other hairpins
novel_lenNOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH (33 loci)
sblock1293 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.102 | no | no | 0.32/0.38 | 19/22/0.40 | 0.0 1.3 0.0 | 0.0 0.7 0.0 | 1 3 1 | 0 0 0 | 1 1 1 | 0 0 0 | 9 14 21 | 5 -3 -5 | 5arm 5arm_loop 3arm_loop | 5 5 5 | nd nd nd | 0.37 0.37 0.43 | 3 3 4 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------UCACAUU---------------------------------------------------- | 1 | miR-23a/23b | |
| seed | ----------CCACUGU---------------------------------------------------------- | 1 | novel | |
| seed | ------------------ACAUUUU-------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------UGCUUGU---------------------------------- | 1 | novel | |
| seed | ---------------GUCACAU----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| ---------------------------------TTGCTTGTTGTTAGTGTTGAG--------------------- | 21 | 1 | - | |
| ---------------GTCACATTTTTGAAAGCAT----------------------------------------- | 19 | 1 | - | |
| ---------TCCACTGTCACATTTTTGA----------------------------------------------- | 19 | - | 1 | |
| --------------TGTCACATTTTTGAAAGCATTG--------------------------------------- | 22 | 1 | - | |
| -----------------CACATTTTTGAAAGCATTG--------------------------------------- | 19 | 1 | - | |
| rat | ggcaccagcTCCACTGTCACATTTTTGAAAGCATTGCTTGTTGTTAGTGTTGAGgcttcatggagtgtgatgcta | |||
| *************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | |||
| rat | ((((.((((((((..(((.((...((((.((((.....)))).))))...)).)))....)))))).)).)))). | 0.950 -20.60 | ||
| rat | chromosome:1:47848651:47848725:1 | Same_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
sblock1345 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.232 | no | no | 0.32/0.38 | 19/22/0.40 | 0.0 1.3 0.0 | 0.0 0.7 0.0 | 1 3 1 | 0 0 0 | 1 1 1 | 0 0 0 | 9 14 21 | 5 -3 -5 | 5arm 5arm_loop 3arm_loop | 5 5 5 | nd nd nd | 0.42 0.37 0.43 | 3 3 4 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------UCACAUU---------------------------------------------------- | 1 | miR-23a/23b | |
| seed | ----------CCACUGU---------------------------------------------------------- | 1 | novel | |
| seed | ------------------ACAUUUU-------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------UGCUUGU---------------------------------- | 1 | novel | |
| seed | ---------------GUCACAU----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| ---------------------------------TTGCTTGTTGTTAGTGTTGAG--------------------- | 21 | 1 | - | |
| ---------------GTCACATTTTTGAAAGCAT----------------------------------------- | 19 | 1 | - | |
| ---------TCCACTGTCACATTTTTGA----------------------------------------------- | 19 | - | 1 | |
| --------------TGTCACATTTTTGAAAGCATTG--------------------------------------- | 22 | 1 | - | |
| -----------------CACATTTTTGAAAGCATTG--------------------------------------- | 19 | 1 | - | |
| rat | ggcaccagcTCCACTGTCACATTTTTGAAAGCATTGCTTGTTGTTAGTGTTGAGgcttcaaggagtgtgatgcta | |||
| *************************************************************************** | ||||
| rat | ((((.(((((((...(((.((...((((.((((.....)))).))))...)).))).....))))).)).)))). | 0.440 -18.90 | ||
| rat | chromosome:1:47971267:47971341:1 | intergenic |
sblock150 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.206 | no | no | 0.32/0.38 | 19/22/0.40 | 0.0 1.3 0.0 | 0.0 0.7 0.0 | 1 3 1 | 0 0 0 | 1 1 1 | 0 0 0 | 8 13 19 | 5 -3 -5 | 5arm 5arm_loop 3arm_loop | 5 5 5 | nd nd nd | 0.37 0.37 0.43 | 3 3 4 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------CCACUGU-------------------------------------------------------- | 1 | novel | |
| seed | --------------GUCACAU--------------------------------------------------- | 1 | novel | |
| seed | -----------------ACAUUUU------------------------------------------------ | 1 | novel | |
| seed | ---------------UCACAUU-------------------------------------------------- | 1 | miR-23a/23b | |
