miR-Intess™

other hairpins

novel_lenNOK_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (34 loci)

block1848469 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.200

no

no

0.52/0.70

18/25/0.44

3.6

3.5

16

0

6

0

17

-20

3arm

1

nd

0.36

5

16

6

na

na

		reads	miRBase family seed
seed	-----------------------------------------------------------GAGCCAC----------------------------------	5	novel
seed	------------------------------------------------------GCCCUGA---------------------------------------	3	novel
seed	-----------------------------------------------------AGCCCUG----------------------------------------	2	miR-349
seed	--------------------------------------------------------CCUGAGC-------------------------------------	2	novel
seed	---------------------------------------------------------CUGAGCC------------------------------------	1	novel
seed	-------------------------------------------------------------GCCACAC--------------------------------	1	novel
seed	--------------------------------------------------GGAAGCC-------------------------------------------	1	novel
seed	-------------------------------------------------AGGAAGC--------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T3S2	T4S2	T5S1	T5S2
	-----------------------------------------------------AGCCCTGAGCCACACACAC----------------------------	19	-	-	-	-	2	1
	----------------------------------------------------------TGAGCCACACACACGCCA------------------------	18	1	-	-	-	1	-
	----------------------------------------------------AAGCCCTGAGCCACACACAC----------------------------	20	-	-	-	-	2	-
	-------------------------------------------------AGGAAGCCCTGAGCCACACACAC----------------------------	23	-	-	-	1	-	-
	----------------------------------------------------------TGAGCCACACACACGCCAAAAGAG------------------	24	-	-	-	-	1	-
	------------------------------------------------------------AGCCACACACACGCCAAAAGAG------------------	22	-	1	-	-	-	-
	------------------------------------------------GAGGAAGCCCTGAGCCACAC--------------------------------	20	1	-	-	-	-	-
	-------------------------------------------------------CCCTGAGCCACACACACGC--------------------------	19	-	1	-	-	-	-
	-------------------------------------------------------CCCTGAGCCACACACACGCC-------------------------	20	-	-	-	1	-	-
	----------------------------------------------------------TGAGCCACACACACGCCAAAAGAGA-----------------	25	-	-	-	-	1	-
	----------------------------------------------------------TGAGCCACACACACGCCAA-----------------------	19	-	-	1	-	-	-
	--------------------------------------------------------CCTGAGCCACACACACGCC-------------------------	19	-	-	-	1	-	-
rat	gtctgcacagaagataagcattttctgtgagtcgtgagtactggaggtGAGGAAGCCCTGAGCCACACACACGCCAAAAGAGAggtgccctggtgcaggc
	****************************************************************************************************
rat	((((((((...((....(((((((((......((((.((..(((.....(((....)))...))).)).)))).....)))))).))).)).))))))))	0.710 -29.50

rat

chromosome:5:79245040:79245139:1

intergenic

block1848531 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.111

no

no

0.50/0.59

19/25/0.44

3.3

2.0

21

0

5

0

22

-20

3arm_loop

1

nd

0.47

5

36

5

0

-25

		reads	miRBase family seed
seed	-------------------------GUUCCUU----------------------------------------	11	novel
seed	--------------------------------GCAUUGG---------------------------------	10	novel
seed	----------------------------CCUUGCA-------------------------------------	4	novel
seed	--------------------------UUCCUUG---------------------------------------	4	novel
seed	---------------------------UCCUUGC--------------------------------------	4	novel
seed	-----------------------GUGUUCC------------------------------------------	1	novel
seed	-----------CCUUGGG------------------------------------------------------	1	novel
seed	---------------GGGCAGC--------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T3S2	T4S1	T4S2	T5S1
	-------------------------------TGCATTGGCCACAGCAAAG----------------------	19	-	-	-	-	9
	------------------------TGTTCCTTGCATTGGCCAC-----------------------------	19	1	-	1	1	6
	--------------------------TTCCTTGCATTGGCCACAGCAAAG----------------------	24	-	1	-	-	3
	---------------------------TCCTTGCATTGGCCACAGCAAAG----------------------	23	-	-	-	-	3
	-------------------------GTTCCTTGCATTGGCCACAG---------------------------	20	-	-	-	-	2
	------------------------TGTTCCTTGCATTGGCCACAG---------------------------	21	-	-	-	-	2
	-------------------------GTTCCTTGCATTGGCCACAGCAAAG----------------------	25	-	-	-	-	2
	----------TCCTTGGGCAGCTGTGTTCCTT----------------------------------------	22	1	-	-	-	-
	-------------------------------TGCATTGGCCACAGCAAAGCCC-------------------	22	-	-	-	-	1
	----------------------TGTGTTCCTTGCATTGGCCACAG---------------------------	23	-	-	-	-	1
	---------------------------TCCTTGCATTGGCCACAGCAAA-----------------------	22	1	-	-	-	-
	--------------TGGGCAGCTGTGTTCCTTGCATTG----------------------------------	24	-	-	-	-	1
rat	cttgtgtctatccttgggcagctgTGTTCCTTGCATTGGCCACAGCAAAGccctgtctgtggttctcagaag
	************************************************************************
rat	(((.((.((((....((((.((((((..((.......)).))))))...)))).....))))....)).)))	0.900 -21.60

