miR-Intess™

other hairpins

novel_mirtron_bulgeHIGH (37 loci)

block2994946 [novel_mirtron_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.208

no

no

0.33/0.33

24/24/1.00

0.0

0.0

1

0

1

0

23

3

3arm

1

0

0.29

4

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------------------------------UAUUACU---------------------------------------	1	novel
		len	cloning frequencies
			T4S1
	----------------------------------------------------------------GTATTACTCTGAATTATGATGCAG-----------------------	24	1
rat	gctggctatgaacaactttccttgcgaaaatatagtgtatgcaaagtttaaaagttatatatttGTATTACTCTGAATTATGATGCAGgatgaagtcaacaggctgtcagc
	***************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000035692 ENSRNOG00000003667 Dmd
rat	((((((..((....(((((.((((((..(((.(((.(((((((((................))))))).)).))).)))....))))))..)))))...))....))))))	0.520 -23.09

rat

chromosome:X:70206733:70206843:1

Same_strand|Intronic_coding|ENSRNOT00000035692|ENSRNOG00000003667 ## Same_strand|Boundary_non-coding|ENSRNOT00000058357|ENSRNOG00000003667 ## ENSRNOG00000003667|protein_coding|Dmd|Dystrophin (Fragment). [Source:UniProtKB/Swiss-Prot;Acc:P11530]

novel_Multihit_loopOverlap_randfoldOK (36 loci)

block155426 [novel_Multihit_loopOverlap_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.001

no

no

0.46/0.46

24/24/1.00

0.0

0.0

1

0

1

0

33

-2

3arm_loop

158

nd

0.12

1

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------------------------GGAAUAC-------------------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	----------------------------------------------------------AGGAATACATGGTAGCCAGTGTGT---------------------------------	24	1
rat	acgggaatacatggtagccagggtgttcacgggaatacatggtagccagtgtgttcacAGGAATACATGGTAGCCAGTGTGTtcacaggaatacatggtagccagggtgttcacg
	*******************************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000051546 ENSRNOG00000032380
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000042801 ENSRNOG00000028216 LOC304000
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000032566 ENSRNOG00000028216 LOC304000
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000032555 ENSRNOG00000028216 LOC304000
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000042063 ENSRNOG00000028216 LOC304000
rat	.((.((((((.((((.((((..((((((....(((((((((((.((((.(((((((....))))))))))).)))).)))))))....)))))).)))).))))..)))))).))	0.990 -54.40

rat

chromosome:11:36737749:36737863:1

Same_strand|Intronic_coding|ENSRNOT00000042801|ENSRNOG00000028216 ## Opposite_strand|Intronic_coding|ENSRNOT00000051546|ENSRNOG00000032380 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000043924|ENSRNOG00000032380 ## ENSRNOG00000028216|protein_coding|LOC304000|immunoglobulin superfamily, member 5 [Source:RefSeq_peptide;Acc:NP_001006991] ## ENSRNOG00000032380|protein_coding|| ## {Repeats: trf 6125 6149 0 class=trf}

block155431 [novel_Multihit_loopOverlap_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.001

no

no

0.46/0.46

24/24/1.00

0.0

0.0

1

0

1

0

33

-2

3arm_loop

158

nd

0.12

1

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------------------------GGAAUAC-------------------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	----------------------------------------------------------AGGAATACATGGTAGCCAGTGTGT---------------------------------	24	1
rat	acgggaatacatggtagccagggtgttcacgggaatacatggtagccagtgtgttcacAGGAATACATGGTAGCCAGTGTGTtcacaggaatacatggtagccagggtgttcacg
	*******************************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000051546 ENSRNOG00000032380
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000042801 ENSRNOG00000028216 LOC304000
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000032566 ENSRNOG00000028216 LOC304000
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000032555 ENSRNOG00000028216 LOC304000
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000042063 ENSRNOG00000028216 LOC304000
rat	.((.((((((.((((.((((..((((((....(((((((((((.((((.(((((((....))))))))))).)))).)))))))....)))))).)))).))))..)))))).))	0.990 -54.40

