other hairpins
novel_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH (36 loci)
block998926 [novel_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.473 | no | no | 0.40/0.50 | 19/24/0.80 | 0.0 0.0 0.0 | 0.0 0.0 2.0 | 1 1 3 | 0 0 0 | 1 1 1 | 0 0 0 | 7 13 18 | 0 -5 -15 | 5arm 5arm_loop_3arm 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.45 0.53 0.62 | 4 4 7 | 5 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------UCAGCAA------------------------------------- | 3 | novel |
| seed | --------CCCAUUG------------------------------------------------ | 1 | novel |
| seed | --------------GAGCUUC------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------TTCAGCAACATTGGTGAAAGAGGA--------------------- | 24 | 1 | |
| -------TCCCATTGAGCTTCAGCAAC------------------------------------ | 20 | 1 | |
| ------------------TTCAGCAACATTGGTGAAAGAG----------------------- | 22 | 1 | |
| -------------TGAGCTTCAGCAACATTGG------------------------------- | 19 | 1 | |
| ------------------TTCAGCAACATTGGTGAAAG------------------------- | 20 | 1 | |
| rat | tgtccctTCCCATTGAGCTTCAGCAACATTGGTGAAAGAGGAggaacaatagactgaaggaca | ||
| *************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | ||
| rat | .((.(((((..((((..((((....((....)).......))))..)))).....))))))). | 0.530 -11.30 |
| rat | chromosome:1:129036658:129036720:1 | Same_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
block15819 [novel_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.318 | no | no | 0.37/0.54 | 19/24/0.80 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 2 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 15 24 31 | 4 -3 -15 | 5arm 5arm_loop 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.38 0.58 0.50 | 5 6 6 | 5 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------CAAUGAG---------------------------------------------------------- | 2 | novel |
| seed | --------------------------------CAGUAAG------------------------------------------ | 2 | novel |
| seed | -------------------------AUUUCCU------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------CCAATGAGCAATTTCCTCAGT--------------------------------------------- | 21 | 2 | |
| -------------------------------TCAGTAAGCGAATGGCGGGAGAGT-------------------------- | 24 | 2 | |
| ------------------------AATTTCCTCAGTAAGCGAA-------------------------------------- | 19 | 1 | |
| rat | ttcgctagcctaaggCCAATGAGCAATTTCCTCAGTAAGCGAATGGCGGGAGAGTgcataccattccctcagcctggtgga | ||
| ********************************************************************************* | |||
| rat | ((((((((.((.(((..((((.(((.((((((......((.....)))))))).)))....)))).))).)).)))))))) | 0.500 -22.30 |
| rat | chromosome:10:36519436:36519516:-1 | intergenic |
block274782 [novel_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.768 | no | no | 0.52/0.55 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 31 37 | -2 -9 | 5arm_loop 5arm_loop_3arm | 1 1 | 51 58 | 0.40 0.38 | 3 5 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------GCAAAAG--------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------CGAUGAG--------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| -------------------------------CCGATGAGCAAAAGCACAGC--------------------------------------------------- | 20 | 1 | - | |
| -------------------------------------AGCAAAAGCACAGCCTGTGAG-------------------------------------------- | 21 | - | 1 | |
| rat | gcacccaggatattgtatttggagaaatagaCCGATGAGCAAAAGCACAGCCTGTGAGctcccttgcctgtcagctgcttcatcgagcgaggcctttgtgtg | |||
| ****************************************************************************************************** | ||||
| +++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..................................................................... | ENSRNOT00000058423 ENSRNOG00000038372 Ndufs2 | |||
| rat | ((((..(((...((((..(((..(((.(((...(((..((((.(((.((.....)).)))...))))..)))..))).)))..)))))))..)))..)))). | 0.590 -25.10 | ||
