miR-Intess: classification

other hairpins

novel_lenNOK_gcHIGH_nonpairedHIGH_bulgeHIGH (35 loci)

block2462654 [novel_lenNOK_gcHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.798	no	no	0.95/0.95	19/19/0.00	0.0	0.0	1	0	1	0	26	7	5arm	1	nd	0.53	5	1	1	na	na

		reads	miRBase family seed
seed	---------------------------CCCCCCG----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	--------------------------CCCCCCCGCCCCCGGGCCT-----------------------------------------------------------------	19	1
rat	gctcccctcccccgcgccccccgcacCCCCCCCGCCCCCGGGCCTgagctctgaatggagagcgactgggctgctggtatgcggaggtcggcgagaggaaatcgaggagt
	**************************************************************************************************************
rat	(((((((((.....(((((((((((..((....((.(((((......(((((......)))))..)))))..)).))..))))).))..)))).)))).......)))))	0.540 -44.31

rat

chromosome:8:125962547:125962656:1

intergenic ## {Repeats: dust 125962549 125962562 0 class=dust,trf 1 14 0 class=trf,GC_rich 18 36 1 class=Low_complexity,GC_rich 1 36 1 class=Low_complexity} ## {SimpF: oe = 1.03 0 CpG}

block2577986 [novel_lenNOK_gcHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.031	no	no	0.91/0.94	18/22/0.50	0.5	1.5	2	0	2	0	6	16	3arm	3	nd	0.44	5	2	2	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------ACCGCGG--------------------	1	novel
seed	--------------------------------------------------------------CCGCGGG-------------------	1	novel
		len	cloning frequencies
			T1S2	T3S2
	------------------------------------------------------------TACCGCGGGGGGGGGGGGGGGG------	22	1	-
	-------------------------------------------------------------ACCGCGGGGGGGGGGGGG---------	18	-	1
rat	ttctgacataatctcattgtggtgaaactgctgagcacggggaatcgaggctcgacagaaTACCGCGGGGGGGGGGGGGGGGaggaaa
	****************************************************************************************
	--------------------------------------------------------------------------------------------------	ENSRNOT00000016194 ENSRNOG00000012045 NP_001100368.1
rat	((((.......((((.((((((((...(((.(((((.(((....)))..))))).)))..))))))))...))))........)))).	1.000 -26.76

rat

chromosome:9:23779382:23779469:1

Opposite_strand|Intronic_coding|ENSRNOT00000016194|ENSRNOG00000012045 ## ENSRNOG00000012045|protein_coding|NP_001100368.1|brain-specific angiogenesis inhibitor 3 [Source:RefSeq_peptide;Acc:NP_001100368] ## {Repeats: dust 23779448 23779463 0 class=dust}

block2708489 [novel_lenNOK_gcHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.345	no	no	0.94/0.94	18/18/0.00	0.0	0.0	1	0	1	0	16	10	3arm	2	nd	0.56	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------CCCUCGG--------------------------	1	novel
		len	cloning frequencies
			T3S2
	--------------------------------------------------------------CCCCTCGGCCCCGCCCCC----------------	18	1
rat	cggccgagccccgccaacagaggacaagcccaggagtccggcccgacaaggctcgggccccgCCCCTCGGCCCCGCCCCCgcctggcggccgcgcc
	************************************************************************************************
rat	.(((((.(((..((((.....((....(((.(((.((..(((((((......)))))))..)).))).)))....))......))))))))).)))	0.880 -43.30

rat

chromosome:X:56423137:56423232:-1

intergenic ## {Repeats: GC_rich 17 35 -1 class=Low_complexity,GC_rich 1 43 -1 class=Low_complexity}

block2861609 [novel_lenNOK_gcHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.619	no	no	0.94/0.94	18/18/0.00	0.0	0.0	1	0	1	0	7	33	5arm	2	nd	0.50	4	1	1	na	na

