other hairpins
novel_lenNOK_shortStem_mirtron_nonpairedHIGH (41 loci)
block2287616 [novel_lenNOK_shortStem_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.427 | no | no | 0.63/0.63 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | 28 | 3arm | 1 | 0 | 0.37 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------CAGGCCC------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| -----------------------------------------------------------------------------ACAGGCCCCTTCTCTCCAG- | 19 | 1 | |
| rat | ctagggtggatgggtgggaccaggggcgaggaacagctgcaggcttatagcccactggggactggcaccctgatgccACAGGCCCCTTCTCTCCAGg | ||
| ************************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>> | ENSRNOT00000018874 ENSRNOG00000014065 NP_001100277.1 | ||
| rat | ((.(((.(((.((((.((..(((((((.((...(((.((..(((.....))))))))....)).)).)))))...))....)))).))).))).)). | 0.750 -37.20 |
| rat | chromosome:8:21163852:21163948:-1 | Same_strand|Intronic_coding|ENSRNOT00000018874|ENSRNOG00000014065 ## ENSRNOG00000014065|protein_coding|NP_001100277.1|zinc finger protein 653 [Source:RefSeq_peptide;Acc:NP_001100277] |
block2382927 [novel_lenNOK_shortStem_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.410 | no | no | 0.67/0.67 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 9 | 5arm | 1 | 2 | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---CGUUGGU---------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| --GCGTTGGTGGCTGGACTG------------------------------------------------ | 18 | 1 | |
| rat | gtGCGTTGGTGGCTGGACTGagacggtgtgggtggaggagacacagggacggtactgtccccagggca | ||
| ******************************************************************** | |||
| >>>>>++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000061211 ENSRNOG00000020580 A230050P20Rik | ||
| >>>>>++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000027949 ENSRNOG00000020580 A230050P20Rik | ||
| rat | .(((.((((.(((...((((.....((((...........)))).....))))...))).)))).))) | 0.710 -19.70 |
| rat | chromosome:8:19896519:19896586:1 | Same_strand|Intronic_coding|ENSRNOT00000027949|ENSRNOG00000020580 ## ENSRNOG00000020580|protein_coding|A230050P20Rik|RIKEN cDNA A230050P20 gene Gene [Source:MGI Symbol;Acc:MGI:2441788] |
block2587803 [novel_lenNOK_shortStem_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.178 | no | no | 0.50/0.50 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 26 | 5arm | 1 | 3 | 0.44 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----AGUGGCC--------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| ----AAGTGGCCACCCCAAAAA----------------------------------------------------------------------------------- | 18 | 1 | |
| rat | gagtAAGTGGCCACCCCAAAAAgggctttcctgctgggcagaagacggaggaacacgctgtccacacccctactctagagtgccttgtggtttggattctgctca | ||
| ********************************************************************************************************* | |||
| >>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000052054 ENSRNOG00000023566 LOC501126 | ||
| rat | ((((.((...(((..(((...(((((.(((.....(((.....(((((.........))))).....))).......))).))))).)))..)))...)))))). | 0.400 -31.50 |
| rat | chromosome:9:36115368:36115472:1 | Same_strand|Intronic_coding|ENSRNOT00000052054|ENSRNOG00000023566 ## ENSRNOG00000023566|protein_coding|LOC501126|LOC501126 protein. [Source:UniProtKB/TrEMBL;Acc:Q5XIN8] |
block2607965 [novel_lenNOK_shortStem_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.551 | no | no | 0.33/0.33 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 28 | 3arm | 1 | 3 | 0.35 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------AGCCCUU---------- | 1 | miR-129* |
| len | cloning frequencies | ||
| T1S1 | |||
| --------------------------------------------------------------------------------AAGCCCTTCAAAGTTTTT | 18 | 1 | |
| rat | caaaaatggatatgtttcctctcacctggattttcttagctctgtacttttcgggacacaaagtgagaagccagcaaggtAAGCCCTTCAAAGTTTTT | ||
| ************************************************************************************************** | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++ | ENSRNOT00000042562 ENSRNOG00000031232 Nrp2 | ||
| ..........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++ | ENSRNOT00000048645 ENSRNOG00000031232 Nrp2 | ||
| ..........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++ | ENSRNOT00000047847 ENSRNOG00000031232 Nrp2 | ||
| ..........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++ | ENSRNOT00000043803 ENSRNOG00000031232 Nrp2 | ||
