other hairpins
novel_lenNOK_multiarm_DicerNOK_mirtron (34 loci)
sblock8978 [novel_lenNOK_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.038 | no | no | 0.53/0.63 | 18/23/0.29 | 0.7 0.0 | 0.3 2.0 | 3 4 | 0 0 | 3 2 | 0 0 | 20 10 | 7 12 | 5arm 3arm | 1 1 | 50 2 | 0.21 0.26 | 2 3 | 7 | 4 | -1 | 1 |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------------------CUGGCUC------------------------- | 4 | novel | |||
| seed | ---------------------GGGGUUG---------------------------------------------------------------------- | 2 | novel | |||
| seed | -----------------------GGUUGAA-------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S2 | T5S2 | |||
| -----------------------------------------------------------------CCTGGCTCTGGTTCTGTCCTCTC---------- | 23 | - | 2 | - | - | |
| -----------------------------------------------------------------CCTGGCTCTGGTTCTGTCC-------------- | 19 | 2 | - | - | - | |
| --------------------TGGGGTTGAACCAAGTCCT----------------------------------------------------------- | 19 | 1 | - | 1 | - | |
| ----------------------GGGTTGAACCAAGTCCTG---------------------------------------------------------- | 18 | - | - | - | 1 | |
| rat | cctgtaacccggtggatattTGGGGTTGAACCAAGTCCTGgtgtggacctctatcccccacaacaCCTGGCTCTGGTTCTGTCCTCTCagggctacag | |||||
| ************************************************************************************************** | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>> | ENSRNOT00000021491 ENSRNOG00000015903 Add2 | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000021627 ENSRNOG00000015903 Add2 | |||||
| rat | .(((((.(((....((.....((((..((((((((((..((((((((......)))......))))).)))).))))))...)))))).))).))))) | 0.980 -34.40 | ||||
| rat | chromosome:4:120263223:120263320:1 | Same_strand|Intronic_coding|ENSRNOT00000021491|ENSRNOG00000015903 ## ENSRNOG00000015903|protein_coding|Add2|Beta-adducin (Erythrocyte adducin subunit beta) (Adducin-63). [Source:UniProtKB/Swiss-Prot;Acc:Q05764] |
sblock9216 [novel_lenNOK_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.271 | no | no | 0.45/0.67 | 18/22/0.67 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 22 20 | 5 3 | 5arm 3arm | 2 2 | 40 2 | 0.11 0.27 | 2 5 | 3 | 3 | -2 | 1 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------------AACUGUG---------------------------------- | 2 | novel | ||
| seed | -----------------------AGGUGGG-------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| --------------------------------------------------------TAACTGTGTTTCTCTCACGCAC-------------------- | 22 | 1 | - | 1 | |
| ----------------------GAGGTGGGAGGAGACGGT---------------------------------------------------------- | 18 | - | 1 | - | |
| rat | gggctaagtgtagtaggaaccaGAGGTGGGAGGAGACGGTtaatacaccaggatgcTAACTGTGTTTCTCTCACGCACaggtgaggccatgatgtcta | ||||
| ************************************************************************************************** | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000040576 ENSRNOG00000006231 Ptpro | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000043505 ENSRNOG00000006231 Ptpro | ||||
| rat | ((((...(((..((....(((....(((((((((((((((((.((........)).))))))).)))))))))).....)))...)))))...)))). | 0.770 -26.50 | |||
| rat | chromosome:4:174585567:174585664:1 | Same_strand|Intronic_non-coding|ENSRNOT00000040576|ENSRNOG00000006231 ## Same_strand|Boundary_non-coding|ENSRNOT00000055677|ENSRNOG00000006231 ## ENSRNOG00000006231|protein_coding|Ptpro|protein tyrosine phosphatase, receptor type, O [Source:RefSeq_peptide;Acc:NP_059032] |
sblock9501 [novel_lenNOK_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.020 | no | no | 0.53/0.55 | 19/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 12 9 | 3 5 | 5arm 3arm | 1 1 | 35 4 | 0.23 0.26 | 2 3 | 2 | 2 | 2 | 0 |
| reads | miRBase family seed | |||
| seed | -------------UAGAGCA------------------------------------------------------ | 1 | novel | |
