other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH (40 loci)
sblock7416 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.256 | no | no | 0.47/0.61 | 18/20/0.14 | 4.7 0.0 1.7 | 4.6 0.0 1.3 | 10 1 3 | 0 0 0 | 5 1 2 | 0 0 0 | 8 16 5 | -10 -7 1 | 5arm_loop 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.32 0.50 0.32 | 3 6 3 | 14 | 5 | 0 | 0 |
| reads | miRBase family seed | ||||||
| seed | ----------------AAGCUGA------------------------------------------- | 2 | novel | ||||
| seed | -----------------AGCUGAC------------------------------------------ | 2 | novel | ||||
| seed | --------------------------------------------GGUCACA--------------- | 1 | novel | ||||
| seed | ----------GGCUGCA------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------UCUGGUC------------------ | 1 | novel | ||||
| seed | --------------GCAAGCU--------------------------------------------- | 1 | novel | ||||
| seed | ---------UGGCUGC-------------------------------------------------- | 1 | novel | ||||
| seed | ------------CUGCAAG----------------------------------------------- | 1 | novel | ||||
| seed | ---------------------------------UCUCUAG-------------------------- | 1 | novel | ||||
| seed | ---------------CAAGCUG-------------------------------------------- | 1 | novel | ||||
| seed | -----------GCUGCAA------------------------------------------------ | 1 | novel | ||||
| seed | -------------------------------------------UGGUCAC---------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | |||
| ----------------AAGCTGACCACAAAACGTC------------------------------- | 19 | 1 | - | - | 1 | - | |
| ---------------CAAGCTGACCACAAAACG--------------------------------- | 18 | - | - | 1 | 1 | - | |
| ----------------------------------------GTCTGGTCACAGCTAGGTC------- | 19 | - | - | 1 | - | - | |
| ---------TGGCTGCAAGCTGACCAC--------------------------------------- | 18 | - | - | - | 1 | - | |
| --------------GCAAGCTGACCACAAAACG--------------------------------- | 19 | - | - | - | - | 1 | |
| ------------------------------------------CTGGTCACAGCTAGGTCCT----- | 19 | - | - | - | 1 | - | |
| -------------------------------------------TGGTCACAGCTAGGTCCT----- | 18 | - | - | - | 1 | - | |
| -----------GCTGCAAGCTGACCACAAA------------------------------------ | 19 | - | - | 1 | - | - | |
| -------------TGCAAGCTGACCACAAAACG--------------------------------- | 20 | - | - | - | 1 | - | |
| --------------------------------GTCTCTAGGTCTGGTCAC---------------- | 18 | - | - | 1 | - | - | |
| --------ATGGCTGCAAGCTGACCAC--------------------------------------- | 19 | - | 1 | - | - | - | |
| ----------GGCTGCAAGCTGACCACAAA------------------------------------ | 20 | 1 | - | - | - | - | |
| rat | gagtaggtATGGCTGCAAGCTGACCACAAAACGTCTCTAGGTCTGGTCACAGCTAGGTCCTttttc | ||||||
| ****************************************************************** | |||||||
| rat | (((.(((..((((((...(((((((..............)))).)))..))))))...)))..))) | 0.980 -16.94 | |||||
| rat | chromosome:20:44425307:44425372:1 | intergenic |
sblock7993 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.082 | no | no | 0.38/0.57 | 19/25/0.50 | 0.4 0.0 3.1 0.0 | 1.2 0.0 4.8 0.0 | 5 2 14 1 | 0 0 0 0 | 1 1 3 1 | 0 0 0 0 | 3 27 8 2 | 9 -9 -23 14 | 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.39 0.53 0.38 0.38 | 4 4 3 3 | 22 | 3 | -12 | -14 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------GGGAGCA----------------------------------- | 8 | novel | ||
| seed | ------GCUGGAU----------------------------------------------------------------- | 4 | novel | ||
| seed | -----------------------------------------CAAAGGC------------------------------ | 3 | novel | ||
| seed | ----------------------------GAAAGCA------------------------------------------- | 2 | novel | ||
