other hairpins
novel_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (40 loci)
block847609 [novel_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.48/0.48 | 21/21/1.00 | 0.0 | 0.0 | 5 | 0 | 1 | 0 | 14 | -2 | 5arm_loop | 14 | nd | 0.38 | 4 | 5 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------AGAACUG---------------------------------------------- | 5 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------AAGAACTGCACGGTATGAGAG--------------------------------- | 21 | 5 | |
| rat | acctccaaagttggAAGAACTGCACGGTATGAGAGcctcaactgttgcaggacctcctatgttgtagg | ||
| ******************************************************************** | |||
| ------------------------------------------------------------------------------ | ENSRNOT00000041486 ENSRNOG00000033456 LOC308198 | ||
| rat | .(((.(((....(((....(((((((((.((((...))))))))).))))....)))....))).))) | 1.000 -22.20 |
| rat | chromosome:1:52393134:52393201:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000044415|ENSRNOG00000033456 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041486|ENSRNOG00000033456 ## ENSRNOG00000033456|protein_coding|LOC308198| |
block1475587 [novel_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.55/0.55 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 34 | -3 | 5arm_loop | 21 | nd | 0.36 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------CACCCAG-------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ----------------------------------ACACCCAGTGCTGTGTCCTATG------------------------------------------------------------ | 22 | 1 | |
| rat | aggacacccagtgctgtgtcctgtggtagacaagACACCCAGTGCTGTGTCCTATGgtagacaggacatccagtgctgtgtcctgtggtaggcaggacacccagtgctgtgtccta | ||
| ******************************************************************************************************************** | |||
| rat | (((((((..((..(((((((((((.....(((.(((((..((..(((((((((.........))))))..)))..))))))).))).....)))))))))..))..))))))))). | 0.440 -54.70 |
| rat | chromosome:3:89187865:89187980:1 | intergenic ## {Repeats: trf 964 986 0 class=trf} |
block1641537 [novel_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.57/0.57 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 34 | -1 | 5arm_loop | 110 | nd | 0.43 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------UUCAGUC------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ----------------------------------CTTCAGTCAGGCTCACTGGCT----------------------------------------------------------------- | 21 | 1 | |
| rat | gctcttcagcctggctcactggctagcctgtgctCTTCAGTCAGGCTCACTGGCTagcctctgctcttcagcctggctcactggctagcctgtgctcttcagcctggctcactgactagc | ||
| ************************************************************************************************************************ | |||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000051405 ENSRNOG00000032252 LOC681850 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000044814 ENSRNOG00000039248 | ||
| rat | (((..((((((.(((((((.((((((((.(((......(((((((((....(((........)))....)))))))))))).)))))))).)))......)))).))))....))..))) | 0.970 -53.00 |
| rat | chromosome:4:57785006:57785125:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000047545|ENSRNOG00000032252 ## Opposite_strand|Intronic_coding|ENSRNOT00000044814|ENSRNOG00000039248 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000051405|ENSRNOG00000032252 ## ENSRNOG00000039248|protein_coding|| ## ENSRNOG00000032252|protein_coding|LOC681850|LOC501224 protein. [Source:UniProtKB/TrEMBL;Acc:Q0P5Q7] ## {Repeats: trf 215 236 0 class=trf} |
block1641646 [novel_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.57/0.57 | 21/21/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 34 | -1 | 5arm_loop | 110 | nd | 0.43 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------------------------------------UUCAGUC------------- | 1 | novel |
| seed | -----------------------------------UUCAGUC--------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ----------------------------------CTTCAGTCAGGCTCACTGGCT-------------------------------------------------------------- | 21 | 1 | |
| ------------------------------------------------------------------------------------------------CTTCAGTCAGGCTCACTGGCT | 21 | 1 | |
