miR-Intess™

other hairpins

novel_lenNOK_Multihit_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH (39 loci)

block1479745 [novel_lenNOK_Multihit_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.101

no

no

0.56/0.56

25/25/0.00

0.0

0.0

2

0

1

0

2

-3

5arm_loop

37

nd

0.40

4

2

1

na

na

		reads	miRBase family seed
seed	---GCACAGU-----------------------------------------------------	1	novel
seed	--------------------------------GCACAGU------------------------	1	novel
		len	cloning frequencies
			T5S2
	-------------------------------TGCACAGTCTTCCCTGGAGTGCTCA-------	25	1
	--TGCACAGTCTTCCCTGGAGTGCTCA------------------------------------	25	1
rat	caTGCACAGTCTTCCCTGGAGTGCTCAtccaTGCACAGTCTTCCCTGGAGTGCTCAtccatgc
	***************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000008664 ENSRNOG00000006419 NP_001101227.1
rat	((((...(((.((((..(((((((........)))).....)))..)))).)))....)))).	0.970 -15.40

rat

chromosome:3:98367425:98367487:1

Same_strand|Intronic_coding|ENSRNOT00000008664|ENSRNOG00000006419 ## Same_strand|Boundary_non-coding|ENSRNOT00000042366|ENSRNOG00000006419 ## ENSRNOG00000006419|protein_coding|NP_001101227.1|apoptosis, caspase activation inhibitor [Source:RefSeq_peptide;Acc:NP_001101227] ## {Repeats: trf 44 69 0 class=trf}

block1479746 [novel_lenNOK_Multihit_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.101

no

no

0.56/0.56

25/25/0.00

0.0

0.0

2

0

1

0

2

-3

5arm_loop

37

nd

0.40

4

2

1

na

na

		reads	miRBase family seed
seed	---GCACAGU-----------------------------------------------------	1	novel
seed	--------------------------------GCACAGU------------------------	1	novel
		len	cloning frequencies
			T5S2
	-------------------------------TGCACAGTCTTCCCTGGAGTGCTCA-------	25	1
	--TGCACAGTCTTCCCTGGAGTGCTCA------------------------------------	25	1
rat	caTGCACAGTCTTCCCTGGAGTGCTCAtccaTGCACAGTCTTCCCTGGAGTGCTCAtccatgc
	***************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000008664 ENSRNOG00000006419 NP_001101227.1
rat	((((...(((.((((..(((((((........)))).....)))..)))).)))....)))).	0.970 -15.40

rat

chromosome:3:98367454:98367516:1

Same_strand|Intronic_coding|ENSRNOT00000008664|ENSRNOG00000006419 ## Same_strand|Boundary_non-coding|ENSRNOT00000042366|ENSRNOG00000006419 ## ENSRNOG00000006419|protein_coding|NP_001101227.1|apoptosis, caspase activation inhibitor [Source:RefSeq_peptide;Acc:NP_001101227] ## {Repeats: trf 15 40 0 class=trf}

block907011 [novel_lenNOK_Multihit_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.431

no

no

0.74/0.74

19/19/0.00

0.0

0.0

1

0

1

0

2

-4

5arm_loop

25

nd

0.47

5

1

1

na

na

		reads	miRBase family seed
seed	---AGAGCCG-----------------------------	1	novel
		len	cloning frequencies
			T1S1
	--GAGAGCCGGACGGGCACTG------------------	19	1
rat	gcGAGAGCCGGACGGGCACTGggcgactctgtgcctcgc
	***************************************
	.............................................>>>>	ENSRNOT00000023740 ENSRNOG00000017661
rat	(((((.((((((...((.....))...)))).)))))))	0.430 -15.10

rat

chromosome:1:192689761:192689799:-1

intergenic

block1501937 [novel_lenNOK_Multihit_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.180