| seed | ---------------------------------UGCUUGU-------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| --------------------------------TTGCTTGTTGTTAGTGTTGAG------------------- | 21 | 1 | - | |
| -------------TGTCACATTTTTGAAAGCATTG------------------------------------- | 22 | 1 | - | |
| --------TCCACTGTCACATTTTTGA--------------------------------------------- | 19 | - | 1 | |
| ----------------CACATTTTTGAAAGCATTG------------------------------------- | 19 | 1 | - | |
| --------------GTCACATTTTTGAAAGCAT--------------------------------------- | 19 | 1 | - | |
| rat | gcaccagcTCCACTGTCACATTTTTGAAAGCATTGCTTGTTGTTAGTGTTGAGgcttcatggagtgtgatgc | |||
| ************************************************************************ | ||||
| rat | (((.((((((((..(((.((...((((.((((.....)))).))))...)).)))....)))))).)).))) | 0.910 -18.30 | ||
| rat | chromosome:1:48363680:48363751:-1 | intergenic |
sblock5060 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.228 | no | no | 0.37/0.53 | 19/23/0.29 | 0.0 2.5 0.0 | 0.0 0.5 0.0 | 4 2 1 | 0 0 0 | 1 2 1 | 0 0 0 | 11 45 35 | 10 -13 -1 | 5arm 3arm_loop 3arm | 2 2 2 | nd nd nd | 0.37 0.63 0.45 | 3 7 4 | 7 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------CCAUUUG------------------------------------------------------------------------------------------ | 4 | novel | |
| seed | -----------------------------------------AAAAUAC------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------ACCCCUU-------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------GCCCUAG------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------TCCATTTGCTGAGTAAACT------------------------------------------------------------------------------- | 19 | - | 4 | |
| ----------------------------------------------------TGCCCTAGGAATAAAGACAACA----------------------------------- | 22 | 1 | - | |
| ----------------------------------------TAAAATACCCCTTGCCCTAGGAA---------------------------------------------- | 23 | 1 | - | |
| ---------------------------------------------TACCCCTTGCCCTAGGAAT--------------------------------------------- | 19 | - | 1 | |
| rat | gccagaccctcTCCATTTGCTGAGTAAACTtgcccagggttaaaataccccttgccctaggaataaagacaacataaagtgaaaacatggagtgttcaggtcctcggtg | |||
| ************************************************************************************************************* | ||||
| rat | (((.((((..(((((((..((..((...(((.((.(((((.............))))).))....)))...))....))..))....)))))......))))...))). | 0.620 -25.32 | ||
| rat | chromosome:17:18977432:18977540:-1 | intergenic |
sblock7965 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.437 | no | no | 0.37/0.53 | 19/25/0.29 | 0.0 4.4 0.0 | 0.0 2.4 0.0 | 1 5 1 | 0 0 0 | 1 3 1 | 0 0 0 | 0 31 21 | 22 -20 3 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.37 0.58 0.35 | 4 5 2 | 7 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------GGGCGUU-------------------------------------------------- | 2 | novel | ||
| seed | --------------------------------------------UCCUUAG------------------------------------------- | 2 | novel | ||
| seed | ------------------------------------------------------AUCUCAG--------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------CCUUAGU------------------------------------------ | 1 | novel | ||
| seed | -CAUACCC-------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------TTCCTTAGTAAATCTCAGG-------------------------------- | 19 | 1 | - | 1 | |
| --------------------------------------------TCCTTAGTAAATCTCAGGC------------------------------- | 19 | - | 1 | - | |
| -----------------------------------------------------AATCTCAGGCCTGCTTGATG--------------------- | 20 | - | 1 | - | |
| ------------------------------------TGGGCGTTTCCTTAGTAAATCTC----------------------------------- | 23 | - | 1 | - | |
| TCATACCCAGGGAGAGTGA--------------------------------------------------------------------------- | 19 | - | - | 1 | |