rat

chromosome:5:79247481:79247552:1

intergenic

novel_lenNOK_multiarm_DicerNOK_mirtron (34 loci)

sblock4767 [novel_lenNOK_multiarm_DicerNOK_mirtron]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.600

no

no

0.42/0.79

18/23/0.25

0.0 0.0 0.0 0.0

0.0 1.2 0.0 0.0

1 4 1 2

0 0 0 0

1 3 1 1

0 0 0 0

26 14 7 0

2 7 19 25

5arm 3arm 3arm 3arm

1 1 1 1

54 14 7 0

0.37 0.30 0.28 0.22

3 3 2 1

8

5

0

0

		reads	miRBase family seed
seed	---------------------------------------------------------------GUUCGUG-----------------------------	4	novel
seed	---------------------------------------------------------------------------------CAGCCGC-----------	2	novel
seed	---------------------------GACUCCU-----------------------------------------------------------------	1	novel
seed	---------------------------------------------------------------------------CAGUGAC-----------------	1	novel
		len	cloning frequencies
			T1S1	T2S1	T2S2	T3S1	T5S1
	--------------------------------------------------------------------------------ACAGCCGCCTGCGGAGCGC	19	-	2	-	-	-
	--------------------------------------------------------------AGTTCGTGGATTGCAGTGA------------------	19	-	-	1	-	1
	--------------------------------------------------------------------------GCAGTGACAGCCGCCTGC-------	18	-	-	-	1	-
	--------------------------------------------------------------AGTTCGTGGATTGCAGTGAC-----------------	20	-	1	-	-	-
	--------------------------CGACTCCTTAAATAGCATC------------------------------------------------------	19	1	-	-	-	-
	--------------------------------------------------------------AGTTCGTGGATTGCAGTGACAGC--------------	23	-	-	1	-	-
rat	cgcagccaacagagcagctgcggccgCGACTCCTTAAATAGCATCgcaaccctgcgcggggcAGTTCGTGGATTGCAGTGACAGCCGCCTGCGGAGCGC
	***************************************************************************************************
	..................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++>>>>>	ENSRNOT00000033160 ENSRNOG00000022040
rat	(((..((..(((.((.((((..((.((((.(((...(((.((..(((........)))..)).)))...))))))).))..)))).))))).)).))).	0.710 -34.30

rat

chromosome:16:49103311:49103409:-1

Same_strand|Exonic_non-coding|ENSRNOT00000033160|ENSRNOG00000022040 ## Same_strand|Boundary_non-coding|ENSRNOT00000033160|ENSRNOG00000022040 ## intergenic ## ENSRNOG00000022040|pseudogene|| ## {SimpF: 1 Eponine}

sblock10154 [novel_lenNOK_multiarm_DicerNOK_mirtron]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.210