| seed | -----------------------------------------------UGGUAGC-------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T4S2 | |||
| ------------CTAGAGCAGGGCTGGATCATGA---------------------------------------- | 22 | - | 1 | |
| ----------------------------------------------ATGGTAGCCTGGGCTCTTT--------- | 19 | 1 | - | |
| rat | cctaagaactggCTAGAGCAGGGCTGGATCATGAtaactttttctcATGGTAGCCTGGGCTCTTTataggggga | |||
| ************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>> | ENSRNOT00000000161 ENSRNOG00000000147 NP_001101475.1 | |||
| rat | (((.....(((...(((((.(((((..(((((((.((....)).))))))))))))..)))))...))).))). | 1.000 -25.80 | ||
| rat | chromosome:5:136581985:136582058:-1 | Same_strand|Intronic_coding|ENSRNOT00000000161|ENSRNOG00000000147 ## ENSRNOG00000000147|protein_coding|NP_001101475.1|microtubule associated serine/threonine kinase 2 [Source:RefSeq_peptide;Acc:NP_001101475] |
sblock9640 [novel_lenNOK_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.090 | no | no | 0.47/0.57 | 19/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 29 24 | 7 6 | 5arm 3arm | 1 1 | 43 0 | 0.21 0.19 | 3 2 | 2 | 2 | -2 | 1 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------AUGGUGG------------------------------------- | 1 | novel | |
| seed | ------------------------------GUGUAGG------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -----------------------------TGTGTAGGGCAGTACTTCA------------------------------------------------------------------- | 19 | 1 | - | |
| ----------------------------------------------------------------------TATGGTGGTGTCCCCTACCAG------------------------ | 21 | - | 1 | |
| rat | ctgttttctcagcttttacagtcttgggcTGTGTAGGGCAGTACTTCAtggtagctcatgtcgtgccaacTATGGTGGTGTCCCCTACCAGgtcagcaggcggctggtcagcaga | |||
| ******************************************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000013741 ENSRNOG00000018338 Vwa1 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000045053 ENSRNOG00000018118 Atad3a | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000024672 ENSRNOG00000018118 Atad3a | |||
| rat | (((((...((((((......(((((((.(((.((((((...(((((((((((.((.........))..))))))).))))..))))))))).)))..))))))))))..))))). | 0.830 -38.90 | ||
| rat | chromosome:5:172608877:172608991:-1 | Same_strand|Intronic_coding|ENSRNOT00000013741|ENSRNOG00000018338 ## Same_strand|Boundary_non-coding|ENSRNOT00000024897|ENSRNOG00000018338 ## ENSRNOG00000018338|protein_coding|Vwa1|von Willebrand factor A domain-containing protein 1 precursor. [Source:UniProtKB/Swiss-Prot;Acc:Q642A6] ## ENSRNOG00000018118|protein_coding|Atad3a|ATPase family AAA domain-containing protein 3. [Source:UniProtKB/Swiss-Prot;Acc:Q3KRE0] |
sblock9860 [novel_lenNOK_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.023 | no | no | 0.45/0.60 | 18/22/0.67 | 0.0 0.7 | 1.0 1.7 | 3 3 | 0 0 | 2 3 | 0 0 | 26 23 | 7 3 | 5arm 3arm | 1 1 | 43 0 | 0.35 0.23 | 3 2 | 6 | 3 | -4 | 1 |
| reads | miRBase family seed | ||||
| seed | ---------------------------CAGAGAG------------------------------------------------------------------------------ | 3 | novel | ||
| seed | --------------------------------------------------------------------GCUCACC------------------------------------- | 2 | novel | ||
| seed | -------------------------------------------------------------------UGCUCAC-------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T3S1 | |||
| -------------------------------------------------------------------TGCTCACCCATTCCCTCTGCAG----------------------- | 22 | - | 1 | - | |
| --------------------------TCAGAGAGAGTAGAGGACAA------------------------------------------------------------------ | 20 | - | 1 | - | |
| --------------------------TCAGAGAGAGTAGAGGAC-------------------------------------------------------------------- | 18 | - | 1 | - | |
| --------------------------TCAGAGAGAGTAGAGGACA------------------------------------------------------------------- | 19 | 1 | - | - | |