		reads	miRBase family seed
seed	--------CCCGCGC---------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T4S2
	-------CCCCGCGCCCCCCCCCCA-----------------------------------------------------------------------------------------------	18	1
rat	gttccccCCCCGCGCCCCCCCCCCAgtgtgctggaaagcaagtcgacctgatgggcagcacactaactgttcgcagtccaccgccacagtcgcgccctgggagctgcgcgagcgggtggc
	************************************************************************************************************************
rat	((..(((...(((((....(((...((((((((....((..((.((.(((.((..(((........)))..))))))).)).))..))).)))))...)))....)))))...)))..))	0.920 -43.10

rat

chromosome:X:146517157:146517276:-1

intergenic ## {Repeats: GC_rich 1 21 -1 class=Low_complexity,dust 146517253 146517270 0 class=dust,GC_rich 1 18 -1 class=Low_complexity}

novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (34 loci)

block205411 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.222	no	no	0.28/0.29	18/24/0.67	1.7	0.3	3	0	2	0	23	-20	3arm_loop	37	nd	0.39	4	3	2	na	na

		reads	miRBase family seed
seed	--------------------------------UGUACAA--------------------------------------	2	novel
seed	-------------------------------------AAAGCAA---------------------------------	1	novel
		len	cloning frequencies
			T3S2	T5S1
	-------------------------------GTGTACAAAGCAAAAAACAATACA----------------------	24	2	-
	------------------------------------CAAAGCAAAAAACAATAC-----------------------	18	-	1
rat	tgagttctacttagacaagaggtgtgcttgtGTGTACAAAGCAAAAAACAATACAgtgactcctggaggtaaaccaa
	*****************************************************************************
rat	((.(((.(((((...((.(((.((((.((((.(((.....)))....))))))))....))).)).)))))))))).	0.720 -14.80

rat

chromosome:12:46711371:46711447:-1

intergenic

block490995 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.472	no	no	0.42/0.53	19/24/0.33	0.0 2.5	0.0 0.0	1 2	0 0	1 2	0 0	15 4	-1 5	3arm 3arm	14 14	nd nd	0.42 0.50	5 4	3	3	na	na

		reads	miRBase family seed
seed	-----------------------------GCCCUAG--------------------------	1	novel
seed	-----------------------------------GAUCAGG--------------------	1	novel
seed	----------------------------------------GGAGAUC---------------	1	novel
		len	cloning frequencies
			T1S1	T3S2	T5S2
	----------------------------------AGATCAGGAGATCATTGAGGTAGA----	24	-	1	-
	---------------------------------------AGGAGATCATTGAGGTAGA----	19	-	-	1
	----------------------------AGCCCTAGATCAGGAGATC---------------	19	1	-	-
rat	ggagagataactatgttcctgaggtctcAGCCCTAGATCAGGAGATCATTGAGGTAGAtccc
	**************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000059064 ENSRNOG00000038690
rat	(((...((....(((.(((((((((....))).....))))))...)))....))...))).	0.970 -13.50

rat

chromosome:15:45024461:45024522:1

Same_strand|Intronic_coding|ENSRNOT00000059064|ENSRNOG00000038690 ## ENSRNOG00000038690|protein_coding||

block746657 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.554	no	no	0.28/0.29	18/24/0.67	1.7	0.3	3	0	2	0	14	-23	3arm	37	nd	0.50	5	3	2	na	na

		reads	miRBase family seed
seed	-------------------------UGUACAA-----------------------------	2	novel
seed	------------------------------AAAGCAA------------------------	1	novel
		len	cloning frequencies
			T3S2	T5S1
	------------------------GTGTACAAAGCAAAAAACAATACA-------------	24	2	-
	-----------------------------CAAAGCAAAAAACAATAC--------------	18	-	1
rat	cttaggcaagaggtgtgtgcttatGTGTACAAAGCAAAAAACAATACAgtgactcctggag
	*************************************************************
rat	.(((((((.....(((.(((((.((....)))))))....)))......))...)))))..	0.860 -9.70