no

no

0.47/0.59

19/22/0.50

0.0 0.0

0.0 0.0

2 2

0 0

1 1

0 0

23 30

6 6

5arm 3arm

1 1

37 2

0.27 0.32

3 3

4

2

1

-2

		reads	miRBase family seed
seed	------------------------CGCAAGG-------------------------------------------------------------------------------	2	novel
seed	--------------------------------------------------------------UGGUGGU-----------------------------------------	2	novel
		len	cloning frequencies
			T1S1	T3S1
	-----------------------TCGCAAGGCCGTAGCCTCTTTG-----------------------------------------------------------------	22	-	2
	-------------------------------------------------------------ATGGTGGTTTCTGTCTTGC------------------------------	19	2	-
rat	ggtggatcaaagctgtggcaccaTCGCAAGGCCGTAGCCTCTTTGccagactcctgtccacATGGTGGTTTCTGTCTTGCaggacctggtgctggagaaactgaagagcc
	**************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000005908 ENSRNOG00000004482 RGD1307429_predicted
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000006054 ENSRNOG00000004482 RGD1307429_predicted
rat	(((...(((...((.(((((((((((((((((...((((.((.((...(((....)))..)).)).))))...))))))).))...)))))))).))....)))...)))	0.880 -37.40

rat

chromosome:6:125208956:125209065:-1

Same_strand|Intronic_coding|ENSRNOT00000006054|ENSRNOG00000004482 ## ENSRNOG00000004482|protein_coding|RGD1307429_predicted| ## {Repeats: trf 1 10 0 class=trf}

sblock10175 [novel_lenNOK_multiarm_DicerNOK_mirtron]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.073

no

no

0.43/0.52

18/25/0.60

0.3 0.5

1.0 1.0

3 2

0 0

3 1

0 0

31 30

1 3

5arm 3arm

1 1

35 1

0.24 0.22

3 2

5

3

2

-1

		reads	miRBase family seed
seed	--------------------------------UGCUAAU---------------------------------------------------------------------------------	2	novel
seed	---------------------------------GCUAAUG--------------------------------------------------------------------------------	1	novel
seed	-----------------------------------------------------------------------GCCUGUU------------------------------------------	1	novel
seed	----------------------------------------------------------------------AGCCUGU-------------------------------------------	1	novel
		len	cloning frequencies
			T4S2	T5S1	T5S2
	----------------------------------------------------------------------AGCCTGTTGCTTCATTTG--------------------------------	18	-	1	-
	---------------------------------------------------------------------AAGCCTGTTGCTTCATTTGCA------------------------------	21	-	1	-
	-------------------------------ATGCTAATGAAGCCACTGCCAG-------------------------------------------------------------------	22	1	-	-
	--------------------------------TGCTAATGAAGCCACTGCCAG-------------------------------------------------------------------	21	-	1	-
	-------------------------------ATGCTAATGAAGCCACTGCCAGTTC----------------------------------------------------------------	25	-	-	1
rat	ctttaaaaacctctcatcccagaaagtctggATGCTAATGAAGCCACTGCCAGTTCtcagtagataagaAAGCCTGTTGCTTCATTTGCAgctgcttttctgaccgaggctctctgaaga
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000039059 ENSRNOG00000009675 Cdc42bpb
rat	(((((....((((......((((((((..((.(((.((((((((.((.((...((((.........)))).))..)).)))))))).))).))))))).)))...)))).....))))).	0.530 -30.50

rat

chromosome:6:136083313:136083432:-1

Same_strand|Intronic_coding|ENSRNOT00000039059|ENSRNOG00000009675 ## ENSRNOG00000009675|protein_coding|Cdc42bpb|Serine/threonine-protein kinase MRCK beta (EC 2.7.11.1) (CDC42-binding protein kinase beta) (Myotonic dystrophy kinase-related CDC42-binding kinase beta) (Myotonic dystrophy protein kinase-like beta) (MRCK beta) (DMPK-like beta). [Source:UniProtKB/Swiss-Prot;Acc:Q7TT49]

sblock10843 [novel_lenNOK_multiarm_DicerNOK_mirtron]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.470

no

no

0.21/0.26

19/23/0.50

0.0 0.0

0.0 0.0

1 1

0 0

1 1

0 0

13 6

22 19

5arm 3arm

1 1

73 2

0.26 0.35

2 4

2

2

3

7

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------GUACUGA---------------------	1	novel
seed	--------------GAAGACA----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S2	T4S2
	--------------------------------------------------------------------------------AGTACTGACATTTTCATTTTACT------	23	1	-
	-------------TGAAGACATTTTTATTTTG-----------------------------------------------------------------------------	19	-	1
rat	aaaatttattcagTGAAGACATTTTTATTTTGtgatacattttgtaaccatcagccttcatctgagctttatgatgttaaAGTACTGACATTTTCATTTTACTaggttt
	*************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>	ENSRNOT00000012775 ENSRNOG00000008639 Pabpc1
rat	.(((((((...((((((((..((..(((((((....(((((..((((...((((.......))))...))))))))))))))))..))..))))))))....)))))))	0.450 -14.90