| seed | ------------------------------------------AAAGGCU----------------------------- | 1 | novel | ||
| seed | --------------------------------------------AGGCUUG--------------------------- | 1 | novel | ||
| seed | --------------------------------------------------------ACAAUGG--------------- | 1 | novel | ||
| seed | --------------------------------------------------GGUUUCA--------------------- | 1 | novel | ||
| seed | ----AUGCUGG------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -----------------------------------TGGGAGCAAAGGCTTGGTT------------------------ | 19 | 1 | 1 | 2 | |
| -----TGCTGGATGTGACATGGGAG----------------------------------------------------- | 20 | - | - | 3 | |
| -----------------------------------TGGGAGCAAAGGCTTGGTTTCAC-------------------- | 23 | - | - | 2 | |
| ---------------------------AGAAAGCATGGGAGCAAAG-------------------------------- | 19 | - | - | 2 | |
| ----------------------------------------GCAAAGGCTTGGTTTCACA------------------- | 19 | - | - | 2 | |
| -----------------------------------------CAAAGGCTTGGTTTCACAA------------------ | 19 | - | - | 1 | |
| -----TGCTGGATGTGACATGGGAGGGA-------------------------------------------------- | 23 | - | - | 1 | |
| -----------------------------------TGGGAGCAAAGGCTTGGTTTCACAA------------------ | 25 | - | - | 1 | |
| -----------------------------------TGGGAGCAAAGGCTTGGTTTC---------------------- | 21 | - | 1 | - | |
| -------------------------------------------------TGGTTTCACAATGGGATATCT-------- | 21 | - | - | 1 | |
| ----------------------------------------GCAAAGGCTTGGTTTCACAATG---------------- | 22 | - | - | 1 | |
| -------------------------------------------AAGGCTTGGTTTCACAATGGGA------------- | 22 | - | - | 1 | |
| ---TATGCTGGATGTGACATGG-------------------------------------------------------- | 19 | - | - | 1 | |
| -------------------------------------------------------CACAATGGGATATCTTCCAAA-- | 21 | - | - | 1 | |
| rat | gacTATGCTGGATGTGACATGGGAGGGAGAAAGCATGGGAGCAAAGGCTTGGTTTCACAATGGGATATCTTCCAAAgt | ||||
| ****************************************************************************** | |||||
| rat | .(((.((..((((((..(((....((((..((((.((....))...))))..))))...)))..))))))..)).))) | 0.990 -18.80 | |||
| rat | chromosome:3:76948027:76948104:1 | intergenic |
sblock8141 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.322 | no | no | 0.37/0.47 | 18/21/0.35 | 1.6 0.7 | 2.4 1.0 | 11 6 | 0 0 | 3 2 | 0 0 | 0 14 | 0 -19 | 5arm 3arm_loop | 2 2 | nd nd | 0.33 0.42 | 3 4 | 17 | 3 | 0 | 6 |
| reads | miRBase family seed | ||||
| seed | ---AACCUUU--------------------------------------------------- | 7 | novel | ||
| seed | ---------------------------AUCCAGG--------------------------- | 4 | novel | ||
| seed | -----------------------------CCAGGAA------------------------- | 2 | novel | ||
| seed | ---------UCUUUUG--------------------------------------------- | 2 | novel | ||
| seed | -CUAACCU----------------------------------------------------- | 1 | novel | ||
| seed | -------UUUCUUU----------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| --TAACCTTTCTTTTGCAGC----------------------------------------- | 18 | - | - | 3 | |
| --TAACCTTTCTTTTGCAGCTG--------------------------------------- | 20 | 1 | 2 | - | |
| ----------------------------TCCAGGAACGTTGTGCAAT-------------- | 19 | - | 1 | 1 | |
| --------------------------TATCCAGGAACGTTGTGCAA--------------- | 20 | - | - | 2 | |
| --------TTCTTTTGCAGCTGCTCCT---------------------------------- | 19 | - | - | 2 | |
| --------------------------TATCCAGGAACGTTGTGCA---------------- | 19 | - | - | 2 | |
| TCTAACCTTTCTTTTGCAGCT---------------------------------------- | 21 | - | - | 1 | |
| --TAACCTTTCTTTTGCAGCT---------------------------------------- | 19 | - | - | 1 | |
| ------CTTTCTTTTGCAGCTGCT------------------------------------- | 18 | - | - | 1 | |