no

no

0.74/0.74

19/19/0.00

0.0

0.0

1

0

1

0

2

-4

5arm_loop

25

nd

0.47

5

1

1

na

na

		reads	miRBase family seed
seed	---AGAGCCG-----------------------------	1	novel
		len	cloning frequencies
			T1S1
	--GAGAGCCGGACGGGCACTG------------------	19	1
rat	gcGAGAGCCGGACGGGCACTGggcaactctgtgcctcgc
	***************************************
rat	(((((.((((((...((.....))...)))).)))))))	0.520 -16.20

rat

chromosome:3:144762503:144762541:1

intergenic

block1875977 [novel_lenNOK_Multihit_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.431

no

no

0.74/0.74

19/19/0.00

0.0

0.0

1

0

1

0

2

-4

5arm_loop

25

nd

0.47

5

1

1

na

na

		reads	miRBase family seed
seed	---AGAGCCG-----------------------------	1	novel
		len	cloning frequencies
			T1S1
	--GAGAGCCGGACGGGCACTG------------------	19	1
rat	gcGAGAGCCGGACGGGCACTGggcgactctgtgcctcgc
	***************************************
rat	(((((.((((((...((.....))...)))).)))))))	0.430 -15.10

rat

chromosome:5:136955197:136955235:1

intergenic

novel_lenNOK_cloningOK_randfoldOK_nonpairedHIGH_bulgeHIGH (39 loci)

block149328 [novel_lenNOK_cloningOK_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.008

no

no

0.16/0.17

18/19/0.00

0.0

0.0

38

0

10

0

29

0

5arm_loop

1

nd

0.39

4

41

10

na

na

		reads	miRBase family seed
seed	------------------------------UGGAAUA---------------------------------------------------------------	40	novel
seed	-------------------------------GGAAUAU--------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	-----------------------------TTGGAATATAAAAGTTTT-----------------------------------------------------	18	5	3	6	5	8	5	-	2	3	3
	------------------------------TGGAATATAAAAGTTTTTT---------------------------------------------------	19	-	-	-	-	-	-	1	-	-	-
rat	tgtcagtcattgttcaactccacacaattTTGGAATATAAAAGTTTTtttttaaaacaaatgttaaaaaagtttgctggagtgggaaagatggctcagca
	****************************************************************************************************
rat	.((.(((((((.(((.((((((((.((((((..(((((....(((((.....)))))..)))))...)))))))).))))))..))).)))))))..)).	0.960 -25.20

rat

chromosome:11:21993501:21993600:1

intergenic ## {Repeats: dust 21993547 21993552 0 class=dust}

block340323 [novel_lenNOK_cloningOK_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.003

no

no

0.56/0.61

18/19/0.00

0.9

1.4

10

0

6

0

27

10

3arm

2

nd

0.39

4

10

6

na

na

		reads	miRBase family seed
seed	------------------------------------------------------------------------CACAACA---------------------------------------	4	novel
seed	-----------------------------------------------------------------------UCACAAC----------------------------------------	4	novel
seed	-------------------------------------------------------------------------ACAACAC--------------------------------------	1	novel
seed	--------------------------------------------------------------------------CAACACA-------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T4S1	T4S2	T5S2
	----------------------------------------------------------------------CTCACAACACACCCCCTAC-----------------------------	19	-	1	1	-	-	1
	-----------------------------------------------------------------------TCACAACACACCCCCTACC----------------------------	19	1	-	-	1	-	-
	-----------------------------------------------------------------------TCACAACACACCCCCTAC-----------------------------	18	-	-	1	-	1	-
	------------------------------------------------------------------------CACAACACACCCCCTACC----------------------------	18	1	-	-	-	-	-
	----------------------------------------------------------------------CTCACAACACACCCCCTA------------------------------	18	1	-	-	-	-	-
	-------------------------------------------------------------------------ACAACACACCCCCTACCT---------------------------	18	1	-	-	-	-	-
rat	gttgctgaggactgaggctaggaatatagtaggccatgaagggtgagcagtgttgggaacctcacacaggCTCACAACACACCCCCTACCTatgtgtatatctttgtcactgagcaac
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000052035 ENSRNOG00000002256 Art3
rat	((((((.(((((.((((.((...((((((((((...((....((((((.((((.((....)).))))..))))))....))...))))).)))))...)))))).))).)).))))))	0.960 -43.80

