other hairpins
novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH (41 loci)
sblock9879 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.585 | no | no | 0.58/0.67 | 19/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 26 8 | -12 1 | 5arm_loop 3arm | 16 16 | nd nd | 0.74 0.38 | 13 4 | 2 | 2 | 0 | 16 |
| reads | miRBase family seed | |||
| seed | ---------------------------GGCUGCC------------------------------------------ | 1 | novel | |
| seed | ------------------------------------------------AGCUGUC--------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S2 | |||
| -----------------------------------------------CAGCTGTCAGGAGCGCAGGAC-------- | 21 | 1 | - | |
| --------------------------AGGCTGCCTTCCACACAAC------------------------------- | 19 | - | 1 | |
| rat | cggaaccactcccccaactctgttgcAGGCTGCCTTCCACACAACtgCAGCTGTCAGGAGCGCAGGACctactctg | |||
| **************************************************************************** | ||||
| rat | ((((.....(((.....((((...(((.(((((.............))))))))..))))....))).....)))) | 0.660 -16.72 | ||
| rat | chromosome:5:164522305:164522380:1 | intergenic |
sblock8878 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.277 | no | no | 0.58/0.63 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 17 16 | -8 -3 | 5arm_loop 3arm_loop | 137 137 | nd nd | 0.58 0.47 | 9 4 | 3 | 3 | 0 | 5 |
| reads | miRBase family seed | ||||
| seed | ------------------AGGCUGU-------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------AUCCCAG--------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T3S1 | T5S2 | |||
| -----------------AAGGCTGTGGGCAAGGTCA--------------------------------- | 19 | 1 | - | 1 | |
| ----------------------------------CATCCCAGAGCTGAACGGG---------------- | 19 | - | 1 | - | |
| rat | catccactggtgctaccAAGGCTGTGGGCAAGGTCATCCCAGAGCTGAACGGGaaactcactggcatgg | ||||
| ********************************************************************* | |||||
| rat | ((((((.((((....((..((((.((((.........)))).))))....))...)).)).))).))). | 0.830 -20.90 | |||
| rat | chromosome:4:25140043:25140111:1 | intergenic |
novel_lenNOK_multiarm_nonpairedHIGH (41 loci)
block2216748 [novel_lenNOK_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.350 | no | no | 0.50/0.58 | 19/24/0.67 | 0.0 0.0 | 0.6 0.0 | 5 1 | 0 0 | 2 1 | 0 0 | 6 14 | 0 -12 | 5arm 5arm_loop_3arm | 10 10 | nd nd | 0.42 0.46 | 2 5 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------GACUCCA---------------------------------------- | 5 | novel | |
| seed | ---------------UCCCUGG-------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ------TGACTCCAGTCCCTGGAAGA---------------------------- | 20 | 1 | 2 | |
| ------TGACTCCAGTCCCTGGAAG----------------------------- | 19 | - | 2 | |
| --------------GTCCCTGGAAGATAAGTTCCCAGT---------------- | 24 | - | 1 | |
| rat | tgtctcTGACTCCAGTCCCTGGAAGATAAGTTCCCAGTaacctgacccaatgat | |||
| ****************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058202 ENSRNOG00000038226 | |||
| rat | .(((..((..((..((..((((..((.....))))))..))..))..))..))) | 0.820 -8.70 | ||
| rat | chromosome:7:59402816:59402869:1 | Same_strand|Intronic_coding|ENSRNOT00000058202|ENSRNOG00000038226 ## ENSRNOG00000038226|protein_coding|| |
block1696238 [novel_lenNOK_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.219 | no | no | 0.50/0.58 | 19/24/0.67 | 0.0 0.0 | 0.6 0.0 | 5 1 | 0 0 | 2 1 | 0 0 | 5 13 | 0 -12 | 5arm 5arm_loop_3arm | 10 10 | nd nd | 0.37 0.46 | 3 5 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------GACUCCA----------------------------------------- | 5 | novel | |
| seed | --------------UCCCUGG--------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| -----TGACTCCAGTCCCTGGAAGA----------------------------- | 20 | 1 | 2 | |
| -----TGACTCCAGTCCCTGGAAG------------------------------ | 19 | - | 2 | |
| -------------GTCCCTGGAAGATAAGTTCCCAGT----------------- | 24 | - | 1 | |
| rat | gtctcTGACTCCAGTCCCTGGAAGATAAGTTCCCAGTaaccctagttcagtcac | |||
| ****************************************************** | ||||
