | nd | 0.05 | 1 | 16 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | ----------UUUUAAA--------------------------------------------------------------- | 6 | novel | |||||||
| seed | ------------UUAAAGC------------------------------------------------------------- | 4 | novel | |||||||
| seed | ---------UUUUUAA---------------------------------------------------------------- | 3 | novel | |||||||
| seed | -------------UAAAGCC------------------------------------------------------------ | 2 | novel | |||||||
| seed | -----------UUUAAAG-------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ---------TTTTTAAAGCCAACCTTG----------------------------------------------------- | 18 | - | - | 2 | - | - | 1 | 1 | - | |
| -----------TTTAAAGCCAACCTTGTG--------------------------------------------------- | 18 | 1 | 1 | - | 1 | - | - | - | 1 | |
| ---------TTTTTAAAGCCAACCTTGT---------------------------------------------------- | 19 | - | - | - | - | - | 1 | 1 | - | |
| --------ATTTTTAAAGCCAACCTTG----------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | 1 | |
| ------------TTAAAGCCAACCTTGTGT-------------------------------------------------- | 18 | - | - | - | - | 1 | - | - | 1 | |
| --------ATTTTTAAAGCCAACCTTGTG--------------------------------------------------- | 21 | - | - | - | - | - | 1 | - | - | |
| ----------TTTTAAAGCCAACCTTGTG--------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | |
| rat | tctaaggcATTTTTAAAGCCAACCTTGTGTatttctcatctgtcacagagcttgttgcttttaaaaggtaattcctaagt | |||||||||
| ******************************************************************************** | ||||||||||
| rat | .((.(((..(((((((((.((((((((((..............)))).))...)))).)))))))))......))).)). | 0.590 -10.74 | ||||||||
| rat | chromosome:20:22195324:22195403:-1 | intergenic |
block1089679 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.047 | no | no | 0.54/0.63 | 18/24/0.13 | 1.7 0.0 0.0 | 0.5 0.0 0.0 | 6 1 8 | 0 0 0 | 3 1 5 | 0 0 0 | 16 13 9 | -20 -6 -3 | 3arm_loop 3arm_loop 3arm_loop | 2 2 2 | nd nd nd | 0.50 0.39 0.26 | 10 5 2 | 15 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------CCGCGAG-------------------- | 8 | novel | |||||
| seed | --------------------------UUGCUAC-------------------------- | 3 | novel | |||||
| seed | ---------------------UGCUUUU------------------------------- | 1 | novel | |||||
| seed | ------------------------UUUUGCU---------------------------- | 1 | novel | |||||
| seed | -----------------------------CUACCGC----------------------- | 1 | novel | |||||
| seed | -----------------------CUUUUGC----------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | |||
| -------------------------------ACCGCGAGGAAGAAGGTGC--------- | 19 | 1 | 1 | - | 2 | 1 | 3 | |
| -------------------------TTTGCTACCGCGAGGAAG---------------- | 18 | - | - | 2 | 1 | - | - | |
| ----------------------GCTTTTGCTACCGCGAGGAAG---------------- | 21 | - | - | 1 | - | - | - | |
| -----------------------CTTTTGCTACCGCGAGGA------------------ | 18 | - | - | - | - | 1 | - | |
| ----------------------------GCTACCGCGAGGAAGAAG------------- | 18 | - | - | - | - | - | 1 | |
| --------------------CTGCTTTTGCTACCGCGAGGAAGA--------------- | 24 | - | - | - | - | 1 | - | |
| rat | aaaagttggcgcttcctctcCTGCTTTTGCTACCGCGAGGAAGAAGGTGCacagacttt | |||||||
| *********************************************************** | ||||||||
| rat | .((((((.((((((.((.((((((..........)).)))))).))))))...)))))) | 0.910 -18.50 | ||||||
| rat | chromosome:20:661329:661387:1 | intergenic |
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