rat

chromosome:7:72123023:72123131:-1

Same_strand|Intronic_coding|ENSRNOT00000012775|ENSRNOG00000008639 ## ENSRNOG00000008639|protein_coding|Pabpc1|Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1). [Source:UniProtKB/Swiss-Prot;Acc:Q9EPH8]

sblock10856 [novel_lenNOK_multiarm_DicerNOK_mirtron]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.596

no

no

0.65/0.80

18/23/0.60

0.0 0.0 0.5

0.0 2.5 0.5

1 2 2

0 0 0

1 2 2

0 0 0

31 6 0

4 23 32

5arm 3arm 3arm

1 1 1

59 1 4

0.30 0.17 0.22

2 1 3

5

3

18

21

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------------CCUCCCU---------------------	2	novel
seed	--------------------------------GGACGCG----------------------------------------------------------------------------	1	novel
seed	------------------------------------------------------------------------------------------------CUCGGUG------------	1	novel
seed	-------------------------------------------------------------------------------------------------UCGGUGC-----------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1
	------------------------------------------------------------------------------------------------CTCGGTGCTCACAGGTGC-	18	1	-	-
	-----------------------------------------------------------------------------------------------GCTCGGTGCTCACAGGTGCC	20	-	-	1
	--------------------------------------------------------------------------------------TCCTCCCTCGCTCGGTGC-----------	18	-	1	-
	-------------------------------GGGACGCGGCGAACCCGCTG----------------------------------------------------------------	20	-	1	-
	--------------------------------------------------------------------------------------TCCTCCCTCGCTCGGTGCTCACA------	23	1	-	-
rat	gcgccctcggagcggagcgcgaccgcgggcgGGGACGCGGCGAACCCGCTGctgccgctgcacgcagcctcggactcagtgctgtcTCCTCCCTCGCTCGGTGCTCACAGGTGCC
	*******************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>	ENSRNOT00000005584 ENSRNOG00000004200 RGD1564335_predicted
rat	(((((....((((...((.(((.((.(((.(((((((((..((..(((..(((((........)))))..)))..))..))).)))))).))).)).)))))))))...))))).	0.810 -53.40

rat

chromosome:7:80632576:80632690:-1

Same_strand|Boundary_coding|ENSRNOT00000005584|ENSRNOG00000004200 ## Same_strand|Intronic_coding|ENSRNOT00000005584|ENSRNOG00000004200 ## Same_strand|Boundary_non-coding|ENSRNOT00000057137|ENSRNOG00000004200 ## ENSRNOG00000004200|protein_coding|RGD1564335_predicted| ## {Repeats: dust 80632656 80632660 0 class=dust,trf 1 3 0 class=trf}

sblock10945 [novel_lenNOK_multiarm_DicerNOK_mirtron]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.015

no

no

0.50/0.58

18/21/0.50

0.0 1.0

1.0 0.0

2 2

0 0

1 2

0 0

28 22

2 13

5arm 3arm

2 6

44 1

0.14 0.33

1 6

4

2

10

9

		reads	miRBase family seed
seed	-----------------------------AGGGAAG------------------------------------------------------------------------------	2	novel
seed	---------------------------------------------------------------------------UUUCCUU--------------------------------	1	novel
seed	-------------------------------------------------------------------------GCUUUCC----------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2
	--------------------------------------------------------------------------CTTTCCTTCTTTCCCCCA----------------------	18	1	-
	----------------------------TAGGGAAGGGACAGAGCTCAG-----------------------------------------------------------------	21	1	-
	------------------------------------------------------------------------TGCTTTCCTTCTTTCCCCCA----------------------	20	-	1
	----------------------------TAGGGAAGGGACAGAGCTC-------------------------------------------------------------------	19	1	-
rat	tcaaattgatctggagggtcctgggttcTAGGGAAGGGACAGAGCTCAGgtggaagtggaccttagcccctgTGCTTTCCTTCTTTCCCCCAggcaggaaggatcattctgtga
	******************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000009764 ENSRNOG00000007334 Ly6h_predicted
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000056554 ENSRNOG00000007334 Ly6h_predicted
rat	(((...((((((.......((((((....((((((((.((((.(((.((((........)))).)))..)))).))))))))......))))))......)))))).....)))	0.990 -42.42