| rat | gctcttcagcctggctcactggctagcctctgctCTTCAGTCAGGCTCACTGGCTagcttatgctcttcagcctggctcactggctagcctctgctCTTCAGTCAGGCTCACTGGCT | ||
| ********************************************************************************************************************* | |||
| ------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000051405 ENSRNOG00000032252 LOC681850 | ||
| rat | (((....(((((((((((..((((((((..((......(((((((((....(((........)))....)))))))))))..))))))))..))......)))))))))....))). | 0.990 -50.90 |
| rat | chromosome:4:57849307:57849423:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000047545|ENSRNOG00000032252 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000051405|ENSRNOG00000032252 ## ENSRNOG00000032252|protein_coding|LOC681850|LOC501224 protein. [Source:UniProtKB/TrEMBL;Acc:Q0P5Q7] ## {Repeats: trf 186 207 0 class=trf} |
block1641647 [novel_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.57/0.57 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 34 | -1 | 5arm_loop | 110 | nd | 0.43 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------UUCAGUC-------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ----------------------------------CTTCAGTCAGGCTCACTGGCT------------------------------------------------------------- | 21 | 1 | |
| rat | gctcttcagcctggctcactggctagcctctgctCTTCAGTCAGGCTCACTGGCTagcttatgctcttcagcctggctcactggctagcctctgctcttcagtcaggctcactggc | ||
| ******************************************************************************************************************** | |||
| ------------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000051405 ENSRNOG00000032252 LOC681850 | ||
| rat | (((....(((((((((((..((((((((..((......(((((((((....(((........)))....)))))))))))..))))))))..))......)))))))))....))) | 0.990 -49.70 |
| rat | chromosome:4:57849307:57849422:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000047545|ENSRNOG00000032252 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000051405|ENSRNOG00000032252 ## ENSRNOG00000032252|protein_coding|LOC681850|LOC501224 protein. [Source:UniProtKB/TrEMBL;Acc:Q0P5Q7] ## {Repeats: trf 124 145 0 class=trf} |
block1032306 [novel_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.50/0.50 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 18 | -3 | 3arm_loop | 12 | nd | 0.45 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------UUGGUGG-------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| --------------------------------------CTTGGTGGCCAAAGCTGTTTCA------------------ | 22 | 1 | |
| rat | cagatggcagtcctttgtcatcctagcttgatacctgtCTTGGTGGCCAAAGCTGTTTCAtgactagggcacatttgg | ||
| ****************************************************************************** | |||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000034477 ENSRNOG00000025061 RGD1308106_predicted | ||
| rat | ((((((...(((((..(((((..((((((..((((......))))....))))))....))))).))))).)))))). | 1.000 -28.10 |
| rat | chromosome:1:210044570:210044647:1 | Opposite_strand|Intronic_coding|ENSRNOT00000034477|ENSRNOG00000025061 ## ENSRNOG00000025061|protein_coding|RGD1308106_predicted| |
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH (40 loci)
block50229 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.251 | no | no | 0.44/0.68 | 18/25/0.33 | 0.5 0.7 0.6 1.3 | 1.8 4.0 1.0 3.7 | 4 3 5 3 | 0 0 0 0 | 3 2 3 2 | 0 0 0 0 | 8 16 26 16 | 4 -7 -16 -22 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm_loop | 1 1 2 2 | nd nd nd nd | 0.32 0.39 0.45 0.40 | 3 3 5 5 | 15 | 5 | 0 | 1 |
| reads | miRBase family seed | ||||||
| seed | ---------CGGCAGA----------------------------------------------------- | 3 | novel | ||||
| seed | ---------------------------CCUGGCU----------------------------------- | 3 | novel | ||||
| seed | --------------------------------CUGUUUG------------------------------ | 2 | novel | ||||
| seed | -----------------GCUCGUG--------------------------------------------- | 2 | novel | ||||
| seed | ----------------------------CUGGCUG---------------------------------- | 2 | novel | ||||
| seed | ------------------------------------UUGAGCU-------------------------- | 1 | novel | ||||
| seed | -----------GCAGAAG--------------------------------------------------- | 1 | novel | ||||