| rat | ((..((((((...((..((((..((.....))))))..))...))).)))..)) | 0.990 -9.90 | ||
| rat | chromosome:4:164264164:164264217:1 | intergenic |
sblock10069 [novel_lenNOK_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.043 | no | no | 0.48/0.56 | 18/25/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 22 | 32 3 | 5arm 3arm | 2 2 | nd nd | 0.39 0.32 | 5 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -ACAGCAU------------------------------------------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------------------------------------CAGCGAU--------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| TACAGCATCAGGGAAGGG--------------------------------------------------------------------------------------- | 18 | 1 | |
| ----------------------------------------------------------TCAGCGATCTGATCCTATAGCTAGG---------------------- | 25 | 1 | |
| rat | TACAGCATCAGGGAAGGGgggtgggcggggaccagacacagctctgaagcatatggccTCAGCGATCTGATCCTATAGCTAGGccccacctcctaaagtttctgg | ||
| ********************************************************************************************************* | |||
| rat | ..(((.....(((.((((((((.(((.((((.((((....((..(((.((.....)).)))))..)))).))))...)))..))))).)))))).......))). | 0.710 -38.30 |
| rat | chromosome:6:122544563:122544667:-1 | intergenic |
sblock10275 [novel_lenNOK_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.108 | no | no | 0.50/0.55 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 32 3 | 3 26 | 5arm 3arm | 1 1 | nd nd | 0.45 0.33 | 5 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------------GGUAGAG------------- | 1 | novel |
| seed | ---------------------------------AGGCAGA------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| -------------------------------------------------------------------------------------AGGTAGAGAGCTCAGTGT--- | 18 | 1 | |
| --------------------------------AAGGCAGACAGACAGTGGGA------------------------------------------------------ | 20 | 1 | |
| rat | cctcacttagcgctgtgtttccagggtccccaAAGGCAGACAGACAGTGGGAtgtgcttgcccctcatcctggtttcccccctggAGGTAGAGAGCTCAGTGTagg | ||
| ********************************************************************************************************** | |||
| rat | (((((((.(((.((.((..(((((((........((.((((.....(((((..((....))..)))))....)))).)))))))))..)).)).))).)))).))) | 0.400 -38.10 |
| rat | chromosome:6:42647994:42648099:1 | intergenic |
sblock10280 [novel_lenNOK_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.263 | no | no | 0.33/0.53 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 27 | 23 2 | 5arm 3arm | 1 6 | nd nd | 0.42 0.39 | 3 2 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -GGCAUCA---------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------GGUUUUU------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| ---------------------------------------------------TGGTTTTTTTTTCCCTCT--------------------------- | 18 | - | 1 | |
| GGGCATCAAAGAGAGTAGC----------------------------------------------------------------------------- | 19 | 1 | - | |
| rat | GGGCATCAAAGAGAGTAGCtactgaggttgagtagagacagtttctactacTGGTTTTTTTTTCCCTCTgaatatttcctttaaatttttagtcca | |||
| ************************************************************************************************ | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000005804 ENSRNOG00000004269 Myt1l | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044310 ENSRNOG00000004269 Myt1l | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040421 ENSRNOG00000004269 Myt1l | |||
| rat | ((((...((((..((((......((((..(((.(((..((((.......))))..))).)))..))))....))))..)))).........)))). | 0.630 -19.10 | ||
| rat | chromosome:6:47776701:47776796:1 | Same_strand|Intronic_coding|ENSRNOT00000005804|ENSRNOG00000004269 ## Same_strand|Boundary_non-coding|ENSRNOT00000005723|ENSRNOG00000004269 ## ENSRNOG00000004269|protein_coding|Myt1l|Myelin transcription factor 1-like protein (MyT1L protein) (Neural zinc finger factor 1) (NZF-1). [Source:UniProtKB/Swiss-Prot;Acc:P70475] ## {Repeats: dust 47776755 47776763 0 class=dust} |
