other hairpins
novel_lenNOK_multiarm_nonpairedHIGH (41 loci)
sblock979 [novel_lenNOK_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.174 | no | no | 0.27/0.37 | 19/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 36 2 | 0 21 | 5arm 3arm | 1 1 | nd nd | 0.32 0.32 | 3 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------------------UAACAAU---------------- | 1 | novel | |
| seed | -------------------------------------CCUUAAC--------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| ------------------------------------GCCTTAACTTGTAGCTTAA---------------------------------------------------- | 19 | 1 | - | |
| -----------------------------------------------------------------------------------ATAACAATTTCAAGATTGTCAG-- | 22 | - | 1 | |
| rat | gcagaatgcgtttgaaaagttagaagaatattagaaGCCTTAACTTGTAGCTTAAttttgttttgagaacaaaaggacttttgATAACAATTTCAAGATTGTCAGca | |||
| *********************************************************************************************************** | ||||
| rat | ((.((.....(((((((.((........(((((((((((((...((((..(((((.......))))).)))))))).)))))))))))..)))))))....)).)). | 0.430 -20.00 | ||
| rat | chromosome:1:208429135:208429241:-1 | intergenic |
sblock9902 [novel_lenNOK_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.281 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 8 36 | 29 4 | 5arm 3arm | 1 1 | nd nd | 0.44 0.33 | 4 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------CUCGCCU---------------------------------------------- | 1 | novel | |
| seed | ---------GUUUUGG------------------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T4S2 | |||
| ----------------------------------------------------------------TCTCGCCTCTTTGCCTGA------------------------------------ | 18 | 1 | - | |
| --------TGTTTTGGTCCCCCAGAG-------------------------------------------------------------------------------------------- | 18 | - | 1 | |
| rat | caccttttTGTTTTGGTCCCCCAGAGgatttctttggcccagatgttgagtcaccatagaggtcTCTCGCCTCTTTGCCTGAaaagattggtcctctcattgagcacccaggggagtg | |||
| ********************************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000062049 ENSRNOG00000004706 RGD1564128_predicted | |||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000062048 ENSRNOG00000004706 RGD1564128_predicted | |||
| rat | (((..(((((...((.((....((((((((((((((((..(((.((.(((..(((.....)))..))))).)))..)))...)))))..))))))))....)).))..)))))..))) | 0.510 -32.90 | ||
| rat | chromosome:6:1329033:1329150:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000006360|ENSRNOG00000004706 ## Opposite_strand|Intronic_coding|ENSRNOT00000062049|ENSRNOG00000004706 ## ENSRNOG00000004706|protein_coding|RGD1564128_predicted| |
sblock9939 [novel_lenNOK_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.028 | no | no | 0.42/0.61 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 4 1 | 0 0 | 2 1 | 0 0 | 16 39 | 26 -4 | 5arm 3arm_loop | 1 1 | nd nd | 0.33 0.32 | 2 3 | 5 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------GGGGGUU---------------------------------------------------------------------------------------------- | 4 | novel | ||
| seed | -------------------------------------------------------------CUCCCUA-------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T4S2 | |||
| ----------------TGGGGGTTTGGTTTGGGG------------------------------------------------------------------------------------ | 18 | 3 | - | 1 | |
| ------------------------------------------------------------GCTCCCTATTTATAAGCAG--------------------------------------- | 19 | - | 1 | - | |
| rat | taaggttccaaatattTGGGGGTTTGGTTTGGGGttggttttggtgcacacatgagaaggGCTCCCTATTTATAAGCAGctatctgcagctcatatctcccaagtctttgtgtccctt | ||||
| ********************************************************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000021998 ENSRNOG00000016396 Fbxo11 | ||||
| rat | .((((...((((.(((((((((..((..(((.((.((((.....(((....(((((.(((....))).)))))..))))))).)).)))..))...))))))))).))))....)))) | 0.530 -33.30 | |||
| rat | chromosome:6:11555575:11555692:-1 | Same_strand|Intronic_coding|ENSRNOT00000021998|ENSRNOG00000016396 ## ENSRNOG00000016396|protein_coding|Fbxo11|F-box only protein 11. [Source:UniProtKB/Swiss-Prot;Acc:Q7TSL3] |
novel_lenNOK_shortStem_mirtron_nonpairedHIGH (41 loci)
block20653 [novel_lenNOK_shortStem_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.045 | no | no | 0.67/0.67 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 9 | 5arm | 3 | 0 | 0.39 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -CCCUUGC------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| TCCCTTGCCTCCTGCCAG-------------------------------------------- | 18 | 1 | |
