other hairpins
novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH (41 loci)
sblock9569 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.534 | no | no | 0.35/0.55 | 18/20/0.75 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 2 1 | 0 0 0 | 1 1 1 | 0 0 0 | 16 30 27 | -3 -17 -13 | 5arm_loop 5arm_loop 3arm_loop | 1 1 1 | nd nd nd | 0.45 0.90 0.72 | 4 18 12 | 4 | 3 | 0 | 2 |
| reads | miRBase family seed | ||||
| seed | -------------------------------CUCCCUU------------------------------------------------------ | 2 | novel | ||
| seed | ------------------------------------------------CAAUAAU------------------------------------- | 1 | novel | ||
| seed | -----------------UGACUCA-------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T4S2 | T5S1 | T5S2 | |||
| ------------------------------GCTCCCTTTAAAACTTAACA------------------------------------------ | 20 | 2 | - | - | |
| ----------------CTGACTCATAAGCAGCTCCC-------------------------------------------------------- | 20 | - | - | 1 | |
| -----------------------------------------------ACAATAATTCCTTAGCGC--------------------------- | 18 | - | 1 | - | |
| rat | gctttatggaagcattCTGACTCATAAGCAGCTCCCTTTAAAACTTAACAATAATTCCTTAGCGCgggtgtcaggaaaagcttgacagtggc | ||||
| ******************************************************************************************** | |||||
| rat | (((...((.((((.(((((((((....((.(((...........................))))).)).)))))))...))))..))..))) | 0.880 -17.33 | |||
| rat | chromosome:5:154003557:154003648:-1 | intergenic |
sblock9617 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.498 | no | no | 0.59/0.67 | 21/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 3 | 0 0 | 1 1 | 0 0 | 10 35 | 19 -1 | 5arm 3arm | 1 1 | nd nd | 0.48 0.41 | 6 4 | 4 | 2 | -20 | -19 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------GCGACCA------------------------------------------------- | 3 | novel | |
| seed | -----------ACCCGGA------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----------------------------------------------------CGCGACCAAACGTGGGTGACAA----------------------------------- | 22 | - | 3 | |
| ----------GACCCGGATGGCTCACTCCTG------------------------------------------------------------------------------ | 21 | 1 | - | |
| rat | gccctccattGACCCGGATGGCTCACTCCTGtgaaccaagggtatggcgcagCGCGACCAAACGTGGGTGACAAggagaatggagagggagaggggccagtgttgtggg | |||
| ************************************************************************************************************* | ||||
| rat | .(((..(((((.(((......(((.(((((....(((....((.((((((...))).))).))...)))....)))))....))).......)))..)))))....))) | 0.790 -35.82 | ||
| rat | chromosome:5:165238439:165238547:-1 | intergenic ## {SimpF: oe = 0.73 -1 CpG} |
sblock966 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.287 | no | no | 0.60/0.65 | 20/23/1.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 20 8 | -4 8 | 5arm_loop 3arm | 1 1 | 19 13 | 0.50 0.35 | 5 5 | 3 | 1 | 7 | 0 |
| reads | miRBase family seed | ||
| seed | ---------------------GGGAAGA---------------------------------------------------- | 2 | novel |
| seed | --------------------------------------------------GGCUUCC----------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| --------------------GGGGAAGATGGGGTCTCATG---------------------------------------- | 20 | 2 | |
| -------------------------------------------------GGGCTTCCAGAGTGGTCTCCCTC-------- | 23 | 1 | |
| rat | ggttcggtgacggcaggctgGGGGAAGATGGGGTCTCATGcaggtctctGGGCTTCCAGAGTGGTCTCCCTCactttgcc | ||
| ******************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000036745 ENSRNOG00000026527 RGD1560591_predicted | ||
| rat | (((..(((((.((.(((((...(((((..(((..((.....))..)))....))))).....))))))).)))))..))) | 0.880 -30.60 |
| rat | chromosome:1:208141602:208141681:-1 | Same_strand|Intronic_coding|ENSRNOT00000036745|ENSRNOG00000026527 ## Same_strand|Boundary_coding|ENSRNOT00000036745|ENSRNOG00000026527 ## ENSRNOG00000026527|protein_coding|RGD1560591_predicted| |
sblock994 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.282 | no | no | 0.47/0.70 | 19/20/0.75 | 0.0 0.0 | 0.0 0.0 | 3 1 | 0 0 | 1 1 | 0 0 | 13 12 | -4 6 | 5arm_loop 3arm | 1 1 | nd nd | 0.45 0.53 | 5 8 | 4 | 2 | 9 | 10 |
| reads | miRBase family seed | |||
| seed | --------------GCAUCCC-------------------------------------------------------- | 3 | miR-324 | |
| seed | -----------------------------------------------AUGAUGU----------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T3S1 | |||
| -------------GGCATCCCAGGGCTGTCCCT-------------------------------------------- | 20 | - | 3 | |
| ----------------------------------------------CATGATGTCACCACAGACA------------ | 19 | 1 | - | |
| rat | ccctccttgctttGGCATCCCAGGGCTGTCCCTttaaactacagacCATGATGTCACCACAGACAgtaagtgacagg | |||
| ***************************************************************************** | ||||
| rat | ((.((((((((.(((((((....((((((...........)))).))..)))))))........)))))).))..)) | 0.440 -16.50 | ||
| rat | chromosome:1:209011265:209011341:-1 | intergenic |
sblock5094 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.088 | no | no | 0.44/0.55 | 20/25/0.75 | 0.0 0.0 0.0 | 2.5 0.0 0.0 | 2 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 26 39 0 | -4 -4 31 | 5arm_loop 3arm_loop 3arm | 1 6 6 | nd nd nd | 0.35 0.35 0.43 | 5 3 3 | 4 | 1 | 0 | -2 |