| rat | chromosome:13:87124553:87124654:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000058423|ENSRNOG00000038372 ## ENSRNOG00000038372|protein_coding|Ndufs2|NADH dehydrogenase (ubiquinone) Fe-S protein 2 Gene [Source:MGI (curated);Acc:Ndufs2-003] |
block850457 [novel_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.503 | no | no | 0.57/0.67 | 21/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 8 16 | -4 -14 | 5arm_loop 5arm_loop_3arm | 2 2 | nd nd | 0.38 0.48 | 5 7 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------UGCAGAC---------------------------------------------- | 1 | novel | |
| seed | ---------GCGCUGU------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T4S2 | |||
| --------CGCGCTGTCTGCAGACTCTCC----------------------------------------- | 21 | 1 | - | |
| ----------------CTGCAGACTCTCCACAAGCTTGC------------------------------- | 23 | - | 1 | |
| rat | ctaccctcCGCGCTGTCTGCAGACTCTCCACAAGCTTGCggccagcatagatcagacgcgaatttagtag | |||
| ********************************************************************** | ||||
| rat | ((((....(((((((.(((((..((.......))..))))).))))...........)))......)))) | 0.540 -15.10 | ||
| rat | chromosome:1:59032016:59032085:-1 | intergenic |
block850465 [novel_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.503 | no | no | 0.57/0.67 | 21/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 8 16 | -4 -14 | 5arm_loop 5arm_loop_3arm | 2 2 | nd nd | 0.38 0.48 | 5 7 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------UGCAGAC---------------------------------------------- | 1 | novel | |
| seed | ---------GCGCUGU------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T4S2 | |||
| --------CGCGCTGTCTGCAGACTCTCC----------------------------------------- | 21 | 1 | - | |
| ----------------CTGCAGACTCTCCACAAGCTTGC------------------------------- | 23 | - | 1 | |
| rat | ctaccctcCGCGCTGTCTGCAGACTCTCCACAAGCTTGCggccagcatagatcagacgcgaatttagtag | |||
| ********************************************************************** | ||||
| rat | ((((....(((((((.(((((..((.......))..))))).))))...........)))......)))) | 0.540 -15.10 | ||
| rat | chromosome:1:59285503:59285572:-1 | intergenic |
block1697120 [novel_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.855 | no | no | 0.46/0.55 | 20/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 15 21 | 0 -10 | 5arm 5arm_loop_3arm | 2 2 | nd nd | 0.35 0.50 | 4 6 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------CGACUGU------------------------------------------ | 1 | novel | |
| seed | ----------------GGUUCUC------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------------TCGACTGTGCTCAGCTATTTCTGA-------------------------- | 24 | - | 1 | |
| ---------------TGGTTCTCGACTGTGCTCAG------------------------------------ | 20 | 1 | - | |
| rat | gtggacctctgtagaTGGTTCTCGACTGTGCTCAGCTATTTCTGAtccatgaggatgccctgacatgccac | |||
| *********************************************************************** | ||||
| rat | ((((.......(((...((((((....(((.((((......))))..)))))))))...))).....)))) | 0.620 -12.90 | ||
| rat | chromosome:4:164707517:164707587:1 | intergenic |
sblock10684 [novel_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.608 | no | no | 0.44/0.52 | 18/22/0.75 | 0.0 0.3 | 0.0 0.7 | 1 3 | 0 0 | 1 2 | 0 0 | 10 14 | -2 -21 | 5arm_loop 3arm_loop | 4 4 | nd nd | 0.44 0.52 | 4 7 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------GGAUGUC---------------------------- | 2 | novel | |
| seed | -----------UGGUGCU------------------------------------------- | 1 | novel | |
| seed | ---------------------------GAUGUCA--------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------------TGGATGTCAAGGTTCTGGCAGT-------------- | 22 | - | 1 | |
| -------------------------TGGATGTCAAGGTTCTGGCAG--------------- | 21 | 1 | - | |
| --------------------------GGATGTCAAGGTTCTGGCAGT-------------- | 21 | - | 1 | |
| ----------CTGGTGCTTTATATCTGG--------------------------------- | 18 | 1 | - | |