| ------------------------------------------------------------------CTGCTCACCCATTCCCTCTG-------------------------- | 20 | - | - | 1 | |
| -------------------------------------------------------------------TGCTCACCCATTCCCTCTGCA------------------------ | 21 | 1 | - | - | |
| rat | agcttctgttcctgctggcatttgtcTCAGAGAGAGTAGAGGACAAgcagggaacctccccgctccCTGCTCACCCATTCCCTCTGCAGgtggaccagtccggccttggctt | ||||
| **************************************************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000019231 ENSRNOG00000014241 Ece1 | ||||
| rat | ((((...(((...(((((..((..((((((((.((((...((...((((((((..........))))))))..)).)))).))))).)))..)))))))..)))...)))). | 0.970 -39.60 | |||
| rat | chromosome:5:156708878:156708989:1 | Same_strand|Intronic_coding|ENSRNOT00000019231|ENSRNOG00000014241 ## ENSRNOG00000014241|protein_coding|Ece1|Endothelin-converting enzyme 1 (EC 3.4.24.71) (ECE-1). [Source:UniProtKB/Swiss-Prot;Acc:P42893] |
sblock9894 [novel_lenNOK_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.108 | no | no | 0.58/0.63 | 19/24/0.33 | 0.0 0.0 | 2.5 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 10 23 | 3 5 | 5arm 3arm | 1 1 | 35 0 | 0.26 0.26 | 2 2 | 3 | 2 | 2 | -3 |
| reads | miRBase family seed | |||
| seed | -----------CCCUGUG-------------------------------------------------------------------------- | 2 | novel | |
| seed | ---------------------------------------------------UCUCCGU---------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S2 | |||
| ----------CCCCTGTGGTAGAGACTGA--------------------------------------------------------------- | 19 | 1 | - | |
| ----------CCCCTGTGGTAGAGACTGAGCTGG---------------------------------------------------------- | 24 | - | 1 | |
| --------------------------------------------------GTCTCCGTGTCCTCCACAG----------------------- | 19 | 1 | - | |
| rat | ccacatggtgCCCCTGTGGTAGAGACTGAGCTGGtgtctggtaatgcagcGTCTCCGTGTCCTCCACAGgctgtgtcatcaccatctctgga | |||
| ******************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000000079 ENSRNOG00000010580 Acot7 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000014213 ENSRNOG00000010580 Acot7 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000047920 ENSRNOG00000010580 Acot7 | |||
| rat | (((.((((((..(((((((..((.((.(((.((.(((........))).)).))).)).))..))))))).........))))))...))). | 0.470 -32.30 | ||
| rat | chromosome:5:169491415:169491506:1 | Same_strand|Intronic_coding|ENSRNOT00000047920|ENSRNOG00000010580 ## ENSRNOG00000010580|protein_coding|Acot7|Cytosolic acyl coenzyme A thioester hydrolase (EC 3.1.2.2) (Long chain acyl-CoA thioester hydrolase) (CTE-II) (CTE-IIa) (Brain acyl-CoA hydrolase) (ACT) (CTE-IIb) (LACH1) (MTE-II) (ACH1) (Acyl-CoA thioesterase 7). [Source:UniProtKB/Swiss-Prot;Acc:Q64559] |
novel_lenNOK_multiarm_nonpairedHIGH_bulgeHIGH (34 loci)
block140285 [novel_lenNOK_multiarm_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.731 | no | no | 0.29/0.50 | 24/26/0.25 | 0.0 0.0 | 0.0 0.0 | 6 1 | 0 0 | 1 1 | 0 0 | 12 26 | 1 -11 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.35 0.50 | 4 7 | 8 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------ACACUUU---------------------------------------------------------------- | 7 | novel |
| seed | ---------------------------AUCAACU-------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------TACACTTTTAAGGTTATCAACTCTCC---------------------------------------------- | 26 | 6 | |
| ------------TACACTTTTAAGGTTATCAACTCT------------------------------------------------ | 24 | 1 | |
| --------------------------TATCAACTCTCCGGACAGAATGGG---------------------------------- | 24 | 1 | |
| rat | ggggacttcctcTACACTTTTAAGGTTATCAACTCTCCggacagaatgggccttgtgacttcagtgctgacagaaatgttctcc | ||
| ************************************************************************************ | |||
| rat | (((((((((.((..((((....((((((.(((...((((.......))))..))))))))).))))..))..)))..)))))). | 0.570 -16.30 |
| rat | chromosome:11:84946059:84946142:-1 | intergenic |