rat

chromosome:18:49676122:49676182:1

intergenic

block842840 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.230	no	no	0.52/0.58	19/23/0.67	1.3	4.0	3	0	2	0	11	-1	3arm	22	nd	0.35	4	3	2	na	na

		reads	miRBase family seed
seed	-----------------------------------------CCACAUU--------------------------	2	novel
seed	---------------------------------------CUCCACA----------------------------	1	novel
		len	cloning frequencies
			T1S1	T5S1
	----------------------------------------TCCACATTCTCAGGGCCTCCAAA-----------	23	1	1
	--------------------------------------ACTCCACATTCTCAGGGCC-----------------	19	1	-
rat	aggaccaccagtgtggtagaaactctgttgtcaagtcaACTCCACATTCTCAGGGCCTCCAAAttgcagggcct
	**************************************************************************
rat	(((.((..((((.(((.((...(((((.(((..((....))..)))....))))).))))).))))...)))))	0.430 -18.00

rat

chromosome:1:48998483:48998556:-1

intergenic

block843597 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.033	no	no	0.59/0.61	18/22/0.50	2.0	0.0	2	0	2	0	14	-5	3arm	25	nd	0.33	5	2	2	na	na

		reads	miRBase family seed
seed	---------------------------------------GCCUCUU------------------------	1	novel
seed	-----------------------------------AGCUGCC----------------------------	1	miR-22
		len	cloning frequencies
			T2S1	T5S1
	--------------------------------------TGCCTCTTCTGACACCCC--------------	18	1	-
	----------------------------------AAGCTGCCTCTTCTGACACCCC--------------	22	-	1
rat	gcccatagattggatttactgttattaagaggctAAGCTGCCTCTTCTGACACCCCacagtgtgcagggt
	**********************************************************************
rat	((((.((.((((.......(((((..(((((((......))))))).))))).....)))).))..))))	0.870 -21.60

rat

chromosome:1:49869255:49869324:-1

intergenic

block847616 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.293	no	no	0.50/0.53	19/22/0.67	1.5 0.0	3.0 0.0	2 1	0 0	2 1	0 0	15 8	-16 5	3arm_loop 3arm	26 26	nd nd	0.53 0.55	6 4	3	2	na	na

		reads	miRBase family seed
seed	----------------------------------------CCAUUGU--------------------	1	novel
seed	-------------------------------GCAGGAU-----------------------------	1	novel
seed	----------------------------CCUGCAG--------------------------------	1	novel
		len	cloning frequencies
			T1S1	T5S1
	---------------------------TCCTGCAGGATCTCCATTG---------------------	19	-	1
	------------------------------TGCAGGATCTCCATTGTCTCAG---------------	22	1	-
	---------------------------------------TCCATTGTCTCAGGGCATTC--------	20	1	-
rat	gcaccttcactgtccaaacaaaccaacTCCTGCAGGATCTCCATTGTCTCAGGGCATTCactaatgc
	*******************************************************************
	-----------------------------------------------------------------------------	ENSRNOT00000041486 ENSRNOG00000033456 LOC308198
rat	(((.......(((((..((((......(((....)))......))))....)))))........)))	0.840 -9.26

rat

chromosome:1:52393592:52393658:-1

Page 30651

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Page 31204

miR-Intess™

block2462654 [novel_lenNOK_gcHIGH_nonpairedHIGH_bulgeHIGH]

block2577986 [novel_lenNOK_gcHIGH_nonpairedHIGH_bulgeHIGH]

block2708489 [novel_lenNOK_gcHIGH_nonpairedHIGH_bulgeHIGH]

block2861609 [novel_lenNOK_gcHIGH_nonpairedHIGH_bulgeHIGH]

block205411 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

block490995 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

block746657 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

block842840 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

block843597 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

block847616 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]