miR-Intess: classification

other hairpins

novel_5varHIGH_nonpairedHIGH_bulgeHIGH (35 loci)

block881410 [novel_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.610	no	no	0.55/0.58	20/24/1.00	2.0	0.0	2	0	1	0	8	20	3arm	1	nd	0.45	5	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------CCCCUGA------------------------	1	novel
seed	-------------------------------------------------------------------------------------UGAGCUG--------------------	1	novel
		len	cloning frequencies
			T5S1
	--------------------------------------------------------------------------------TCCCCTGAGCTGCTGTTGGACTCT--------	24	1
	------------------------------------------------------------------------------------CTGAGCTGCTGTTGGACTCT--------	20	1
rat	atgtctttctaaagatgttgccattggaaaaaataacaccctggaactgaggtgctaggagccctccaggctgccaagtcTCCCCTGAGCTGCTGTTGGACTCTtagatatt
	****************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000016427 ENSRNOG00000012031 St8sia2
rat	((((((.(((((....((.((((..(((........((.((((((.....((.((.....)))))))))).)).......)))..)).)).))..))))).....)))))).	0.510 -25.56

rat

chromosome:1:129016361:129016472:-1

block1696241 [novel_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.101	no	no	0.32/0.36	20/22/1.00	2.0	1.2	5	0	2	0	5	1	3arm	1	nd	0.32	4	5	2	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------UACUUGU-----------------	2	novel
seed	-------------------------------------------------------------------AGCUACU--------------------	2	novel
seed	---------------------------------------------------------------GACUAGC------------------------	1	novel
		len	cloning frequencies
			T1S1	T5S1
	---------------------------------------------------------------------CTACTTGTTATGACTAACTG-----	20	2	-
	------------------------------------------------------------------TAGCTACTTGTTATGACTAACT------	22	-	2
	--------------------------------------------------------------TGACTAGCTACTTGTTATGACT----------	22	-	1
rat	ggaagataagttcccagtaaccctagttcagtcaccccaccccacccaaaaacgtacagccgTGACTAGCTACTTGTTATGACTAACTGctccc
	**********************************************************************************************
rat	((.((...((((....(((((..(((((.((((((..........................)))))))))))...)))))....)))).)))).	1.000 -17.37

rat

chromosome:4:164264183:164264276:1

intergenic

block841558 [novel_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.062	no	no	0.42/0.42	19/24/0.75	1.2	0.0	4	0	2	0	22	12	5arm	4	nd	0.37	4	4	2	na	na

		reads	miRBase family seed
seed	-----------------------UUGCUCU------------------------------------------------------------------------------------------	3	novel
seed	----------------------------CUGAUUG-------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T4S2	T5S1
	----------------------TTTGCTCTGATTGTCTTGGGTACT--------------------------------------------------------------------------	24	-	3
	---------------------------TCTGATTGTCTTGGGTACT--------------------------------------------------------------------------	19	1	-
rat	gcaccattgtacaggttcagcaTTTGCTCTGATTGTCTTGGGTACTaaggtcaaagtcaatgattttggcttttggtttcttatccaacatattatttgtttgtcctgtgattattctgt
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000043239 ENSRNOG00000033820
rat	(((..((..((((((...((((..((...((.(((....(((.(((((((((((((((...)))))))))))).))).)))....)))))...))..))))...))))))...))..)))	0.630 -26.50

rat

chromosome:1:47789613:47789732:-1

Same_strand|Intronic_coding|ENSRNOT00000043239|ENSRNOG00000033820 ## ENSRNOG00000033820|protein_coding||

block870743 [novel_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.012	no	no	0.29/0.33	19/24/0.75	1.3 0.0	1.0 0.0	3 1	0 0	3 1	0 0	19 31	7 2	5arm 5arm	1 3	nd nd	0.38 0.32	8 4	4	3	na	na

		reads	miRBase family seed
seed	----------------------GCAGACA-------------------------------------------------------------------------	2	novel
seed	--------------------------------UCAAAUG---------------------------------------------------------------	1	novel
seed	--------------------AUGCAGA---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S2	T2S2	T5S1
	---------------------TGCAGACAAATTCAAATGTCT------------------------------------------------------------	21	-	-	1
	-------------------TATGCAGACAAATTCAAATGTCT------------------------------------------------------------	23	-	1	-
	-------------------------------TTCAAATGTCTAAATGAGG----------------------------------------------------	19	-	-	1
	---------------------TGCAGACAAATTCAAATGTCTAAA---------------------------------------------------------	24	1	-	-
rat	taaaacagagtgcctaggcTATGCAGACAAATTCAAATGTCTAAATGAGGccttgaggaaatttggacttttgtgcatagttttagaagtttctggagttta
	******************************************************************************************************
rat	.....(((((...((((((((((((........((((.((((((((....((....))..)))))))).)))))))))))))).))....))))).......	0.970 -27.70

rat

chromosome:1:102014674:102014775:-1

intergenic

novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (35 loci)