rat

chromosome:14:17277931:17278048:-1

Same_strand|Boundary_non-coding|ENSRNOT00000060712|ENSRNOG00000002256 ## Same_strand|Intronic_non-coding|ENSRNOT00000052035|ENSRNOG00000002256 ## ENSRNOG00000002256|protein_coding|Art3|ADP-ribosyltransferase 3 [Source:RefSeq_peptide;Acc:NP_001012034]

block416340 [novel_lenNOK_cloningOK_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.006

no

no

0.50/0.56

18/18/0.00

0.0

0.0

8

0

6

0

21

1

3arm

1

nd

0.33

4

13

6

na

na

		reads	miRBase family seed
seed	-------------------------------------------GGGGCAA-------------------------------	12	novel
seed	------------------------------------------UGGGGCA--------------------------------	1	novel
		len	cloning frequencies
			T2S1	T2S2	T3S1	T3S2	T5S1	T5S2
	------------------------------------------TGGGGCAAAATCCTGGAA---------------------	18	1	2	1	1	6	1
	-----------------------------------------GTGGGGCAAAATCCTGGA----------------------	18	1	-	-	-	-	-
rat	cttcctgctgactgctgacattggggtgtccttatggggaggTGGGGCAAAATCCTGGAAtgttggccaagtccaggaaga
	*********************************************************************************
rat	(((((((..((((((..((((((((((..((((((......))))))....)))))..)))))..))..))))))))))).	1.000 -32.90

rat

chromosome:14:90476364:90476444:1

intergenic

block457176 [novel_lenNOK_cloningOK_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.004

no

no

0.11/0.16

18/20/0.55

0.3

0.0

15

0

6

0

6

17

3arm

1

nd

0.35

5

20

6

na

na

		reads	miRBase family seed
seed	-------------------------------------------------------------------UUAUACA------------------	14	novel
seed	--------------------------------------------------------------------UAUACAA-----------------	6	let-7b*
		len	cloning frequencies
			T1S1	T1S2	T2S1	T4S1	T5S1	T5S2
	------------------------------------------------------------------TTTATACAAACTATATAATC------	20	5	3	2	1	-	-
	-------------------------------------------------------------------TTATACAAACTATATAATC------	19	5	-	-	-	-	-
	------------------------------------------------------------------TTTATACAAACTATATAAT-------	19	1	-	-	-	-	1
	------------------------------------------------------------------TTTATACAAACTATATAA--------	18	1	-	-	-	-	-
	-------------------------------------------------------------------TTATACAAACTATATAAT-------	18	-	-	-	-	1	-
rat	tcattaaaagataatagttgatataaataaggacaaagggatatacatttcctatggtttttaaaaTTTATACAAACTATATAATCatatga
	********************************************************************************************
rat	((((......((.((((((..(((((((((((((...((((........))))...)))))))...))))))..))))))))......))))	0.990 -17.30

rat

chromosome:15:72932846:72932937:-1

intergenic

block613261 [novel_lenNOK_cloningOK_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.008

no

no

0.50/0.53

18/19/0.00

0.0

0.0

10

0

3

0

7

11

5arm

1

nd

0.44

4

15

3

na

na

		reads	miRBase family seed
seed	--------GGGGUGG--------------------------------------------------------------------------------	15	novel
		len	cloning frequencies
			T1S1	T2S1	T4S2
	-------TGGGGTGGGGACAAAAAA----------------------------------------------------------------------	18	7	3	2
	-------TGGGGTGGGGACAAAAAAC---------------------------------------------------------------------	19	2	1	-
rat	ggatagaTGGGGTGGGGACAAAAAAcacttgtttacctcacactaacgtaagcaaaagtaataaagaaaaccagtgtccaattctgatttatccc
	***********************************************************************************************
rat	((((((((.(((...(((((....((..((((((((...........))))))))..))...............)))))...))).)))))))).	0.630 -23.61

rat

chromosome:17:42334008:42334102:-1

intergenic

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