| ------------------------------------TGGGCGTTTCCTTAGTAAATCTCAG--------------------------------- | 25 | - | 1 | - | |
| rat | TCATACCCAGGGAGAGTGAtcaaggagcaggatgggTGGGCGTTTCCTTAGTAAATCTCAGGCCTGCTTGATGcttcacagtcttttcagatgc | ||||
| ********************************************************************************************** | |||||
| rat | .(((....(((((..((((.((..(((((((.((((...((.........))....))))..)))))))..))..))))..)))))....))). | 0.980 -25.50 | |||
| rat | chromosome:3:76940440:76940533:1 | intergenic |
sblock844 [novel_lenNOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.998 | no | no | 0.60/0.74 | 18/25/0.38 | 0.0 3.5 0.0 | 0.0 2.2 0.0 | 1 6 1 | 0 0 0 | 1 4 1 | 0 0 0 | 20 11 7 | -14 -7 6 | 5arm_loop_3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.76 0.50 0.50 | 14 3 3 | 8 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------ACCCGCA---------------------------- | 2 | novel | |||
| seed | ------------------------------------------------GACAGAG--------------------- | 2 | novel | |||
| seed | ---------------------GAACUAC------------------------------------------------ | 1 | novel | |||
| seed | ----------------------------------------------------GAGCCGC----------------- | 1 | novel | |||
| seed | ---------------------------------------CCACCCG------------------------------ | 1 | novel | |||
| seed | ----------------------------------------------CAGACAG----------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T2S2 | T3S1 | T3S2 | |||
| -----------------------------------------------AGACAGAGCCGCAGCCCA----------- | 18 | - | - | - | 2 | |
| ----------------------------------------CACCCGCAGACAGAGCCGCAG--------------- | 21 | - | 2 | - | - | |
| ---------------------------------------------GCAGACAGAGCCGCAGCCC------------ | 19 | 1 | - | - | - | |
| --------------------GGAACTACAGCACTCTCCACCACCC------------------------------- | 25 | - | - | 1 | - | |
| ---------------------------------------------------AGAGCCGCAGCCCAGGAA------- | 18 | 1 | - | - | - | |
| --------------------------------------ACCACCCGCAGACAGAGCCGC----------------- | 21 | - | - | 1 | - | |
| rat | ctcccatgatgccccgcggcGGAACTACAGCACTCTCCACCACCCGCAGACAGAGCCGCAGCCCAGGAAgccgagt | |||||
| **************************************************************************** | ||||||
| rat | (((........((..((.((((..((...((..............))....))..)))).))...)).....))). | 0.790 -11.66 | ||||
| rat | chromosome:1:176443410:176443485:-1 | intergenic ## {SimpF: oe = 0.82 -1 CpG} |
novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH (33 loci)
block1307577 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.050 | no | no | 0.44/0.65 | 18/23/0.75 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 29 38 44 45 | -1 -5 -16 -16 | 5arm_loop 5arm_loop 5arm_loop 3arm_loop | 1 1 1 1 | 41 32 26 17 | 0.39 0.56 0.83 0.80 | 3 6 17 15 | 4 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | ------------------------------CAUCCAG--------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------UUACUAC------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------------------------------------------------CCAACCC--------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------CAACCCA------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| -----------------------------------------------------ACCAACCCCCAAAGCCGGGT--------------------------------------------- | 20 | - | 1 | |
| -----------------------------CCATCCAGGTTTACTACAACCCA------------------------------------------------------------------ | 23 | 1 | - | |
| --------------------------------------TTTACTACAACCCAGACC-------------------------------------------------------------- | 18 | 1 | - | |
| --------------------------------------------ACAACCCAGACCAACCCCCAAAG--------------------------------------------------- | 23 | 1 | - | |
| rat | aaccacagaagccaaggaactgattaaagCCATCCAGGTTTACTACAACCCAGACCAACCCCCAAAGCCGGGTgaggaaacccactgtggagttagttacctttcctgctttcggttg | |||