rat

chromosome:7:113511007:113511120:-1

Same_strand|Intronic_coding|ENSRNOT00000009764|ENSRNOG00000007334 ## ENSRNOG00000007334|protein_coding|Ly6h_predicted|

sblock11009 [novel_lenNOK_multiarm_DicerNOK_mirtron]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.011

no

no

0.63/0.74

19/22/0.44

0.5 0.0

1.8 0.6

4 5

0 0

3 2

0 0

19 18

7 9

5arm 3arm

1 1

44 2

0.19 0.32

3 4

9

3

2

0

		reads	miRBase family seed
seed	---------------------------------------------------------------CACCCAC--------------------------------	5	novel
seed	--------------------CUGGCAU---------------------------------------------------------------------------	3	novel
seed	----------------------GGCAUAG-------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T3S1
	--------------------------------------------------------------CCACCCACGCCCCTTTGCC---------------------	19	1	3	-
	--------------------------------------------------------------CCACCCACGCCCCTTTGCCTGC------------------	22	-	1	-
	-------------------TCTGGCATAGGGGTGTCCCGG--------------------------------------------------------------	21	-	-	1
	-------------------TCTGGCATAGGGGTGTCCC----------------------------------------------------------------	19	1	-	-
	---------------------TGGCATAGGGGTGTCCCGGGA------------------------------------------------------------	21	-	1	-
	-------------------TCTGGCATAGGGGTGTCCCG---------------------------------------------------------------	20	1	-	-
rat	ctgacggagctcagggttaTCTGGCATAGGGGTGTCCCGGGAccgcgggaagtcttgaggtcCCACCCACGCCCCTTTGCCTGCaggcccgggcccaggcgg
	******************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000004703 ENSRNOG00000016156 Nptxr
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000056152 ENSRNOG00000016156 Nptxr
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000022586 ENSRNOG00000016156 Nptxr
rat	(((..((.((((.(((((....((((.((((((((...((((((.((((....)))).))))))....)))))))).))))....)))))))))))...)))	1.000 -55.10

rat

chromosome:7:118065122:118065223:-1

Same_strand|Intronic_coding|ENSRNOT00000022586|ENSRNOG00000016156 ## Same_strand|Boundary_non-coding|ENSRNOT00000021841|ENSRNOG00000016156 ## ENSRNOG00000016156|protein_coding|Nptxr|Neuronal pentraxin receptor. [Source:UniProtKB/Swiss-Prot;Acc:O35764]

sblock11130 [novel_lenNOK_multiarm_DicerNOK_mirtron]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.502

no

no

0.65/0.68

18/23/0.67

0.0 0.0

0.0 2.5

1 2

0 0

1 2

0 0

6 11

7 8

5arm 3arm

1 1

40 1

0.27 0.39

2 3

3

2

1

0

		reads	miRBase family seed
seed	-----------------------------------------------CUGAGUA--------------------------	2	novel
seed	-------GUGCUGG------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T5S1
	----------------------------------------------CCTGAGTACCCCGTCCCT----------------	18	-	1
	----------------------------------------------CCTGAGTACCCCGTCCCTGCAGT-----------	23	1	-
	------TGTGCTGGGCTGGGCGCATGGT----------------------------------------------------	22	1	-
rat	ggggtgTGTGCTGGGCTGGGCGCATGGTctatgggcatcctgctgaCCTGAGTACCCCGTCCCTGCAGTtcggtgccctg
	********************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>	ENSRNOT00000025878 ENSRNOG00000018977 Ap3d1
rat	(((((...(((.((((.(((.((..((((..((((...))))..))))...)).))).))))..))).......))))).	0.880 -29.40

rat

chromosome:7:10499104:10499183:1

Same_strand|Boundary_coding|ENSRNOT00000025878|ENSRNOG00000018977 ## Same_strand|Intronic_coding|ENSRNOT00000025878|ENSRNOG00000018977 ## ENSRNOG00000018977|protein_coding|Ap3d1|Ap3d1 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q5RK16]

Back to summary page

other hairpins:

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