other hairpins
novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH (33 loci)
sblock7575 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.867 | no | no | 0.55/0.67 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 35 22 | -4 12 | 5arm_loop 3arm | 1 1 | nd nd | 0.48 0.35 | 5 2 | 2 | 2 | 14 | 0 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------UGUGUGA---------------------------------- | 1 | novel | |
| seed | ------------------------------------GGAUGGA--------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S1 | |||
| -----------------------------------CGGATGGAGAGCGCAGAGGGT-------------------------------------------------------- | 21 | 1 | - | |
| ----------------------------------------------------------------------GTGTGTGAGGGAGAAGGTTC---------------------- | 20 | - | 1 | |
| rat | gcctccggctgaggtcaggctccacctcctttctcCGGATGGAGAGCGCAGAGGGTtgtttgttgttgggGTGTGTGAGGGAGAAGGTTCgagatcacctggctaggtgggc | |||
| **************************************************************************************************************** | ||||
| rat | ((((((((((.((((....(((.((((.((..(((((.((....((((((((......))))).)))...)).)).)))..)).))))..)))...)))))))).)).)))) | 0.670 -36.50 | ||
| rat | chromosome:3:105410470:105410581:-1 | intergenic |
sblock7691 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.196 | no | no | 0.40/0.52 | 20/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 12 0 | -1 11 | 5arm_loop 3arm | 1 1 | nd nd | 0.55 0.45 | 5 3 | 2 | 2 | 13 | 14 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------UUACUUG--------------- | 1 | novel | |
| seed | -------------AGUUCAU------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------CTTACTTGTGAGCGTACAGGAGC | 23 | - | 1 | |
| ------------TAGTTCATGCACTTGTGAGT------------------------------------ | 20 | 1 | - | |
| rat | tcttgtttctctTAGTTCATGCACTTGTGAGTatctcaacctggcCTTACTTGTGAGCGTACAGGAGC | |||
| ******************************************************************** | ||||
| rat | ((((((..(((..(((....((.....((((...)))).....))...)))...)))...)))))).. | 0.980 -15.20 | ||
| rat | chromosome:3:141086087:141086154:-1 | intergenic |
sblock7963 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.023 | no | no | 0.29/0.60 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 12 12 | -7 -4 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.52 0.40 | 8 3 | 2 | 1 | 0 | 1 |
| reads | miRBase family seed | ||
| seed | -------------UAGAAUU------------------------------------------ | 1 | novel |
| seed | -------------------------------UGGCUGG------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------TTAGAATTGGTAAGAAAACTG----------------------------- | 21 | 1 | |
| ------------------------------CTGGCTGGCTGCTTTCTGAG------------ | 20 | 1 | |
| rat | gctggacagttcTTAGAATTGGTAAGAAAACTGGCTGGCTGCTTTCTGAGctatctgtctag | ||
| ************************************************************** | |||
| rat | .((((((((..(((((((..(((.((........)).)))...)))))))....)))))))) | 0.920 -19.40 |
| rat | chromosome:3:76939887:76939948:1 | intergenic |
sblock8130 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.053 | no | no | 0.32/0.57 | 19/21/0.75 | 0.0 0.0 | 0.3 0.0 | 3 1 | 0 0 | 2 1 | 0 0 | 27 32 | 3 -4 | 5arm 3arm_loop | 2 2 | nd nd | 0.38 0.47 | 3 3 | 4 | 3 | 0 | 5 |
| reads | miRBase family seed | ||||
| seed | ----------------------------AGUGCAA--------------------------------------------------------------------- | 3 | miR-130a/130b/301a/301b | ||
| seed | ------------------------------------------------------UUGACUG------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S1 | T5S1 | |||
| ---------------------------CAGTGCAAGTGTGGACTCAC--------------------------------------------------------- | 20 | 2 | - | - | |