rat

chromosome:11:36738141:36738255:1

Same_strand|Intronic_coding|ENSRNOT00000042801|ENSRNOG00000028216 ## Opposite_strand|Intronic_coding|ENSRNOT00000051546|ENSRNOG00000032380 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000043924|ENSRNOG00000032380 ## ENSRNOG00000028216|protein_coding|LOC304000|immunoglobulin superfamily, member 5 [Source:RefSeq_peptide;Acc:NP_001006991] ## ENSRNOG00000032380|protein_coding|| ## {Repeats: trf 5733 5757 0 class=trf}

block439702 [novel_Multihit_loopOverlap_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.003

no

no

0.55/0.55

20/20/1.00

0.0

0.0

1

0

1

0

26

-2

3arm_loop

21

nd

0.15

1

1

1

na

na

		reads	miRBase family seed
seed	----------------------------------------------GUCUGAC--------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	---------------------------------------------AGTCTGACAGCTGTGCTGAG--------------------------	20	1
rat	gccgtctccctcactgtgtctccacagcacagtagtacaggtcagAGTCTGACAGCTGTGCTGAGggcttctgcagacggaaggagcggct
	*******************************************************************************************
	-----------------------------------------------------------------------------------------------------	ENSRNOT00000060256 ENSRNOG00000009074 Q569A8_RAT
	-----------------------------------------------------------------------------------------------------	ENSRNOT00000012019 ENSRNOG00000009074 Q569A8_RAT
	-----------------------------------------------------------------------------------------------------	ENSRNOT00000060255 ENSRNOG00000009074 Q569A8_RAT
	-----------------------------------------------------------------------------------------------------	ENSRNOT00000060254 ENSRNOG00000009074 Q569A8_RAT
	-----------------------------------------------------------------------------------------------------	ENSRNOT00000060253 ENSRNOG00000009074 Q569A8_RAT
	-----------------------------------------------------------------------------------------------------	ENSRNOT00000060252 ENSRNOG00000009074 Q569A8_RAT
rat	((((.((((.((.((((...(((.(((((((((.((.((((......)))))).))))))))).))).....))))...)).)))))))).	0.930 -42.80

rat

chromosome:15:31797052:31797142:-1

Opposite_strand|Intronic_coding|ENSRNOT00000060252|ENSRNOG00000009074 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000060251|ENSRNOG00000009074 ## ENSRNOG00000009074|protein_coding|Q569A8_RAT|RGD1359684 protein. [Source:UniProtKB/TrEMBL;Acc:Q569A8]

block483856 [novel_Multihit_loopOverlap_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.009

no

no

0.55/0.55

20/20/1.00

0.0

0.0

1

0

1

0

24

-2

3arm_loop

21

nd

0.15

1

1

1

na

na

		reads	miRBase family seed
seed	--------------------------------------------GUCUGAC------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	-------------------------------------------AGTCTGACAGCTGTGCTGAG------------------------	20	1
rat	cgtctccctcactgtgtctccacagcacagtagtacagggcagAGTCTGACAGCTGTGCTGAGggcttctgcagactgaaggagcgt
	***************************************************************************************
rat	((.((((.(((((((...(((.(((((((((.((.((((......)))))).))))))))).))).....))))..))).)))))).	0.870 -35.80

rat

chromosome:15:29553100:29553186:1

intergenic

block483970 [novel_Multihit_loopOverlap_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.003

no

no

0.55/0.55

20/20/1.00

0.0

0.0

1

0

1

0

26

-2

3arm_loop

21

nd

0.15

1

1

1

na

na

		reads	miRBase family seed
seed	----------------------------------------------GUCUGAC--------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	---------------------------------------------AGTCTGACAGCTGTGCTGAG--------------------------	20	1
rat	gccgtctctctcactgtgtctccacagcacagtagtacagggcagAGTCTGACAGCTGTGCTGAGggcttctgcagacggaaggagcggct
	*******************************************************************************************
rat	((((.(((..((.((((...(((.(((((((((.((.((((......)))))).))))))))).))).....))))...))..))))))).	0.950 -41.30