| rat | tgaggacaatCTGGTGCTTTATATCTGGATGTCAAGGTTCTGGCAGTacgtaatggcttca | |||
| ************************************************************* | ||||
| rat | .((((.((((.((.((((....((((........))))...)))).)).))..)).)))). | 0.920 -11.50 | ||
| rat | chromosome:7:18792016:18792076:-1 | intergenic |
sblock10694 [novel_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.608 | no | no | 0.44/0.52 | 18/22/0.75 | 0.0 0.3 | 0.0 0.7 | 1 3 | 0 0 | 1 2 | 0 0 | 10 14 | -2 -21 | 5arm_loop 3arm_loop | 4 4 | nd nd | 0.44 0.52 | 4 7 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------GGAUGUC---------------------------- | 2 | novel | |
| seed | -----------UGGUGCU------------------------------------------- | 1 | novel | |
| seed | ---------------------------GAUGUCA--------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------------TGGATGTCAAGGTTCTGGCAGT-------------- | 22 | - | 1 | |
| -------------------------TGGATGTCAAGGTTCTGGCAG--------------- | 21 | 1 | - | |
| --------------------------GGATGTCAAGGTTCTGGCAGT-------------- | 21 | - | 1 | |
| ----------CTGGTGCTTTATATCTGG--------------------------------- | 18 | 1 | - | |
| rat | tgaggacaatCTGGTGCTTTATATCTGGATGTCAAGGTTCTGGCAGTacgtaatggcttca | |||
| ************************************************************* | ||||
| rat | .((((.((((.((.((((....((((........))))...)))).)).))..)).)))). | 0.920 -11.50 | ||
| rat | chromosome:7:18799583:18799643:-1 | intergenic |
sblock1879 [novel_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.789 | no | no | 0.33/0.39 | 18/22/0.71 | 0.0 0.0 | 0.0 0.0 | 4 1 | 0 0 | 1 1 | 0 0 | 24 23 | -10 1 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.36 0.38 | 4 3 | 7 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------UGGAGGU----------------------------------------------------- | 5 | novel |
| seed | ------------------------------------------AACAUCG------------------------------------ | 1 | novel |
| seed | ----------------------CUUUGGA-------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------TTGGAGGTTTCACTTTTGAACA--------------------------------------- | 22 | 4 | |
| -----------------------------------------GAACATCGGAAAAGTAATTCT----------------------- | 21 | 1 | |
| ---------------------TCTTTGGAGGTTTCACTTT--------------------------------------------- | 19 | 1 | |
| ------------------------TTGGAGGTTTCACTTTTG------------------------------------------- | 18 | 1 | |
| rat | ggtccaatggggatggcagtttctTTGGAGGTTTCACTTTTGAACAtcggaaaagtaattctctcctcccacagttgtgtgattg | ||
| ************************************************************************************* | |||
| rat | ((((((.((((((.((.((((.((((...(((((((....)))).)))...)))).))))....)))))).))....)).)))). | 0.620 -17.00 |
| rat | chromosome:1:124860859:124860943:1 | intergenic |
novel_5varHIGH_nonpairedHIGH_bulgeHIGH (35 loci)
block208777 [novel_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.032 | no | no | 0.35/0.39 | 20/23/1.00 | 1.5 | 0.0 | 2 | 0 | 2 | 0 | 29 | 2 | 3arm | 1 | nd | 0.43 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------UCCUUGA----------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------CCUUCCU-------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----------------------------------------------------TCCTTCCTTGAATCTCACTAACA----------------------------- | 23 | 1 | - | |
| -------------------------------------------------------TTCCTTGAATCTCACTAACA----------------------------- | 20 | - | 1 | |
| rat | gggaagaggaatggaaagggagggtgggagatgggtggaaccctcaagtagtTCCTTCCTTGAATCTCACTAACAtcctttctttgacctcagcagttataccc | |||
| ******************************************************************************************************** | ||||
| rat | .....((((...((((((((..(((((((...(((.(((((.........)))))..)))....)))))))....))))))))....))))............. | 0.980 -34.60 | ||
| rat | chromosome:12:5604171:5604274:1 | intergenic |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 30640 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.