block306025 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.007	no	no	0.68/0.68	19/19/0.00	0.0	0.0	1	0	1	0	41	-3	3arm_loop	13	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------CCCAGGG----------------------------------------------------	1	novel
		len	cloning frequencies
			T2S1
	----------------------------------------------------GCCCAGGGAAAGCGGCGTT-----------------------------------------	19	1
rat	agggccctcgtctacggccataccaccctgaacgcgcctgatctctgtgtgtGCCCAGGGAAAGCGGCGTTatgacaggaaacagagtggctatggcgggcagacgaagccc
	****************************************************************************************************************
rat	.((((..((((((...((((((((((((((...(((((...((((((........))))))....))))).....)))).......)))).))))))....)))))).))))	0.990 -45.71

rat

chromosome:13:46603740:46603851:1

intergenic

block389144 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.004	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	13	-4	3arm_loop	14	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------AACAGCU------------------------	1	novel
		len	cloning frequencies
			T1S1
	----------------------------CAACAGCTAAACACTTCAG-------------	19	1
rat	ttaatttggtctactaaggaatctagctCAACAGCTAAACACTTCAGaccacatagttaa
	************************************************************
rat	.(((((((((((...(((.....(((((....)))))....))).))))))...))))).	1.000 -12.40

rat

chromosome:14:22721527:22721586:1

intergenic

block483964 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	19	-3	3arm_loop	13	nd	0.32	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------UUCUUGU------------------------------	1	novel
		len	cloning frequencies
			T3S1
	-------------------------------------------CTTCTTGTTCAGGATGTGC-------------------	19	1
rat	cagttctgatgcacaccgcagatgtagcatccacagttgagatCTTCTTGTTCAGGATGTGCaggtgtgcatctcagctgc
	*********************************************************************************
	-------------------------------------------------------------------------------------------	ENSRNOT00000060354 ENSRNOG00000039384
rat	(((((..((((((((((.....((((.(((((.....((((.....))))....)))))))))))))))))))..))))).	0.980 -32.50

rat

chromosome:15:29736395:29736475:1

Opposite_strand|Intronic_non-coding|ENSRNOT00000060354|ENSRNOG00000039384 ## ENSRNOG00000039384|protein_coding||

block844078 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.005	no	no	0.33/0.37	19/21/0.50	0.0	1.0	2	0	1	0	34	-5	5arm_loop_3arm	26	nd	0.33	4	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------CGUUUUG------------------------------------------------------------	2	novel
		len	cloning frequencies
			T5S2
	----------------------------------CCGTTTTGAGCTGAATTATTA-----------------------------------------------	21	1
	----------------------------------CCGTTTTGAGCTGAATTAT-------------------------------------------------	19	1
rat	cactgtccaaggcttttgaggactctctggggagCCGTTTTGAGCTGAATTATTAtagggctcaaaacctttccttttccacctatcgaggttggacaatgc
	******************************************************************************************************
	----------------------------------------------------------------------------------------------------------------	ENSRNOT00000049496 ENSRNOG00000031160 LOC685793
	----------------------------------------------------------------------------------------------------------------	ENSRNOT00000042408 ENSRNOG00000031160 LOC685793
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000059958 ENSRNOG00000030545 LOC685793
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000049483 ENSRNOG00000030545 LOC685793
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000039913 ENSRNOG00000030545 LOC685793
rat	((.((((((..(((((..(((.......((..((..((((((((((..((....))..))))))))))))..)).......)))...))))))))))).)).	0.760 -33.54

rat

chromosome:1:50094094:50094195:-1

block846001 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.010	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	28	-1	3arm	60	nd	0.47	5	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------GUGGGAG---------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	-------------------------------------------TGTGGGAGCTATTGGCCTA----------------------------	19	1
rat	ccctggaggagtccatgagcccatgaacctctagtccccacccTGTGGGAGCTATTGGCCTAagggggagctggagtccatctgaaggga
	******************************************************************************************
rat	((((((((((.((((....(((.....((..(((..(((((...)))))..)))..)).......)))...)))).))).)))..)))).	0.950 -37.40

rat

chromosome:1:50888546:50888635:-1

intergenic

block846276 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.005	no	no	0.33/0.37	19/21/0.50	0.0	1.0	2	0	1	0	7	-5	5arm_loop_3arm	26	nd	0.33	4	2	1	na	na

		reads	miRBase family seed
seed	--------CGUUUUG---------------------------------------	2	novel
		len	cloning frequencies
			T5S2
	-------CCGTTTTGAGCTGAATTAT----------------------------	19	1
	-------CCGTTTTGAGCTGAATTATTA--------------------------	21	1
rat	tggggagCCGTTTTGAGCTGAATTATTAtagagctcaaaacctttactcttcca
	******************************************************
rat	.((((((..((((((((((..((....))..)))))))))).....))))))..	1.000 -16.90

rat

chromosome:1:51041518:51041571:-1

intergenic

Page 30644

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Page 31204

miR-Intess™

block881410 [novel_5varHIGH_nonpairedHIGH_bulgeHIGH]

block1696241 [novel_5varHIGH_nonpairedHIGH_bulgeHIGH]

block841558 [novel_5varHIGH_nonpairedHIGH_bulgeHIGH]

block870743 [novel_5varHIGH_nonpairedHIGH_bulgeHIGH]

block306025 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

block389144 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

block483964 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

block844078 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

block846001 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

block846276 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]