rat

chromosome:15:29756878:29756968:1

intergenic

block483987 [novel_Multihit_loopOverlap_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.006

no

no

0.55/0.55

20/20/1.00

0.0

0.0

1

0

1

0

26

-2

3arm_loop

21

nd

0.15

1

1

1

na

na

		reads	miRBase family seed
seed	----------------------------------------------GUCUGAC--------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	---------------------------------------------AGTCTGACAGCTGTGCTGAG--------------------------	20	1
rat	gccgtctccctcactgtgtctccacagcacagtagtacagggcagAGTCTGACAGCTGTGCTGAGggcttctgcagacggaaggagcggct
	*******************************************************************************************
rat	((((.((((.((.((((...(((.(((((((((.((.((((......)))))).))))))))).))).....))))...)).)))))))).	0.950 -42.70

rat

chromosome:15:29774348:29774438:1

intergenic

block484038 [novel_Multihit_loopOverlap_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.006

no

no

0.55/0.55

20/20/1.00

0.0

0.0

1

0

1

0

26

-2

3arm_loop

21

nd

0.15

1

1

1

na

na

		reads	miRBase family seed
seed	----------------------------------------------GUCUGAC--------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	---------------------------------------------AGTCTGACAGCTGTGCTGAG--------------------------	20	1
rat	gccgtctccctcactgtgtctccacagcacagtagtacagggcagAGTCTGACAGCTGTGCTGAGggcttctgcagacggaaggagcggct
	*******************************************************************************************
rat	((((.((((.((.((((...(((.(((((((((.((.((((......)))))).))))))))).))).....))))...)).)))))))).	0.950 -42.70

rat

chromosome:15:29855691:29855781:1

intergenic

block484210 [novel_Multihit_loopOverlap_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.006

no

no

0.55/0.55

20/20/1.00

0.0

0.0

1

0

1

0

26

-2

3arm_loop

21

nd

0.15

1

1

1

na

na

		reads	miRBase family seed
seed	----------------------------------------------GUCUGAC--------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	---------------------------------------------AGTCTGACAGCTGTGCTGAG--------------------------	20	1
rat	gccgtctccctcactgtgtctccacagcacagtagtacagggcagAGTCTGACAGCTGTGCTGAGggcttctgcagacggaaggagcggct
	*******************************************************************************************
rat	((((.((((.((.((((...(((.(((((((((.((.((((......)))))).))))))))).))).....))))...)).)))))))).	0.950 -42.70

rat

chromosome:15:30315801:30315891:1

intergenic

block638330 [novel_Multihit_loopOverlap_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.008

no

no

0.50/0.50

24/24/1.00

0.0

0.0

1

0

1

0

15

-1

5arm_loop

26

nd

0.29

2

1

1

na

na

		reads	miRBase family seed
seed	----------------UUACCUG------------------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	---------------TTTACCTGGCAGATCTGGTCTCTG--------------------------------	24	1
rat	gacattctaaatattTTTACCTGGCAGATCTGGTCTCTGcatctggggagatggatgttgggtaaagtgtc
	***********************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000057547 ENSRNOG00000028913 LOC689206
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000047232 ENSRNOG00000028913 LOC689206
rat	(((((..........((((((..(((..(((.((((((........))))))))))))..)))))))))))	0.990 -20.60

rat

chromosome:17:97211344:97211414:-1

Same_strand|Intronic_non-coding|ENSRNOT00000047232|ENSRNOG00000028913 ## Same_strand|Boundary_non-coding|ENSRNOT00000046770|ENSRNOG00000028913 ## ENSRNOG00000028913|protein_coding|LOC689206|

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other hairpins:

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