| rat | TCTAACCTTTCTTTTGCAGCTGCTCCTATCCAGGAACGTTGTGCAATtattggagtctgga | ||||
| ************************************************************* | |||||
| rat | ((((..((((...(((((..((.((((....)))).))...))))).....))))..)))) | 1.000 -11.80 | |||
| rat | chromosome:3:115213270:115213330:1 | intergenic |
sblock8417 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.604 | no | no | 0.56/0.68 | 18/23/0.31 | 0.0 0.0 2.6 | 0.0 0.0 2.2 | 1 1 24 | 0 0 0 | 1 1 7 | 0 0 0 | 19 30 11 | -3 -14 -6 | 5arm_loop 5arm_loop_3arm 3arm | 1 1 2 | nd nd nd | 0.47 0.53 0.35 | 4 6 3 | 26 | 7 | 1 | 4 |
| reads | miRBase family seed | ||||||||
| seed | ----------------------------------------AGCUAGU------------------------------ | 11 | novel | ||||||
| seed | ------------------------------------------CUAGUGG---------------------------- | 4 | novel | ||||||
| seed | -------------------------------------GCGAGCU--------------------------------- | 3 | novel | ||||||
| seed | ------------------------------------UGCGAGC---------------------------------- | 2 | novel | ||||||
| seed | ----------------------------------------------UGGGAGU------------------------ | 1 | novel | ||||||
| seed | -------------------------------GAGCGUG--------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------GAGCUAG------------------------------- | 1 | novel | ||||||
| seed | --------------------------------------CGAGCUA-------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------GUGGGAG------------------------- | 1 | novel | ||||||
| seed | --------------------CCAUUUU-------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| ---------------------------------------GAGCTAGTGGGAGTGGAAC------------------- | 19 | 1 | - | 2 | 2 | - | 1 | - | |
| -----------------------------------------GCTAGTGGGAGTGGAACGC----------------- | 19 | 3 | - | - | - | - | - | 1 | |
| ------------------------------------TGCGAGCTAGTGGGAGTGG---------------------- | 19 | - | - | - | - | - | - | 2 | |
| ---------------------------------------GAGCTAGTGGGAGTGGAACG------------------ | 20 | - | - | - | - | - | 2 | - | |
| ------------------------------------TGCGAGCTAGTGGGAGTGGAAC------------------- | 22 | - | - | - | 1 | - | - | - | |
| ---------------------------------------GAGCTAGTGGGAGTGGAACGC----------------- | 21 | - | - | - | 1 | - | - | - | |
| ---------------------------------------------GTGGGAGTGGAACGCACC-------------- | 18 | - | - | - | - | 1 | - | - | |
| -------------------GCCATTTTGCCCGAGCGTG--------------------------------------- | 19 | - | - | - | - | 1 | - | - | |
| -----------------------------------GTGCGAGCTAGTGGGAGTG----------------------- | 19 | - | - | - | 1 | - | - | - | |
| ------------------------------CGAGCGTGCGAGCTAGTGG---------------------------- | 19 | - | - | - | - | - | 1 | - | |
| --------------------------------------CGAGCTAGTGGGAGTGGAA-------------------- | 19 | - | - | - | - | 1 | - | - | |
| ---------------------------------------GAGCTAGTGGGAGTGGAA-------------------- | 18 | 1 | - | - | - | - | - | - | |
| -------------------------------------GCGAGCTAGTGGGAGTGGAAC------------------- | 21 | - | - | - | - | 1 | - | - | |
| --------------------------------------------AGTGGGAGTGGAACGCACCGGC----------- | 22 | - | 1 | - | - | - | - | - | |
| ---------------------------------------GAGCTAGTGGGAGTGGAACGCAC--------------- | 23 | - | - | 1 | - | - | - | - | |
| -----------------------------------GTGCGAGCTAGTGGGAGTGGAAC------------------- | 23 | - | - | - | - | 1 | - | - | |
| rat | ggtttctggcggtaccggcGCCATTTTGCCCGAGCGTGCGAGCTAGTGGGAGTGGAACGCACCGGCcgttgtagccg | ||||||||
| ***************************************************************************** | |||||||||
| ..............................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000012325 ENSRNOG00000009156 Tra2a | ||||||||