| rat | TCCCTTGCCTCCTGCCAGgtgaaagcccagcggctgccttcacatagccgaggcatgctgga | ||
| ************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000004753 ENSRNOG00000003463 Srebf1 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000004488 ENSRNOG00000003463 Srebf1 | ||
| +++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000047053 ENSRNOG00000003463 Srebf1 | ||
| +++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000042979 ENSRNOG00000003463 Srebf1 | ||
| rat | (((..((((((..((...(((((((((....))))...)))))...)).))))))....))) | 0.940 -23.30 |
| rat | chromosome:10:46467133:46467194:-1 | Same_strand|Intronic_coding|ENSRNOT00000004753|ENSRNOG00000003463 ## Same_strand|Boundary_non-coding|ENSRNOT00000058155|ENSRNOG00000003463 ## ENSRNOG00000003463|protein_coding|Srebf1|Sterol regulatory element-binding protein 1 (SREBP-1) (Sterol regulatory element-binding transcription factor 1) (Adipocyte determination- and differentiation-dependent factor 1) (ADD1) [Contains: Processed sterol regulatory element-binding protein 1] (Fr [Source:UniProtKB/Swiss-Prot;Acc:P56720] |
block55600 [novel_lenNOK_shortStem_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.968 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 1 | 29 | 3arm | 1 | 0 | 0.32 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------------------UCCCUUU------------ | 2 | miR-204/211 |
| len | cloning frequencies | ||
| T2S2 | |||
| -------------------------------------------------------------------------------------------TTCCCTTTGCCTCTCTCAG- | 19 | 2 | |
| rat | cctagctagccagatcagccgaatcaatggggtgacagatattgcagccagatcactctcacatcaggccagtcactgcttaccagtcattTTCCCTTTGCCTCTCTCAGg | ||
| *************************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>> | ENSRNOT00000003332 ENSRNOG00000002452 Txndc11 | ||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.................................................. | ENSRNOT00000063468 ENSRNOG00000041715 7SK | ||
| rat | (((((..((.((((......(((..((((.((((((((..((((..(((.(((.........))).)))))))..))).)))))...)))))))..)))).))..)).))) | 0.430 -18.20 |
| rat | chromosome:10:4479838:4479948:1 | Same_strand|Intronic_coding|ENSRNOT00000003332|ENSRNOG00000002452 ## ENSRNOG00000002452|protein_coding|Txndc11|thioredoxin domain containing 11 Gene [Source:MGI (curated);Acc:Txndc11-001] |
block73728 [novel_lenNOK_shortStem_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.127 | no | no | 0.32/0.32 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | 31 | 5arm | 1 | 2 | 0.32 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----AAGGCCA------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| ---TAAGGCCAAAAGAAACTAA-------------------------------------------------------------------------------- | 19 | 1 | |
| rat | aggTAAGGCCAAAAGAAACTAAgccacattttcatggaggctgttagccatggtaccgccatgtctgcccttccagaggcttaagaatctggtgacttctct | ||
| ****************************************************************************************************** | |||
| >>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000039444 ENSRNOG00000003226 MRIP_RAT | ||
| >>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000004357 ENSRNOG00000003226 MRIP_RAT | ||
| >>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040865 ENSRNOG00000003226 MRIP_RAT | ||
| rat | ((..(((..((..(((..(((((((......((.((((((..((.((.(((((.....))))).)))).))))))))))))).))..)))..)).)))..)) | 0.990 -27.90 |
| rat | chromosome:10:46081230:46081331:1 | Same_strand|Boundary_non-coding|ENSRNOT00000004374|ENSRNOG00000003226 ## Same_strand|Intronic_coding|ENSRNOT00000039444|ENSRNOG00000003226 ## ENSRNOG00000003226|protein_coding|MRIP_RAT|Myosin phosphatase Rho-interacting protein (Rho-interacting protein 3) (p116Rip) (RIP3). [Source:UniProtKB/Swiss-Prot;Acc:Q9ERE6] |
block74049 [novel_lenNOK_shortStem_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.125 | no | no | 0.50/0.50 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | 31 | 5arm | 1 | 4 | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----UAAGGUC--------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| ---GTAAGGTCAGTGATGGTC----------------------------------------------------------------------------------------------- | 18 | 1 | |
| rat | tggGTAAGGTCAGTGATGGTCcgtgtggaccttggggagaataatagagggtcacctacctgcatgcccaaccttacttcccctcaaagtcttgcctacctatcaccctaacttag | ||
| ******************************************************************************************************************** | |||
| ------------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000058155 ENSRNOG00000003463 Srebf1 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000005237 ENSRNOG00000003847 4933439F18Rik | ||
