miR-Intess: classification

other hairpins

novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (35 loci)

block1555026 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.61/0.61	18/18/0.00	0.0	0.0	2	0	1	0	35	-3	5arm_loop	29	nd	0.39	4	2	1	na	na

		reads	miRBase family seed
seed	------------------------------------CCAAUCC---------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			T3S1
	-----------------------------------GCCAATCCCTGACCCTGA-----------------------------------------------------------------	18	2
rat	aggtctgtaccagagaagactaaatatgggcctggGCCAATCCCTGACCCTGAagaggcctgggtccagagaagaagaaatatgggtctgggcctatccctagtctttgaagagacct
	**********************************************************************************************************************
rat	((((((........((((((((...(((((((..((((..((.(((((((...........))))).)).))............))))..)))))))...))))))))....))))))	0.920 -44.84

rat

chromosome:4:77659658:77659775:-1

intergenic

block2383123 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.33/0.33	18/18/0.00	0.0	0.0	1	0	1	0	20	-4	5arm_loop	12	nd	0.33	5	1	1	na	na

		reads	miRBase family seed
seed	---------------------AUGGAGU----------------------------------------------------	1	novel
		len	cloning frequencies
			T2S1
	--------------------GATGGAGTATTTGGAAAA------------------------------------------	18	1
rat	acctgaggagagaataccctGATGGAGTATTTGGAAAAtcccaaatattacattcctagaacaaaaatgatcttctctgg
	********************************************************************************
rat	.((.(((((((..((...((((((.(((((((((......))))))))).))))...)).......))..))))))).))	0.500 -19.60

rat

chromosome:8:20038361:20038440:1

intergenic

block2400423 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.009	no	no	0.68/0.68	19/19/0.00	0.0	0.0	1	0	1	0	18	-4	5arm_loop	18	nd	0.58	5	1	1	na	na

		reads	miRBase family seed
seed	-------------------UCCCCGG--------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1
	------------------CTCCCCGGCCTTTGGTCCT---------------------------------------	19	1
rat	cctggcctttggtcctccCTCCCCGGCCTTTGGTCCTccctcctcggcctttggtcctccctccccggcctttggt
	****************************************************************************
	--------------------------------------------------------------------------------------	ENSRNOT00000059765 ENSRNOG00000008771 RGD1311293
	--------------------------------------------------------------------------------------	ENSRNOT00000011620 ENSRNOG00000008771 RGD1311293
rat	((.((((...((........((..((((...((........))..))))...))........))..))))...)).	0.450 -20.59

rat

chromosome:8:47232899:47232974:1

Opposite_strand|Intronic_coding|ENSRNOT00000011620|ENSRNOG00000008771 ## ENSRNOG00000008771|protein_coding|RGD1311293|NLR family member X1. [Source:UniProtKB/Swiss-Prot;Acc:Q5FVQ8] ## {Repeats: dust 47233169 47233188 0 class=dust,trf 301 320 0 class=trf,trf 1 13 0 class=trf}

block400067 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	41	-4	3arm_loop	19	nd	0.44	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------AAGCAGU---------------------------------------------------	1	novel
		len	cloning frequencies
			T1S2
	----------------------------------------------------AAAGCAGTGGCAGAAGGA-----------------------------------------	18	1
rat	gcccgcccgcgcccctccttaggctccttctgctcccctcccccgccctgggAAAGCAGTGGCAGAAGGAggcaatgcaaagtgagcccgttgggtaggggaagggagggt
	***************************************************************************************************************
rat	((((.(((...((((((((..((((((((.(((...(((((...((((((......))).)))....)))))....)))))).)))))....))).)))))..))).))))	1.000 -57.30

rat

chromosome:14:49220760:49220870:1

intergenic

block400074 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	41	-4	3arm_loop	19	nd	0.44	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------AAGCAGU---------------------------------------------------	1	novel
		len	cloning frequencies
			T1S2
	----------------------------------------------------AAAGCAGTGGCAGAAGGA-----------------------------------------	18	1
rat	gcccgcccgcgcccctccttaggctccttctgctcccctcccccgccctgggAAAGCAGTGGCAGAAGGAggcaatgcaaagtgagcccgttgggtaggggaagggagggt
	***************************************************************************************************************
rat	((((.(((...((((((((..((((((((.(((...(((((...((((((......))).)))....)))))....)))))).)))))....))).)))))..))).))))	1.000 -57.30

rat

chromosome:14:49223126:49223236:1

intergenic

block1240004 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.009	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	12	-3	5arm_loop	12	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	-------------ACAUGGC-----------------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	------------AACATGGCATCCAGCCTGA------------------------------------	19	1
rat	tctactgcctggAACATGGCATCCAGCCTGAtggccggatgccaagcgacaagaccactaggggaga
	*******************************************************************
rat	(((.((.(((((....((((((((.(((....))).)))))))).............))))))))))	0.540 -24.53