| rat | ((((...((((((....(((((((....(((.(((......)))...))).))))..)))....))))))..)))). | 1.000 -29.00 | |||||||
| rat | chromosome:4:77391348:77391424:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000012325|ENSRNOG00000009156 ## intergenic ## ENSRNOG00000009156|protein_coding|Tra2a|transformer 2 alpha homolog (Drosophila) Gene [Source:MGI Symbol;Acc:MGI:1933972] |
sblock9075 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.444 | no | no | 0.45/0.58 | 18/25/0.35 | 1.4 0.8 1.5 0.0 | 1.0 2.5 0.5 0.0 | 5 12 2 1 | 0 0 0 0 | 1 2 1 1 | 0 0 0 0 | 26 37 30 22 | -3 -14 -2 10 | 5arm_loop 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.37 0.55 0.35 0.37 | 4 5 3 5 | 20 | 2 | 1 | -1 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------GACAACA---------------------------------------------------------------- | 9 | novel | |
| seed | ---------------------------------ACCCUGC------------------------------------------------------------------------ | 3 | novel | |
| seed | --------------------------------------GCUGACA------------------------------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------------------------GAGACAC--------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------AGGUGGU--------------------------------- | 1 | novel | |
| seed | --------------------------------------------AACAGAG------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------GAGAUGA------------------------------------------------------------------------------ | 1 | miR-143 | |
| seed | ---------------------------------------------------------------ACACUGU------------------------------------------ | 1 | novel | |
| seed | --------------------------------GACCCUG------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----------------------------------------TGACAACAGAGCTGAAGGATGAGAC----------------------------------------------- | 25 | 1 | 2 | |
| --------------------------------GACCCTGCTGACAACAGAG------------------------------------------------------------- | 19 | - | 3 | |
| ----------------------------------------TGACAACAGAGCTGAAGGATGA-------------------------------------------------- | 22 | - | 2 | |
| ----------------------------------------TGACAACAGAGCTGAAGGATGAGA------------------------------------------------ | 24 | - | 2 | |
| -------------------------------------------CAACAGAGCTGAAGGATGAGACAC--------------------------------------------- | 24 | - | 1 | |
| -------------------------------------TGCTGACAACAGAGCTGAAGGATGA-------------------------------------------------- | 25 | - | 1 | |
| -----------------------------------------------------------------------GAGGTGGTGTTATATGGTG---------------------- | 19 | - | 1 | |
| -------------------------------TGACCCTGCTGACAACAGAGCTGAA-------------------------------------------------------- | 25 | - | 1 | |
| -------------------------------------TGCTGACAACAGAGCTGAAG------------------------------------------------------- | 20 | - | 1 | |
| ----------------------------------------TGACAACAGAGCTGAAGGA----------------------------------------------------- | 19 | - | 1 | |
| -----------------------------------------------------------TGAGACACTGTAGAGGTGGTGTT------------------------------ | 23 | - | 1 | |
| ----------------------------------------TGACAACAGAGCTGAAGG------------------------------------------------------ | 18 | - | 1 | |
| --------------------------AGAGATGACCCTGCTGACAACAGAG------------------------------------------------------------- | 25 | - | 1 | |
| --------------------------------------------------------------GACACTGTAGAGGTGGTGT------------------------------- | 19 | - | 1 | |
| rat | ggccggcagtggggtttaaaggccaaAGAGATGACCCTGCTGACAACAGAGCTGAAGGATGAGACACTGTAGAGGTGGTGTTATATGGTGcctaacgtaccccaaggttccc | |||
| **************************************************************************************************************** | ||||