| seed | -------------------UCGUGGA------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T2S2 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| ---------------------------CCTGGCTGTTTGAGCTTGT----------------------- | 19 | - | 2 | - | - | - | |
| --------------------------GCCTGGCTGTTTGAGCTTGT----------------------- | 20 | - | - | 1 | - | - | |
| ----------------AGCTCGTGGAGCCTGGCTGTTTG------------------------------ | 23 | - | - | 1 | - | - | |
| --------------------------GCCTGGCTGTTTGAGCTTG------------------------ | 19 | 1 | - | - | - | - | |
| ------------------CTCGTGGAGCCTGGCTGTTTGAG---------------------------- | 23 | - | - | - | - | 1 | |
| -------------------------------GCTGTTTGAGCTTGTGGAGTCATCT------------- | 25 | - | - | 1 | - | - | |
| -------------------------------GCTGTTTGAGCTTGTGGA-------------------- | 18 | - | - | 1 | - | - | |
| --------------------------GCCTGGCTGTTTGAGCTTGTGGAG------------------- | 24 | 1 | - | - | - | - | |
| --------GCGGCAGAAGCTCGTGGAG------------------------------------------ | 19 | - | - | 1 | - | - | |
| ----------GGCAGAAGCTCGTGGAGC----------------------------------------- | 18 | - | - | 1 | - | - | |
| ----------------AGCTCGTGGAGCCTGGCT----------------------------------- | 18 | - | - | 1 | - | - | |
| -----------------------------------TTTGAGCTTGTGGAGTCA---------------- | 18 | - | 1 | - | - | - | |
| --------GCGGCAGAAGCTCGTGGAGCCT--------------------------------------- | 22 | - | - | - | 1 | - | |
| --------GCGGCAGAAGCTCGTGGA------------------------------------------- | 18 | - | 1 | - | - | - | |
| rat | gacccgcgGCGGCAGAAGCTCGTGGAGCCTGGCTGTTTGAGCTTGTGGAGTCATCTtcgccggttggtc | ||||||
| ********************************************************************* | |||||||
| ..........................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000004862 ENSRNOG00000003661 Hn1 | ||||||
| rat | ((((.((..((((.((((...((((..((.((((.....))))...))..)))))))))))))).)))) | 0.450 -25.40 | |||||
| rat | chromosome:10:105598024:105598092:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000004862|ENSRNOG00000003661 ## ENSRNOG00000003661|protein_coding|Hn1|Hematological and neurological expressed 1 protein. [Source:UniProtKB/Swiss-Prot;Acc:Q6AXU6] |
block881751 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.452 | no | no | 0.37/0.58 | 19/26/0.40 | 4.0 0.0 0.0 0.3 0.0 | 3.2 0.0 0.0 3.6 0.0 | 4 2 1 7 1 | 0 0 0 0 0 | 1 1 1 2 1 | 0 0 0 0 0 | 17 31 19 7 5 | -8 -16 -2 7 16 | 5arm_loop_3arm 5arm_loop_3arm 3arm_loop 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.40 0.48 0.39 0.50 0.63 | 4 6 3 9 9 | 15 | 2 | 9 | 0 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------UGCAUCU------------------------- | 5 | novel | |
| seed | --------------------------------UGCUGCC------------------------------------------- | 2 | novel | |
| seed | ---------------------------------------------------GCAUCUU------------------------ | 2 | novel | |
| seed | -----------------------------------------------------------GAAAACC---------------- | 1 | novel | |
| seed | --------------------------AUCAAAU------------------------------------------------- | 1 | novel | |
| seed | -----------------------GCAAUCA---------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------AAGCCCA---------------------------------- | 1 | novel | |
| seed | ---------------------UUGCAAU------------------------------------------------------ | 1 | novel | |
| seed | ------------------CAGUUGC--------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| -------------------------------------------------ATGCATCTTTGAAAACCCTTCCCTCC------- | 26 | 1 | 2 | |
| -------------------------------------------------ATGCATCTTTGAAAACCCT-------------- | 19 | - | 2 | |
| -------------------------------ATGCTGCCTTAAGCCCAGATG------------------------------ | 21 | - | 2 | |
| --------------------------------------------------TGCATCTTTGAAAACCCTTC------------ | 20 | - | 2 | |
| -------------------------AATCAAATGCTGCCTTAAG-------------------------------------- | 19 | - | 1 | |
| --------------------GTTGCAATCAAATGCTGCC------------------------------------------- | 19 | - | 1 | |
| ----------------------TGCAATCAAATGCTGCCTT----------------------------------------- | 19 | - | 1 | |
| -----------------TCAGTTGCAATCAAATGCTG--------------------------------------------- | 20 | - | 1 | |