| ********************************************************************************************************************** | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000034521 ENSRNOG00000025074 Fgg | |||
| rat | ((((...(((((..(((((.(((((((..((((...(((((.((...((((..................)))).)).)))))....))))..)))))))...)))))))))).)))). | 0.650 -32.17 | ||
| rat | chromosome:2:174727873:174727990:1 | Same_strand|Boundary_coding|ENSRNOT00000034521|ENSRNOG00000025074 ## ENSRNOG00000025074|protein_coding|Fgg|Fibrinogen gamma chain precursor. [Source:UniProtKB/Swiss-Prot;Acc:P02680] |
sblock10573 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.425 | no | no | 0.48/0.54 | 21/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 12 14 | 1 -2 | 5arm 3arm_loop | 1 1 | nd nd | 0.33 0.42 | 2 3 | 3 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | -------------------------------------CGGCAGG------------------------------ | 2 | novel | |
| seed | -------------AGGGUUA------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S2 | |||
| ------------------------------------ACGGCAGGTGTGCAGTTTCCCTTT-------------- | 24 | - | 2 | |
| ------------CAGGGTTATCAGTTCACCATC----------------------------------------- | 21 | 1 | - | |
| rat | agtcccctgcctCAGGGTTATCAGTTCACCATCtatACGGCAGGTGTGCAGTTTCCCTTTaagctctggtactt | |||
| ************************************************************************** | ||||
| rat | (((.((..((...((((..((..((.((((..((....))..)))).)).))..))))....))...)).))). | 0.790 -15.40 | ||
| rat | chromosome:7:10624349:10624422:-1 | intergenic |
sblock11358 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.582 | no | no | 0.45/0.53 | 19/22/0.75 | 0.0 0.0 | 0.0 0.0 | 1 3 | 0 0 | 1 1 | 0 0 | 18 24 | 7 -2 | 5arm 3arm_loop | 1 1 | nd nd | 0.32 0.36 | 2 3 | 4 | 1 | -10 | -7 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------GCAAGGC-------------------------------------- | 3 | novel |
| seed | -------------------GCAGGCU-------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------------------TGCAAGGCTTACAGCTAACAGA------------------------ | 22 | 3 | |
| ------------------AGCAGGCTTTGTGAGTTGG--------------------------------------------------------- | 19 | 1 | |
| rat | gctcatactggaaaaggaAGCAGGCTTTGTGAGTTGGgagagtgagggTGCAAGGCTTACAGCTAACAGAtactggatgcctctctgtcaggca | ||
| ********************************************************************************************** | |||
| rat | (((...((.(((..(((...(((..(((((.(((((..((..((......))...))..))))).)))))..)))....))).)))))..))). | 0.870 -23.20 |
| rat | chromosome:7:112741942:112742035:1 | intergenic |
sblock11666 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.694 | no | no | 0.43/0.52 | 20/21/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 2 1 | 0 0 0 | 1 1 1 | 0 0 0 | 6 17 10 | 9 -1 6 | 5arm 5arm_loop 3arm | 1 1 1 | nd nd nd | 0.48 0.35 0.43 | 4 3 4 | 4 | 1 | 6 | 7 |
| reads | miRBase family seed | ||
| seed | ------------------GUCUGCA----------------------------------------------------- | 2 | novel |
| seed | -------GAAACAC---------------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------GACUCGC----------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------TGTCTGCAGAGCTAGTTTCT----------------------------------------- | 20 | 2 | |
| ------TGAAACACCAATGTCTGCAGA--------------------------------------------------- | 21 | 1 | |
| -----------------------------------------------TGACTCGCACAAAGTCCAGTG---------- | 21 | 1 | |
| rat | tctgtcTGAAACACCAATGTCTGCAGAGCTAGTTTCTaatggaggacTGACTCGCACAAAGTCCAGTGcaaaagaaga | ||
| ****************************************************************************** | |||
| rat | (((.(((....(((..((...(((.(((.(((((((.....))).)))).))))))....))...)))....)))))) | 0.400 -12.90 |
| rat | chromosome:8:57731818:57731895:-1 | intergenic |
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