| rat | ((..(((..((((((....((((.......(((((.(((((....((((..((........))...))))...))))).))))).....)))).....))))))..))))). | 0.710 -31.00 | ||
| rat | chromosome:4:164251691:164251802:1 | intergenic |
sblock9084 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.024 | no | no | 0.47/0.56 | 18/26/0.67 | 0.0 0.0 2.0 0.0 0.0 | 0.0 0.0 1.5 0.0 0.0 | 1 3 2 6 1 | 0 0 0 0 0 | 1 2 1 4 1 | 0 0 0 0 0 | 9 27 13 7 1 | 13 -6 3 15 23 | 5arm 5arm_loop_3arm 3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.42 0.40 0.46 0.50 0.39 | 4 6 5 5 3 | 18 | 5 | 0 | 1 |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------------------------------------GCUCAAU------------------- | 9 | novel | ||||
| seed | ----------------------------AGACAUG------------------------------------------------------ | 3 | novel | ||||
| seed | -----------------------------------------------------------------------ACCUGUC----------- | 1 | novel | ||||
| seed | ---------------------------------------------------CCUUCAC------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------------------------UGCUCAA-------------------- | 1 | novel | ||||
| seed | -------------------------------------------------------CACAGUC--------------------------- | 1 | novel | ||||
| seed | -------------------------------------------------------------CUGCUCA--------------------- | 1 | novel | ||||
| seed | ----------GUGGUAG------------------------------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T5S1 | T5S2 | |||
| --------------------------------------------------------------TGCTCAATGACCTGTCACGA------- | 20 | 1 | 2 | - | 4 | 1 | |
| ---------------------------TAGACATGGGAGATGGCAGA------------------------------------------ | 20 | - | 1 | - | 2 | - | |
| ---------AGTGGTAGTGGGTGGGTTT------------------------------------------------------------- | 19 | - | - | - | 1 | - | |
| ------------------------------------------------------------TCTGCTCAATGACCTGTCAC--------- | 20 | - | - | - | 1 | - | |
| ------------------------------------------------------TCACAGTCTGCTCAATGAC---------------- | 19 | - | - | - | 1 | - | |
| ----------------------------------------------------------------------GACCTGTCACGATTCCTG- | 18 | - | - | 1 | - | - | |
| --------------------------------------------------TCCTTCACAGTCTGCTCAATGACCTG------------- | 26 | - | - | - | 1 | - | |
| -------------------------------------------------------------CTGCTCAATGACCTGTCAC--------- | 19 | - | - | - | 1 | - | |
| --------------------------------------------------------------TGCTCAATGACCTGTCAC--------- | 18 | - | - | - | 1 | - | |
| rat | ggcaggactagtggtagtgggtgggttTAGACATGGGAGATGGCAGAatttccttcacagtcTGCTCAATGACCTGTCACGAttcctgt | ||||||
| ***************************************************************************************** | |||||||
| rat | .((((((...(((..((....(((((..((((..(((((((......))))))).....))))))))).....))..)))...)))))) | 1.000 -31.00 | |||||
| rat | chromosome:4:164255348:164255436:1 | intergenic |
novel_lenNOK_shortStem_mirtron_nonpairedHIGH_bulgeHIGH (40 loci)
block8033 [novel_lenNOK_shortStem_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.493 | no | no | 0.47/0.47 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 23 | 3arm | 1 | 4 | 0.32 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------CCCCUUU------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| ------------------------------------------------------------------TCCCCTTTCTCTCTCCAAT-- | 19 | 1 | |
| rat | cgccttggcacaggaaggtcgagcacagcatgagagtgtgcacgcacgtggttctgaagtgccaacTCCCCTTTCTCTCTCCAATgc | ||
| *************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>> | ENSRNOT00000043415 ENSRNOG00000033169 LOC685957 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>> | ENSRNOT00000050024 ENSRNOG00000033169 LOC685957 | ||