| >>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000005101 ENSRNOG00000003729 Drg2 | ||
| rat | (((((.(((...((((((((..(((.((((.((((((.((((((....((((.............))))....))).))).)))))).)))))))..))).)))))))).))))). | 0.620 -32.52 |
| rat | chromosome:10:46720680:46720795:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000004488|ENSRNOG00000003463 ## Same_strand|Intronic_coding|ENSRNOT00000005237|ENSRNOG00000003847 ## Opposite_strand|Intronic_coding|ENSRNOT00000058155|ENSRNOG00000003463 ## Same_strand|Boundary_coding|ENSRNOT00000005101|ENSRNOG00000003729 ## ENSRNOG00000003729|protein_coding|Drg2|developmentally regulated GTP binding protein 2 Gene [Source:MGI (curated);Acc:Drg2-001] ## ENSRNOG00000003847|protein_coding|4933439F18Rik|RIKEN cDNA 4933439F18 gene Gene [Source:MGI Symbol;Acc:MGI:1914021] ## ENSRNOG00000003463|protein_coding|Srebf1|Sterol regulatory element-binding protein 1 (SREBP-1) (Sterol regulatory element-binding transcription factor 1) (Adipocyte determination- and differentiation-dependent factor 1) (ADD1) [Contains: Processed sterol regulatory element-binding protein 1] (Fr [Source:UniProtKB/Swiss-Prot;Acc:P56720] |
block77636 [novel_lenNOK_shortStem_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.031 | no | no | 0.37/0.37 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 11 | 5arm | 1 | 3 | 0.32 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---CCUGUAA---------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| --TCCTGTAAGTCTTTGCTTT----------------------------------------------------- | 19 | 1 | |
| rat | atTCCTGTAAGTCTTTGCTTTgttgctctttgtctgcatttcatcctagtataatatcagagacaaaccaggaa | ||
| ************************************************************************** | |||
| >>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000003983 ENSRNOG00000002886 Myh10 | ||
| >>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000030500 ENSRNOG00000002886 Myh10 | ||
| rat | .((((((...(((((((...(((((..((.((.........))....))..))))).)))))))....)))))) | 0.970 -15.30 |
| rat | chromosome:10:55501514:55501587:1 | Same_strand|Boundary_coding|ENSRNOT00000030500|ENSRNOG00000002886 ## ENSRNOG00000002886|protein_coding|Myh10|Myosin-10 (Myosin heavy chain 10) (Myosin heavy chain, non-muscle IIb) (Non-muscle myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin heavy chain, type B) (Non-muscle myosin heavy chain-B) (NMMHC- B). [Source:UniProtKB/Swiss-Prot;Acc:Q9JLT0] |
block160143 [novel_lenNOK_shortStem_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.096 | no | no | 0.61/0.61 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | 16 | 5arm | 1 | 3 | 0.39 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --CCUUUUG------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| -CCCTTTTGCCCTAAGGCC-------------------------------------------------------------- | 18 | 1 | |
| rat | tCCCTTTTGCCCTAAGGCCtcggatggtacactgtcaactcagcatacggagataccattgtcatgccttgcagactggat | ||
| ********************************************************************************* | |||
| +++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000002738 ENSRNOG00000001989 Alcam | ||
| rat | (((..(((((...(((((....(((((((..((((...........))))...))))))).....))))))))))..))). | 0.950 -21.20 |
| rat | chromosome:11:49581119:49581199:1 | Same_strand|Boundary_coding|ENSRNOT00000002738|ENSRNOG00000001989 ## ENSRNOG00000001989|protein_coding|Alcam|CD166 antigen precursor (Activated leukocyte cell adhesion molecule) (Protein MEMD) (HB2) (SB-10 antigen) (KG-CAM). [Source:UniProtKB/Swiss-Prot;Acc:O35112] |
block162655 [novel_lenNOK_shortStem_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.470 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 4 | 5arm | 1 | 2 | 0.39 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---AAAGACC-------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| --TAAAGACCCTCAGTTCTT---------------------------------------- | 18 | 1 | |
| rat | ggTAAAGACCCTCAGTTCTTcacctcttcatcgggagagcctctggggcgaagctcggcc | ||
| ************************************************************ | |||
| >>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000041087 ENSRNOG00000002141 Cd200 | ||
| rat | (((..((..((((((..(((..((........))..)))...)))))).....))..))) | 0.790 -16.30 |
| rat | chromosome:11:56955036:56955095:1 | Same_strand|Intronic_coding|ENSRNOT00000041087|ENSRNOG00000002141 ## ENSRNOG00000002141|protein_coding|Cd200|OX-2 membrane glycoprotein precursor (MRC OX-2 antigen) (CD200 antigen). [Source:UniProtKB/Swiss-Prot;Acc:P04218] |
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