| ..........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++ | ENSRNOT00000047568 ENSRNOG00000031232 Nrp2 | ||
| ..........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++ | ENSRNOT00000050917 ENSRNOG00000031232 Nrp2 | ||
| rat | .((((((.((...(((((((.....((((...((((((.((.(((.((....))...))).)))))))).))))..))).))))...))...)))))) | 0.970 -17.90 |
| rat | chromosome:9:61348805:61348902:1 | Same_strand|Intronic_coding|ENSRNOT00000047568|ENSRNOG00000031232 ## ENSRNOG00000031232|protein_coding|Nrp2|Neuropilin-2 precursor (Vascular endothelial cell growth factor 165 receptor 2). [Source:UniProtKB/Swiss-Prot;Acc:O35276] |
novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH (41 loci)
block1060849 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.508 | no | no | 0.46/0.57 | 19/26/0.75 | 1.0 0.0 0.5 | 1.3 0.0 0.5 | 3 1 4 | 0 0 0 | 2 1 2 | 0 0 0 | 18 28 15 | -7 -18 -2 | 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.38 0.46 0.35 | 4 8 4 | 8 | 3 | 0 | 6 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------GGUCUCU------------------------------ | 3 | novel | ||
| seed | ----------------------CACCCAG--------------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------------------UCUCUUC---------------------------- | 1 | novel | ||
| seed | -----------------------------AACAGAC-------------------------------------------- | 1 | novel | ||
| seed | -------------------GCCCACC------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T4S1 | T5S1 | |||
| ------------------------------------------TGGTCTCTTCTCTGTGGCCTT----------------- | 21 | - | - | 2 | |
| ---------------------CCACCCAGAACAGACAACCTTT------------------------------------- | 22 | - | - | 2 | |
| ----------------------------GAACAGACAACCTTTGGTCTCTTCTC-------------------------- | 26 | - | - | 1 | |
| ------------------------------------------TGGTCTCTTCTCTGTGGCCTTAG--------------- | 23 | - | - | 1 | |
| ------------------TGCCCACCCAGAACAGACAAC----------------------------------------- | 21 | - | 1 | - | |
| --------------------------------------------GTCTCTTCTCTGTGGCCTT----------------- | 19 | 1 | - | - | |
| rat | gctgcctgcccctgccccTGCCCACCCAGAACAGACAACCTTTGGTCTCTTCTCTGTGGCCTTAGttgagtcacatagta | ||||
| ******************************************************************************** | |||||
| rat | ((((..((.....((....((.(((..((((.((((........)))).))))..)))))....)).....))..)))). | 0.650 -14.70 | |||
| rat | chromosome:20:5518862:5518941:-1 | intergenic |
sblock10067 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.814 | no | no | 0.35/0.40 | 20/20/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 12 14 | 3 -1 | 5arm 3arm | 1 1 | nd nd | 0.45 0.40 | 4 4 | 2 | 2 | -4 | -4 |
| reads | miRBase family seed | |||
| seed | -------------GGAAUUG--------------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------CCAAAGC-------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S2 | |||
| -------------------------------------------------------------ACCAAAGCCATTTTTGCACT-------------- | 20 | - | 1 | |
| ------------TGGAATTGCACAAATGATGA--------------------------------------------------------------- | 20 | 1 | - | |
| rat | ggatgatactttTGGAATTGCACAAATGATGAtgggatgatttgaaaagtaataaactaatACCAAAGCCATTTTTGCACTaataaaacacaacc | |||
| *********************************************************************************************** | ||||
| rat | ((.((....(((((....((((.(((((....(((...........................)))....))))).))))....)))))..)).)) | 0.680 -9.83 | ||
| rat | chromosome:6:122355044:122355138:-1 | intergenic |
sblock10211 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.629 | no | no | 0.39/0.60 | 20/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 8 5 | -3 3 | 5arm_loop 3arm | 10 10 | nd nd | 0.40 0.52 | 4 4 | 2 | 2 | 5 | 4 |
| reads | miRBase family seed | |||
| seed | ---------GACAGUC---------------------------------------------- | 1 | novel | |
| seed | -----------------------------------CACUUAU-------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| ----------------------------------CCACTTATTACTGTACAACAGAC----- | 23 | - | 1 | |
| --------GGACAGTCTGAGGTCTGAGG---------------------------------- | 20 | 1 | - | |
| rat | ctgcaaatGGACAGTCTGAGGTCTGAGGacacggCCACTTATTACTGTACAACAGACacagt | |||
| ************************************************************** | ||||
| rat | (((....((.(((((.((((..(((......)))...))))..)))))....))....))). | 0.730 -10.50 | ||
| rat | chromosome:6:139497445:139497506:-1 | intergenic |