| ----------------------------------------TAAGCCCAGATGCATCTTTGAAA------------------- | 23 | - | 1 | |
| ----------------------------------------------------------TGAAAACCCTTCCCTCCCC----- | 19 | 1 | - | |
| rat | gctggagagccccagatTCAGTTGCAATCAAATGCTGCCTTAAGCCCAGATGCATCTTTGAAAACCCTTCCCTCCCCcttgc | |||
| ********************************************************************************** | ||||
| -------------------------------------------------------------------------------------------- | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | |||
| rat | ...((((.........(((((.(((.(((....(((......)))...))))))...))))).........))))....... | 0.530 -14.17 | ||
| rat | chromosome:1:129029185:129029266:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
block1067072 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.419 | no | no | 0.40/0.63 | 19/26/0.55 | 3.2 3.3 | 3.5 2.9 | 4 14 | 0 0 | 1 3 | 0 0 | 17 30 | -8 -17 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.38 0.53 | 3 4 | 29 | 3 | 0 | 0 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------AGCAAGA---------------------------------------------------- | 6 | novel | ||
| seed | ----------------------------------ACAGCAA------------------------------------------------------ | 5 | novel | ||
| seed | -------------------------------GGUACAG--------------------------------------------------------- | 4 | novel | ||
| seed | -----------------------------------------------AGCAGAA----------------------------------------- | 2 | novel | ||
| seed | -------------------------------------GCAAGAG--------------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------GAGUUCA----------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------------AAGAGUU------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------CAGCAAG----------------------------------------------------- | 1 | novel | ||
| seed | ------------------------GGGGCCA---------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------UGGGGCC----------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------AGAGUUC------------------------------------------------ | 1 | novel | ||
| seed | ------------------------------------------AGUUCAG---------------------------------------------- | 1 | novel | ||
| seed | ------------------GUCAGUG---------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------CAGUGGG-------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T5S1 | |||
| -----------------------------------CAGCAAGAGTTCAGCAGAAGT--------------------------------------- | 21 | - | - | 4 | |
| ---------------------------------TACAGCAAGAGTTCAGCAGAAGT--------------------------------------- | 23 | - | - | 4 | |
| ------------------------------AGGTACAGCAAGAGTTCAG---------------------------------------------- | 19 | - | - | 2 | |
| ----------------------------------------------CAGCAGAAGTAAGAGGTTC------------------------------ | 19 | - | 2 | - | |
| ------------------------------AGGTACAGCAAGAGTTCAGCAG------------------------------------------- | 22 | - | - | 2 | |
| ----------------------GTGGGGCCAGGTACAGCAAGAGTTC------------------------------------------------ | 25 | - | - | 1 | |
| ----------------------------------------AGAGTTCAGCAGAAGTAAG------------------------------------ | 19 | - | - | 1 | |
| ----------------------------------------AGAGTTCAGCAGAAGTAAGAGGTT------------------------------- | 24 | - | - | 1 | |
| -----------------------------------------GAGTTCAGCAGAAGTAAGAGGTT------------------------------- | 23 | - | - | 1 | |
| -----------------------------------CAGCAAGAGTTCAGCAGAA----------------------------------------- | 19 | - | - | 1 | |
| -----------------AGTCAGTGGGGCCAGGTACAG--------------------------------------------------------- | 21 | - | - | 1 | |
| -------------------TCAGTGGGGCCAGGTACAG--------------------------------------------------------- | 19 | - | - | 1 | |
| -----------------------TGGGGCCAGGTACAGCAAGA---------------------------------------------------- | 20 | - | - | 1 | |
| ----------------------------------ACAGCAAGAGTTCAGCAGAA----------------------------------------- | 20 | 1 | - | - | |
| ---------------------------------------AAGAGTTCAGCAGAAGTAAGAGGTTC------------------------------ | 26 | - | - | 1 | |