| -----------------------------------------------------ATTGACTGTCTAGTTACTT-------------------------------- | 19 | - | - | 1 | |
| ---------------------------CAGTGCAAGTGTGGACTCACC-------------------------------------------------------- | 21 | - | 1 | - | |
| rat | tgaagaaggtaaacttctccattattaCAGTGCAAGTGTGGACTCACCagtgcATTGACTGTCTAGTTACTTatcagcctgtttcttttgatggaggacttcaa | ||||
| ******************************************************************************************************** | |||||
| rat | (((((.........((((((((((..((((.((..(((..((((...((((......))))...))))...)))..))))))......))))))))))))))). | 0.410 -27.10 | |||
| rat | chromosome:3:108837915:108838018:1 | intergenic |
sblock8181 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.602 | no | no | 0.45/0.77 | 20/22/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 9 37 5 | 15 -15 11 | 5arm 5arm_loop_3arm 3arm | 4 4 4 | nd nd nd | 0.40 0.55 0.32 | 4 7 3 | 4 | 3 | -5 | 2 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------------------GCCGCUU------------------- | 2 | novel | ||
| seed | ----------GCUUCAA------------------------------------------------------------------------ | 1 | novel | ||
| seed | --------------------------------------UGCUCGA-------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S1 | T4S1 | |||
| --------------------------------------------------------------GGCCGCTTTGAGCCTGAGCCCT----- | 22 | - | - | 2 | |
| ---------TGCTTCAACAGTGCTTGAAC------------------------------------------------------------ | 20 | 1 | - | - | |
| -------------------------------------GTGCTCGACCCCTCCGACCCCC------------------------------ | 22 | - | 1 | - | |
| rat | gcgatttccTGCTTCAACAGTGCTTGAACtgaacccgGTGCTCGACCCCTCCGACCCCCgctGGCCGCTTTGAGCCTGAGCCCTttgca | ||||
| ***************************************************************************************** | |||||
| --------------------------------------------------------------------------------------------------- | ENSRNOT00000049261 ENSRNOG00000029827 | ||||
| rat | ((((......(((....(((.(((..((.((...((((((.(((.......)))....)))))).)).))..)))))))))...)))). | 0.890 -22.40 | |||
| rat | chromosome:3:138280945:138281033:1 | Opposite_strand|Intronic_coding|ENSRNOT00000049261|ENSRNOG00000029827 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000055528|ENSRNOG00000029827 ## ENSRNOG00000029827|protein_coding|| |
sblock8407 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.175 | no | no | 0.59/0.67 | 21/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 20 17 | -7 -4 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.48 0.41 | 8 3 | 2 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------CCCAUGG------------------------------- | 1 | novel | |
| seed | ---------------------CCAGCCC-------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T4S2 | |||
| ---------------------------------------------ACCCATGGTGAGGCTCCTGAAG----------------- | 22 | 1 | - | |
| --------------------TCCAGCCCTCCCATCTCTCCC------------------------------------------- | 21 | - | 1 | |
| rat | ggctacgattctgagagctgTCCAGCCCTCCCATCTCTCCCtcatACCCATGGTGAGGCTCCTGAAGgcttacctcagcaggcc | |||
| ************************************************************************************ | ||||
| rat | ((((......(((((((((...(((.((((((((...............)))).))))...)))..))))...)))))..)))) | 0.600 -22.96 | ||
| rat | chromosome:4:67958739:67958822:-1 | intergenic |
sblock9397 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.084 | no | no | 0.48/0.57 | 21/23/1.00 | 0.0 0.0 | 0.0 0.0 | 3 1 | 0 0 | 1 1 | 0 0 | 11 10 | -3 -4 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.35 0.33 | 4 3 | 4 | 1 | 0 | -3 |
| reads | miRBase family seed | ||
| seed | ------------GCACAGA---------------------------------------------- | 3 | novel |