sblock10355 [novel_lenNOK_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.518 | no | no | 0.44/0.63 | 18/20/0.25 | 0.0 0.0 | 0.7 0.0 | 3 1 | 0 0 | 2 1 | 0 0 | 25 12 | 8 26 | 5arm 3arm | 1 1 | nd nd | 0.44 0.37 | 3 3 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------GAGGUAG-------------------------------------------------------------------------------- | 3 | let-7a/7b/7c/7d/7e/7f/7i/miR-98 | ||
| seed | -----------------------------------------------------------------------------------GACCUUG----------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S2 | |||
| -------------------------TGAGGTAGGATTGGGATA---------------------------------------------------------------------- | 18 | 1 | 1 | - | |
| -------------------------TGAGGTAGGATTGGGATAGC-------------------------------------------------------------------- | 20 | - | 1 | - | |
| ----------------------------------------------------------------------------------GGACCTTGACCCGTGGACT------------ | 19 | - | - | 1 | |
| rat | tggcgccagctccatcttgatgttcTGAGGTAGGATTGGGATAGCcgtgacccttagggaagcgaggattccttctcttatgGGACCTTGACCCGTGGACTtgcttggtgact | ||||
| ***************************************************************************************************************** | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000011599 ENSRNOG00000008754 Flvcr2 | ||||
| rat | .((((((((((((((.((((.(((((...((((((..((((....(((..(((...)))..))).....))))..))))))))))).))))...)))))...))).)))).)) | 0.740 -33.70 | |||
| rat | chromosome:6:109923921:109924033:1 | Same_strand|Intronic_coding|ENSRNOT00000011599|ENSRNOG00000008754 ## ENSRNOG00000008754|protein_coding|Flvcr2|major facilitator superfamily domain containing 7C Gene [Source:MGI Symbol;Acc:MGI:2384974] |
sblock10356 [novel_lenNOK_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.375 | no | no | 0.50/0.53 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 31 3 | 6 30 | 5arm 3arm | 1 1 | nd nd | 0.50 0.32 | 4 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------AGUCCUU--------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------------------------CACCUCC-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T4S2 | |||
| --------------------------------------------------------------------------------------------CCACCTCCCCTACAAACAT--- | 19 | - | 1 | |
| -------------------------------CAGTCCTTGGTTAGAGCA----------------------------------------------------------------- | 18 | 1 | - | |
| rat | ctgctgtcttgggggtttgtgtgaggttagtCAGTCCTTGGTTAGAGCAtatcttgaagtctggggttccttttagagcttctgatcaacatCCACCTCCCCTACAAACATgta | |||
| ****************************************************************************************************************** | ||||
| rat | .((((((..((((((...(((.((.(((.(((((..(((....((((...(((((.......)))))..))))..)))...))))).))).)))))..))))))...))).))) | 0.400 -29.10 | ||
| rat | chromosome:6:110766991:110767104:1 | intergenic |
sblock10531 [novel_lenNOK_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.032 | no | no | 0.26/0.68 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 35 | 37 0 | 5arm 3arm | 1 1 | nd nd | 0.37 0.32 | 4 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------CACAGGU---------------------------------------------- | 1 | novel | |
| seed | -UAGUUCU--------------------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T4S2 | |||
| -----------------------------------------------------------GCACAGGTGGCCAACGTGC----------------------------------- | 19 | - | 1 | |
| CTAGTTCTTTATTTAGTCA---------------------------------------------------------------------------------------------- | 19 | 1 | - | |
| rat | CTAGTTCTTTATTTAGTCAaatagcaaatgctcattggtcatggcaagcctgctgcacaGCACAGGTGGCCAACGTGCgtacctatggacggtgttagtctagaggaagaaca | |||
| ***************************************************************************************************************** | ||||
| rat | ...(((((((.(((((.....(((((..((..(((.(((((((((..(((((.(((...)))))))).))))...))...))).)))..)).)))))..))))).))))))). | 0.630 -35.20 | ||
| rat | chromosome:6:137074983:137075095:1 | intergenic |
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