| --------------------------------------CAAGAGTTCAGCAGAAGTAAGAGGT-------------------------------- | 25 | - | - | 1 | |
| ------------------------------------AGCAAGAGTTCAGCAGAAG---------------------------------------- | 19 | - | - | 1 | |
| ---------------------------------TACAGCAAGAGTTCAGCAGAAGTAA------------------------------------- | 25 | - | - | 1 | |
| -----------------------------------CAGCAAGAGTTCAGCAGAAGTAAGAG---------------------------------- | 26 | 1 | - | - | |
| ------------------------------------AGCAAGAGTTCAGCAGAAGT--------------------------------------- | 20 | - | - | 1 | |
| rat | gcctgagcataggggtgagtcagtggggccAGGTACAGCAAGAGTTCAGCAGAAGTAAGAGGTTCtgagttgggactcagggacttgggtaaggc | ||||
| *********************************************************************************************** | |||||
| rat | ((((..((.((((..((((((..(((..((...(((.((.........))....)))...))..)))......))))))....)))).)).)))) | 0.550 -23.90 | |||
| rat | chromosome:20:13194924:13195018:-1 | intergenic |
block1171846 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.553 | no | no | 0.50/0.74 | 18/22/0.42 | 1.3 0.5 0.0 0.5 | 0.3 0.5 2.4 0.0 | 3 2 5 2 | 0 0 0 0 | 2 1 3 2 | 0 0 0 0 | 43 50 42 37 | -14 -18 -9 -2 | 5arm_loop_3arm 3arm_loop 3arm_loop 3arm | 1 1 1 1 | 29 23 18 10 | 0.71 0.79 0.55 0.32 | 14 13 8 2 | 12 | 4 | 0 | 2 |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------CACAAGA-------------------------------------------------------- | 5 | novel | |||
| seed | ----------------------------------------------AACGCAG------------------------------------------------------------------- | 2 | novel | |||
| seed | --------------------------------------------GGAACGC--------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------------------AGCGGAU------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------------------AGGCGAC-------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------GCGGAUC------------------------------------------------ | 1 | novel | |||
| seed | ----------------------------------------------------GGCGACA------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T3S1 | T3S2 | T4S1 | |||
| --------------------------------------------------------ACACAAGAAGCGGATCCA---------------------------------------------- | 18 | 1 | 1 | 1 | - | |
| --------------------------------------------------------ACACAAGAAGCGGATCCAGGTC------------------------------------------ | 22 | - | - | 2 | - | |
| ----------------------------------------------------------------AGCGGATCCAGGTCGGGGG------------------------------------- | 19 | - | - | - | 1 | |
| --------------------------------------------------CAGGCGACACAAGAAGCGG--------------------------------------------------- | 19 | - | - | 1 | - | |
| ---------------------------------------------------------------AAGCGGATCCAGGTCGGGGG------------------------------------- | 20 | - | - | 1 | - | |
| ---------------------------------------------------AGGCGACACAAGAAGCGGA-------------------------------------------------- | 19 | - | - | 1 | - | |
| -------------------------------------------CGGAACGCAGGCGACACAAGA-------------------------------------------------------- | 21 | - | - | 1 | - | |
| ---------------------------------------------GAACGCAGGCGACACAAGAA------------------------------------------------------- | 20 | - | 1 | - | - | |
| ---------------------------------------------GAACGCAGGCGACACAAGA-------------------------------------------------------- | 19 | - | 1 | - | - | |
| rat | ctcgctccacgtcagaaggaaccgggcggagcggccaacatggCGGAACGCAGGCGACACAAGAAGCGGATCCAGGTCGGGGGccgcggggggctcgggcgcgctgggacaaggagggac | |||||
| ************************************************************************************************************************ | ||||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000012240 ENSRNOG00000009057 Tloc1 | |||||
| rat | .((.((((..(((....((..((((((...((((((....(((((((.(((..............)))..)))..))))..)))))).....)))))).....))..)))..)))).)). | 0.950 -45.84 | ||||
| rat | chromosome:2:117015613:117015732:-1 | Same_strand|Boundary_coding|ENSRNOT00000012240|ENSRNOG00000009057 ## ENSRNOG00000009057|protein_coding|Tloc1|translocation protein 1 [Source:RefSeq_peptide;Acc:NP_001029301] |
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