| seed | -----------------------------------UCCUUGA----------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------TGCACAGAGGCAGCTGTCAGTCT------------------------------- | 23 | 3 | |
| ----------------------------------TTCCTTGACAGAGGCTCTAGT---------- | 21 | 1 | |
| rat | gcagagggcaaTGCACAGAGGCAGCTGTCAGTCTTTCCTTGACAGAGGCTCTAGTacattctgta | ||
| ***************************************************************** | |||
| rat | (((((.....(((.(((((.((..(((((((.......)))))))..))))).)).)))))))). | 0.900 -19.70 |
| rat | chromosome:5:114526221:114526285:-1 | intergenic |
sblock9881 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.225 | no | no | 0.55/0.58 | 19/23/0.75 | 0.0 0.0 | 1.0 0.0 | 3 1 | 0 0 | 1 1 | 0 0 | 7 8 | -4 1 | 5arm_loop 3arm | 1 1 | nd nd | 0.35 0.42 | 3 4 | 4 | 2 | 5 | -1 |
| reads | miRBase family seed | |||
| seed | --------UGCCCCA------------------------------------------------------ | 3 | novel | |
| seed | -------------------------------------------UGCUUUA------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S2 | |||
| -------TTGCCCCAGCCTAAACACAC------------------------------------------ | 20 | - | 2 | |
| -------TTGCCCCAGCCTAAACACACTGC--------------------------------------- | 23 | - | 1 | |
| ------------------------------------------GTGCTTTAACCGTGTGGCC-------- | 19 | 1 | - | |
| rat | ctgggttTTGCCCCAGCCTAAACACACTGCctccccacctctGTGCTTTAACCGTGTGGCCgtcccagc | |||
| ********************************************************************* | ||||
| rat | (((((....(((.((...((((((((...............)))).))))....)).)))...))))). | 0.840 -14.56 | ||
| rat | chromosome:5:165498671:165498739:1 | intergenic |
sblock9972 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.276 | no | no | 0.55/0.65 | 20/20/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 2 14 | 6 -4 | 5arm 3arm_loop | 1 1 | nd nd | 0.45 0.35 | 7 3 | 2 | 2 | -10 | -12 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------GUUUUAC-------------------------- | 1 | novel | |
| seed | ---UCUCGGA---------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S2 | |||
| ----------------------------------------CGTTTTACAGCTGGAGCACC-------------- | 20 | - | 1 | |
| --CTCTCGGAGACGGGCGATAG---------------------------------------------------- | 20 | 1 | - | |
| rat | gtCTCTCGGAGACGGGCGATAGctgtggtgttttgacttcCGTTTTACAGCTGGAGCACCcgtccatcactggc | |||
| ************************************************************************** | ||||
| rat | (((.......(((((((..(((((((((................)))))))))..))..))))).......))) | 0.620 -21.43 | ||
| rat | chromosome:6:41874771:41874844:-1 | intergenic |
novel_cloningOK_loopOverlap_nonpairedHIGH_bulgeHIGH (32 loci)
block187698 [novel_cloningOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.546 | no | no | 0.53/0.57 | 18/21/0.86 | 0.0 | 0.0 | 13 | 0 | 7 | 0 | 5 | -6 | 5arm_loop | 3 | nd | 0.57 | 7 | 21 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ------CAAGUCA---------------------------------------- | 21 | miR-125b* | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| -----ACAAGTCAGGCTCTCAGGACC--------------------------- | 21 | 8 | 5 | - | 1 | 1 | - | 1 | |
| -----ACAAGTCAGGCTCTCAGGAC---------------------------- | 20 | - | - | 1 | - | - | 1 | - | |
| -----ACAAGTCAGGCTCTCAGGA----------------------------- | 19 | 2 | - | - | - | - | - | - | |
| -----ACAAGTCAGGCTCTCAGG------------------------------ | 18 | - | - | - | - | - | 1 | - | |
| rat | agaacACAAGTCAGGCTCTCAGGACCagagacagacaggatgacaggtcttct | ||||||||
| ***************************************************** | |||||||||
| rat | ((((.((..((((..((.((.............)).))..))))..)).)))) | 0.920 -8.82 | |||||||
| rat | chromosome:12:19013905:19013957:-1 | intergenic |
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