| rat | .((.((((...(((((((..((((((..((.(((.((((....))))....)))))..))))....)).)))))))....)))).)) | 0.470 -24.40 |
| rat | chromosome:10:15969676:15969762:-1 | Same_strand|Intronic_coding|ENSRNOT00000050024|ENSRNOG00000033169 ## ENSRNOG00000033169|protein_coding|LOC685957|cytoplasmic polyadenylation element binding protein 4 [Source:RefSeq_peptide;Acc:NP_001100462] |
block16172 [novel_lenNOK_shortStem_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.054 | no | no | 0.39/0.44 | 18/20/0.33 | 0.7 | 1.3 | 3 | 0 | 2 | 0 | 1 | 2 | 3arm | 1 | 3 | 0.44 | 5 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------UCCAUUU------------- | 2 | novel | |
| seed | -----------------------------------------CAUUUUU----------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T4S2 | |||
| --------------------------------------TTCCATTTTTCCCAGGAATC- | 20 | - | 1 | |
| ----------------------------------------CCATTTTTCCCAGGAATC- | 18 | - | 1 | |
| --------------------------------------TTCCATTTTTCCCAGGAA--- | 18 | 1 | - | |
| rat | tgaagtcttattatgggaagaattttggggacactgccTTCCATTTTTCCCAGGAATCa | |||
| *********************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>> | ENSRNOT00000036789 ENSRNOG00000003475 MGC112682 | |||
| rat | .............((((((((((...(((.......)))...))))))))))....... | 0.990 -14.70 | ||
| rat | chromosome:10:37144905:37144963:-1 | Same_strand|Boundary_coding|ENSRNOT00000036789|ENSRNOG00000003475 ## ENSRNOG00000003475|protein_coding|MGC112682|similar to RIKEN cDNA 0610039K22 (MGC112682), mRNA [Source:RefSeq_dna;Acc:NM_001017473] |
block47215 [novel_lenNOK_shortStem_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.197 | no | no | 0.50/0.50 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 28 | 3arm | 1 | 2 | 0.33 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------CUGGCAU------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| ----------------------------------------------------------------------------------CCTGGCATTCTTGAAGAG-- | 18 | 1 | |
| rat | tcctttgcggagagaaagggggtgtacgtatgcagtggggcttacgtgtgtgtgcgcgcggttcttttccactagggcacatCCTGGCATTCTTGAAGAGga | ||
| ****************************************************************************************************** | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>> | ENSRNOT00000000263 ENSRNOG00000000246 RGD1304846 | ||
| rat | ((((((...(((((....(((((((..((....(((((((....((((((....))))))......)))))))...)))))))))....)))))..)))))) | 0.610 -33.50 |
| rat | chromosome:10:98896929:98897030:-1 | Same_strand|Boundary_coding|ENSRNOT00000000263|ENSRNOG00000000246 ## ENSRNOG00000000246|protein_coding|RGD1304846|Archaemetzincin-2 (EC 3.-.-.-) (Archeobacterial metalloproteinase-like protein 2). [Source:UniProtKB/Swiss-Prot;Acc:Q400C7] |
block86886 [novel_lenNOK_shortStem_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.593 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 13 | 5arm | 1 | 1 | 0.44 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---GGUCAGA------------------------------------------------------------------ | 1 | miR-540 |
| len | cloning frequencies | ||
| T4S1 | |||
| --AGGTCAGAAGAAAAGCCA-------------------------------------------------------- | 18 | 1 | |
| rat | taAGGTCAGAAGAAAAGCCAtgctacttacactcagaggtgaccatagccctttccatggattgtccctggacttg | ||
| **************************************************************************** | |||
| >>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000003886 ENSRNOG00000002852 RGD1559961_predicted | ||
| rat | ((((..(((..((....((((((((....((((....))))....)))).......))))....)).)))..)))) | 0.720 -14.71 |
| rat | chromosome:10:73170463:73170538:1 | Same_strand|Boundary_coding|ENSRNOT00000003886|ENSRNOG00000002852 ## ENSRNOG00000002852|protein_coding|RGD1559961_predicted| |
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