sblock10718 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.206 | no | no | 0.26/0.45 | 19/23/0.89 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 6 | 0 0 0 | 1 1 1 | 0 0 0 | 4 33 24 | 20 -12 -3 | 5arm 5arm_loop 3arm_loop | 4 4 4 | nd nd nd | 0.53 0.73 0.52 | 7 13 5 | 9 | 1 | 0 | 10 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------ACGAAUU--------------------------------------- | 7 | novel |
| seed | ----------------------------------AACGAGU-------------------------------------------------------------- | 1 | novel |
| seed | -----CUCUGAC------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------------------TACGAATTCCACAGGAGGAAAAG------------------------ | 23 | 6 | |
| ----TCTCTGACTTTTATGTTAA-------------------------------------------------------------------------------- | 19 | 1 | |
| ---------------------------------TAACGAGTTCACTGACATTGCC------------------------------------------------ | 22 | 1 | |
| --------------------------------------------------------TACGAATTCCACAGGAGGAAAA------------------------- | 22 | 1 | |
| rat | acattctctgacttttatgttaatagtccaccataacgagttcactgacattgcccTACGAATTCCACAGGAGGAAAAGcaagcatttttgaagagtaatgta | ||
| ******************************************************************************************************* | |||
| rat | (((((((((.......(((((.....(((.((.....((((((................))))))....)).)))......)))))......)))).))))). | 0.970 -19.61 |
| rat | chromosome:7:18806907:18807009:-1 | intergenic |
sblock11118 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.135 | no | no | 0.50/0.67 | 18/21/0.80 | 0.0 0.7 | 0.0 0.7 | 2 3 | 0 0 | 1 3 | 0 0 | 14 0 | -4 10 | 5arm_loop 3arm | 1 2 | nd nd | 0.40 0.39 | 5 4 | 5 | 4 | 10 | 0 |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------GCUCUGU------------ | 2 | novel | |||
| seed | ---------------CUGGUUG--------------------------------------------- | 2 | novel | |||
| seed | -----------------------------------------------UGCUCUG------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T4S1 | T4S2 | |||
| --------------TCTGGTTGACTGAGGAAGTC--------------------------------- | 20 | 2 | - | - | - | |
| -----------------------------------------------TGCTCTGTGCTGGGACCCTG | 20 | - | - | - | 1 | |
| -----------------------------------------------TGCTCTGTGCTGGGACCC-- | 18 | - | 1 | - | - | |
| ----------------------------------------------GTGCTCTGTGCTGGGACCCTG | 21 | - | - | 1 | - | |
| rat | cggtctgccttgccTCTGGTTGACTGAGGAAGTCtctcctcggtccGTGCTCTGTGCTGGGACCCTG | |||||
| ******************************************************************* | ||||||
| rat | .((((..((..((....(((.(((((((((......)))))))))...)))....)).))))))... | 0.480 -24.00 | ||||
| rat | chromosome:7:9073271:9073337:1 | intergenic |
sblock11652 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.290 | no | no | 0.50/0.61 | 18/23/0.83 | 0.0 0.0 0.5 | 0.0 0.0 0.8 | 1 1 4 | 0 0 0 | 1 1 2 | 0 0 0 | 14 21 26 | 12 5 -4 | 5arm 5arm 3arm_loop | 1 1 1 | nd nd nd | 0.40 0.45 0.33 | 3 3 4 | 6 | 2 | -9 | -2 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------CCCAGUU---------------------------------------- | 2 | novel | |
| seed | ----------------------------------------------------UCCCAGU----------------------------------------- | 1 | novel | |
| seed | ---------------AGGGGUU------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------------------------------------------------CCAGUUC--------------------------------------- | 1 | novel | |
| seed | ----------------------GCCAAAG----------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----------------------------------------------------TCCCAGTTCCTCCCTTGCTGAG-------------------------- | 22 | - | 2 | |
| -----------------------------------------------------CCCAGTTCCTCCCTTGCT----------------------------- | 18 | 1 | - | |
| ---------------------TGCCAAAGGTACAAGGGACA----------------------------------------------------------- | 20 | - | 1 | |
| --------------TAGGGGTTGCCAAAGGTACA------------------------------------------------------------------ | 20 | - | 1 | |
| ---------------------------------------------------TTCCCAGTTCCTCCCTTGCTGAG-------------------------- | 23 | - | 1 | |
| rat | agtaggagggtgtcTAGGGGTTGCCAAAGGTACAAGGGACAacctgcccctTTCCCAGTTCCTCCCTTGCTGAGccccacctgtggacacttgctctggc | |||
| **************************************************************************************************** | ||||
| rat | .((.((((((((((((.((((.((...((...(((((((....(((.........)))....)))))))))..))...)))).))))))))..)))).)) | 0.540 -33.00 | ||
| rat | chromosome:8:57726037:57726136:-1 | intergenic |
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