rat

chromosome:2:9721864:9721930:1

intergenic

block1087164 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.56/0.56	18/18/0.00	0.0	0.0	2	0	1	0	33	-4	5arm_loop	14	nd	0.50	5	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------CACUGUC------------------------	1	novel
seed	----------------------------------CACUGUC-----------------------------------------------------------	1	novel
		len	cloning frequencies
			T4S2
	--------------------------------------------------------------------ACACTGTCCACCTGACAG--------------	18	1
	---------------------------------ACACTGTCCACCTGACAG-------------------------------------------------	18	1
rat	actgtccatctgacagagcaggccgacagatacACACTGTCCACCTGACAGagcaggccgacagatacACACTGTCCACCTGACAGagcagaccgacaga
	****************************************************************************************************
	--------------------------------------------------------------------------------------------------------------	ENSRNOT00000000365 ENSRNOG00000000327 Hace1_predicted
rat	.(((((..((((......((((..(((((.......(((((..((((......))))..))))).......)))))..))))......))))..))))).	0.990 -37.54

rat

chromosome:20:49868622:49868721:-1

Opposite_strand|Intronic_coding|ENSRNOT00000000365|ENSRNOG00000000327 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000000362|ENSRNOG00000000327 ## ENSRNOG00000000327|protein_coding|Hace1_predicted|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1 [Source:RefSeq_peptide;Acc:NP_001102009] ## {Repeats: trf 66 84 0 class=trf}

block1087165 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.56/0.56	18/18/0.00	0.0	0.0	2	0	1	0	43	-4	5arm_loop	14	nd	0.50	5	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------CACUGUC----------------------------------	1	novel
seed	--------------------------------------------CACUGUC---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T4S2
	------------------------------------------------------------------------------ACACTGTCCACCTGACAG------------------------	18	1
	-------------------------------------------ACACTGTCCACCTGACAG-----------------------------------------------------------	18	1
rat	gcagatacacactgtccatctgacagagcaggccgacagatacACACTGTCCACCTGACAGagcaggccgacagatacACACTGTCCACCTGACAGagcagaccgacagatacacactgt
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000000365 ENSRNOG00000000327 Hace1_predicted
rat	((((.......(((((..((((......((((..(((((.......(((((..((((......))))..))))).......)))))..))))......))))..))))).......))))	0.980 -39.28

rat

chromosome:20:49868612:49868731:-1

block1087176 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.004	no	no	0.56/0.56	18/18/0.00	0.0	0.0	2	0	1	0	31	-4	5arm_loop	14	nd	0.50	5	2	1	na	na

		reads	miRBase family seed
seed	--------------------------------CACUGUC----------------------------------------------------------	1	novel
seed	--------------------------------------------------------------------CACUGUC----------------------	1	novel
		len	cloning frequencies
			T4S2
	-------------------------------ACACTGTCCACCTGACAG------------------------------------------------	18	1
	-------------------------------------------------------------------ACACTGTCCACCTGACAG------------	18	1
rat	tgtccacctgacagagcaggtcagcagatacACACTGTCCACCTGACAGagcaggccgacagaatacACACTGTCCACCTGACAGagcaggtcagca
	*************************************************************************************************
	-----------------------------------------------------------------------------------------------------------	ENSRNOT00000000365 ENSRNOG00000000327 Hace1_predicted
rat	.((..(((((......(((((..((((.......(((((..((((......))))..)))))........))))..)))))......)))))..)).	0.920 -32.66

rat

chromosome:20:49869010:49869106:-1

novel_lenNOK_gcHIGH_nonpairedHIGH_bulgeHIGH (35 loci)

block86667 [novel_lenNOK_gcHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.717	no	no	0.95/0.95	19/19/0.00	0.0	0.0	1	0	1	0	17	4	3arm	2	nd	0.47	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------CCACCCC----------------------------	1	novel
		len	cloning frequencies
			T1S1
	-----------------------------------------------CCCACCCCCCGCCCCCCGC-----------------	19	1
rat	ggacaggagatggagttgggagactggtgtgtgtaggctgattgcccCCCACCCCCCGCCCCCCGCcaagaagtctcagtctc
	***********************************************************************************
rat	((((..(((((((....(((.....((.(((....(((.....)))...)))))....)))....))).....)))).)))).	0.980 -23.10

rat

chromosome:10:72817823:72817905:1

intergenic ## {Repeats: dust 72817867 72817884 0 class=dust,trf 2 21 0 class=trf}

Page 30647

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Page 31204

miR-Intess™

block1555026 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

block2383123 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

block2400423 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

block400067 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

block400074 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

block1240004 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

block1087164 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

block1087165 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

block1087176 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

block86667 [novel_lenNOK_gcHIGH_nonpairedHIGH_bulgeHIGH]