block879153 [novel_lenNOK_multiarm_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.121 | no | no | 0.36/0.42 | 19/22/0.40 | 0.8 0.0 | 1.0 0.0 | 4 1 | 0 0 | 3 1 | 0 0 | 7 16 | 0 -8 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.35 0.55 | 4 8 | 5 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------CAACUGC-------------------------------------------------- | 3 | novel | |||
| seed | -----------CUGCUUG----------------------------------------------- | 1 | novel | |||
| seed | -----------------GGUACAU----------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S2 | T5S1 | T5S2 | |||
| -------TCAACTGCTTGGTACATGA--------------------------------------- | 19 | 1 | - | 1 | 1 | |
| ----------ACTGCTTGGTACATGATACT----------------------------------- | 20 | - | - | 1 | - | |
| ----------------TGGTACATGATACTAAAACTGG--------------------------- | 22 | - | 1 | - | - | |
| rat | cctttcaTCAACTGCTTGGTACATGATACTAAAACTGGagtgtcctgttagtatagaactaagga | |||||
| ***************************************************************** | ||||||
| rat | ((((...((...((((....(((.((((((........)))))).))).))))..))...)))). | 0.910 -13.70 | ||||
| rat | chromosome:1:124840995:124841059:-1 | intergenic |
block996232 [novel_lenNOK_multiarm_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.108 | no | no | 0.35/0.47 | 19/25/0.50 | 0.0 0.0 0.0 | 0.0 0.5 0.0 | 1 4 1 | 0 0 0 | 1 2 1 | 0 0 0 | 9 14 25 | 13 2 -7 | 5arm 5arm 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.37 0.60 0.74 | 5 14 12 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------AGCUUAG--------------------------------------------------------- | 4 | novel | |
| seed | ----------UAGCCAG-------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------CUAAAAA---------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------------CAGCTTAGGACACTAAAAACCCTCT---------------------------------------- | 25 | 1 | 1 | |
| --------------CAGCTTAGGACACTAAAAACCCTC----------------------------------------- | 24 | - | 2 | |
| -------------------------ACTAAAAACCCTCTAGTTACTCT------------------------------- | 23 | 1 | - | |
| ---------TTAGCCAGCTTAGGACACT--------------------------------------------------- | 19 | - | 1 | |
| rat | gcatgagtgTTAGCCAGCTTAGGACACTAAAAACCCTCTAGTTACTCTatctcttctacttctgagtgttgacacttgc | |||
| ******************************************************************************* | ||||
| rat | ....((((((((((..((((((((..............(((.....)))..........)))))))))))))))))).. | 0.780 -16.65 | ||
| rat | chromosome:1:124853114:124853192:1 | intergenic |
block1469293 [novel_lenNOK_multiarm_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.101 | no | no | 0.42/0.48 | 19/24/0.25 | 0.4 0.0 0.0 | 0.0 0.0 0.0 | 5 2 1 | 0 0 0 | 3 1 1 | 0 0 0 | 4 12 16 | 9 3 -6 | 5arm 5arm 5arm_loop_3arm | 1 2 2 | nd nd nd | 0.53 0.37 0.46 | 6 4 6 | 8 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------GGCUCUC------------------------------------------------------------ | 4 | novel | ||
| seed | -------------CCAUGCU------------------------------------------------------ | 2 | novel | ||
| seed | -----CUGGCUC-------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------GCUUUUC-------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ------TGGCTCTCCATGCTTTTCA------------------------------------------------- | 19 | 1 | - | 3 | |
| ------------TCCATGCTTTTCATTCCTG------------------------------------------- | 19 | 2 | - | - | |
| ----------------TGCTTTTCATTCCTGGCTTTTCCT---------------------------------- | 24 | - | - | 1 | |
| ----TCTGGCTCTCCATGCTTTTCA------------------------------------------------- | 21 | - | 1 | - | |
| rat | aggaTCTGGCTCTCCATGCTTTTCATTCCTGGCTTTTCCTagttctccagagttctcagcatttccctccttcc | ||||
| ************************************************************************** | |||||
| rat | .(((...((......(((((....(((.((((((......))....)))))))....)))))......)).))) | 0.750 -10.80 | |||
| rat | chromosome:3:76935683:76935756:1 | intergenic |
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