| reads | miRBase family seed | ||
| seed | ---------------------------GUCAGUG------------------------------------------------------------------------- | 2 | novel |
| seed | ------------------------------------------------------------------------------------GAUUGGU---------------- | 1 | novel |
| seed | -------------------------------------------------CCAAAGG--------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------TGTCAGTGGTAGGATGTACT------------------------------------------------------------- | 20 | 1 | |
| -----------------------------------------------------------------------------------TGATTGGTGTAGAGCTTGGGATGA | 24 | 1 | |
| ------------------------------------------------TCCAAAGGCCTGCCTCTTGA--------------------------------------- | 20 | 1 | |
| --------------------------TGTCAGTGGTAGGATGTACTTTTCC-------------------------------------------------------- | 25 | 1 | |
| rat | cattaatagtgatacaggtataccttTGTCAGTGGTAGGATGTACTTTTCCAAAGGCCTGCCTCTTGAaataaggaggtgtttTGATTGGTGTAGAGCTTGGGATGA | ||
| *********************************************************************************************************** | |||
| rat | ((((...(((.((((..((((((((((.((((.((((((.....(((.....))).)))))).)).)).....))))))))....))..))))...)))...)))). | 0.620 -27.90 |
| rat | chromosome:17:20524587:20524693:-1 | intergenic |
novel_shortStem_loopOverlap_bulgeHIGH (41 loci)
block143901 [novel_shortStem_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.194 | no | no | 0.40/0.40 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -3 | 5arm_loop | 1 | nd | 0.30 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----AAAGUGU-------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----TAAAGTGTGTGTTGAGGTTG-------------------------------- | 20 | 1 | |
| rat | ttgcTAAAGTGTGTGTTGAGGTTGgctatgtctcaatagatctaatacttgaagta | ||
| ******************************************************** | |||
| rat | .((((.((((((.((((((((.........))))))))......))))))..)))) | 1.000 -10.80 |
| rat | chromosome:11:6088104:6088159:1 | intergenic |
block154661 [novel_shortStem_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.076 | no | no | 0.30/0.30 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -2 | 3arm_loop | 1 | nd | 0.30 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------UGAAGAA---------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| -------------------------------ATGAAGAACTGAACAAAATG---- | 20 | 1 | |
| rat | ttactgtatgtccatgttcttcttgttgcaaATGAAGAACTGAACAAAATGtgga | ||
| ******************************************************* | |||
| rat | ((((....(((.((.(((((((...........))))))))).)))....)))). | 0.990 -11.60 |
| rat | chromosome:11:35461094:35461148:1 | intergenic |
block156882 [novel_shortStem_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.033 | no | no | 0.41/0.41 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | -3 | 5arm_loop | 2 | nd | 0.27 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----UUUCUCA------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ---CTTTCTCAGTATATCTCAGTGC---------------------------- | 22 | 1 | |
| rat | gttCTTTCTCAGTATATCTCAGTGCcctagatctgaatgtatttagaaaatac | ||
| ***************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000047310 ENSRNOG00000029184 Epha6_predicted | ||
| rat | ....(((((.(((((((.((((..........))))))))))).))))).... | 1.000 -10.50 |
| rat | chromosome:11:40721932:40721984:1 | Same_strand|Intronic_coding|ENSRNOT00000047310|ENSRNOG00000029184 ## ENSRNOG00000029184|protein_coding|Epha6_predicted|Ephrin type-A receptor 6 precursor (EC 2.7.10.1) (Tyrosine-protein kinase receptor EHK-2) (EPH homology kinase 2). [Source:UniProtKB/Swiss-Prot;Acc:P54758] |
block232606 [novel_shortStem_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.244 | no | no | 0.50/0.50 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | -1 | 3arm | 1 | nd | 0.30 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------GAAACUC--------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| -------------------------TGAAACTCGGGGGTTTTCTG--- | 20 | 1 | |
| rat | gtttagcaataacctttgtctcactTGAAACTCGGGGGTTTTCTGgat | ||
| ************************************************ | |||
| rat | ((((((....((((((((..((....))....))))))))..)))))) | 1.000 -9.30 |
| rat | chromosome:12:42032925:42032972:1 | intergenic |
block266416 [novel_shortStem_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.306 | no | no | 0.50/0.50 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | -2 | 5arm_loop | 2 | nd | 0.29 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---CUGUGUC----------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --GCTGTGTCTTTGACATGGGAACAG------------------------------------- | 24 | 1 | |
| rat | ccGCTGTGTCTTTGACATGGGAACAGaagttggtttcaacatgtatctgcttgatattggtgg | ||
| *************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000003605 ENSRNOG00000002680 Lamc1_predicted | ||
| rat | ((((((((((....((((((((((........)))))..)))))........))))).))))) | 0.820 -14.20 |
| rat | chromosome:13:68329302:68329364:-1 | Same_strand|Intronic_coding|ENSRNOT00000003605|ENSRNOG00000002680 ## ENSRNOG00000002680|protein_coding|Lamc1_predicted|Laminin gamma1 (Fragment). [Source:UniProtKB/TrEMBL;Acc:P97552] |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 30579 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.