other hairpins
novel_lenNOK_5varHIGH_loopOverlap_bulgeHIGH (32 loci)
block1600384 [novel_lenNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.577 | no | no | 0.37/0.50 | 19/25/0.38 | 1.2 0.4 | 0.2 1.8 | 4 9 | 0 0 | 1 1 | 0 0 | 4 17 | 13 -1 | 5arm 5arm | 2 2 | nd nd | 0.40 0.30 | 5 5 | 13 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------GAUUUCU----------------------------------------------------------------------- | 7 | novel |
| seed | -----CCUUUGA------------------------------------------------------------------------------------- | 3 | novel |
| seed | ----------GAGAAGU-------------------------------------------------------------------------------- | 1 | novel |
| seed | ------------------UGAUUUC------------------------------------------------------------------------ | 1 | novel |
| seed | ----------------------UUCUUCC-------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------TGATTTCTTCCGTTCAGCAG----------------------------------------------------------- | 20 | 3 | |
| ----TCCTTTGAGAAGTCTGATTTCTTCC-------------------------------------------------------------------- | 25 | 3 | |
| ------------------TGATTTCTTCCGTTCAGCAGGTCCA------------------------------------------------------ | 25 | 2 | |
| ------------------TGATTTCTTCCGTTCAGCA------------------------------------------------------------ | 19 | 2 | |
| ---------TGAGAAGTCTGATTTCTTC--------------------------------------------------------------------- | 19 | 1 | |
| -----------------CTGATTTCTTCCGTTCAGCA------------------------------------------------------------ | 20 | 1 | |
| ---------------------TTTCTTCCGTTCAGCAGGTC-------------------------------------------------------- | 20 | 1 | |
| rat | cgtcTCCTTTGAGAAGTCTGATTTCTTCCGTTCAGCAGGTCCAtaaacagtgaaccagggaagtgcctgctagcagatccactcatcagtggaaggc | ||
| ************************************************************************************************* | |||
| rat | .((((((.((((..(((..(((((.....(((.(((((((((................))....))))))))))))))).)))..)))).))).))) | 0.410 -23.09 |
| rat | chromosome:4:164236331:164236427:-1 | intergenic |
block1600418 [novel_lenNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.127 | no | no | 0.21/0.37 | 19/23/0.50 | 4.2 | 5.5 | 6 | 0 | 1 | 0 | 21 | -14 | 5arm_loop_3arm | 2 | nd | 0.26 | 4 | 6 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------GGACUUU---------------------------------------------------- | 1 | novel |
| seed | -------------------------------GAUUUUG--------------------------------------------- | 1 | novel |
| seed | -------------------------GACUUUG--------------------------------------------------- | 1 | novel |
| seed | -----------------------------UUGAUUU----------------------------------------------- | 1 | novel |
| seed | --------------------------ACUUUGA-------------------------------------------------- | 1 | novel |
| seed | ----------------------CUGGACU------------------------------------------------------ | 1 | miR-378 |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------GACTTTGATTTTGTTTTAA--------------------------------------- | 19 | 1 | |
| ----------------------------TTTGATTTTGTTTTAAAGGGTCC-------------------------------- | 23 | 1 | |
| ------------------------GGACTTTGATTTTGTTTTAAA-------------------------------------- | 21 | 1 | |
| ------------------------------TGATTTTGTTTTAAAGGGTCC-------------------------------- | 21 | 1 | |
| ---------------------CCTGGACTTTGATTTTGTT------------------------------------------- | 19 | 1 | |
| -----------------------TGGACTTTGATTTTGTTTT----------------------------------------- | 19 | 1 | |
| rat | caggggctattaagcctccacCCTGGACTTTGATTTTGTTTTAAAGGGTCCgagagtctctgggatgaatggtcagctctctg | ||
| *********************************************************************************** | |||
| rat | ((((((((.....(((..(((((.(((((((((((((.......))))))..)))))))..))).))...))).))))).))) | 0.900 -24.90 |
| rat | chromosome:4:164237322:164237404:-1 | intergenic |
block1690212 [novel_lenNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.196 | no | no | 0.62/0.74 | 19/21/0.50 | 1.5 | 2.5 | 2 | 0 | 2 | 0 | 22 | -4 | 5arm_loop_3arm | 1 | nd | 0.26 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------CCCGGGA-------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------GGGACUG----------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T4S2 | |||
| -------------------------CGGGACTGGAACGAGCTCTGA---------------------------------------------------- | 21 | 1 | - | |
| ----------------------GCCCGGGACTGGAACGAGC--------------------------------------------------------- | 19 | - | 1 | |
| rat | gcgtgaatacgctgcagcctcaGCCCGGGACTGGAACGAGCTCTGAagcgcgttttcttagtccaagaccctatgagaggagcagtgatttggaagca | |||
| ************************************************************************************************** | ||||
| rat | ((.(((((.((((((..((((((....(((((((((((.(((....))).)))))...))))))......))....)))).)))))))))))...)). | 0.560 -31.00 | ||
| rat | chromosome:4:156423993:156424090:1 | intergenic |
novel_lenNOK_Multihit_5varHIGH_nonpairedHIGH (32 loci)
block526279 [novel_lenNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.871 | no | no | 0.61/0.64 | 19/25/0.25 | 0.0 1.7 | 0.0 1.0 | 1 3 | 0 0 | 1 1 | 0 0 | 19 4 | 9 15 | 3arm 3arm | 6 14 | nd nd | 0.32 0.52 | 3 7 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------------------------AGCCAGA------------------------ | 2 | novel | |
| seed | -----------------------------------------------------------------------------------CCGUUGA------------------------------ | 1 | novel | |
| seed | ----------------------------------------------------------------------------------------------GAGCCAG------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S1 | |||
| ----------------------------------------------------------------------------------------GAGCCAGAGCCAGCTATGTCCACCC------- | 25 | 2 | - | |
| ----------------------------------------------------------------------------------TCCGTTGAGCCAGAGCCAG------------------- | 19 | - | 1 | |
| ---------------------------------------------------------------------------------------------AGAGCCAGCTATGTCCACCCACC---- | 23 | 1 | - | |
| rat | catgtctacccaccttgctgatattcctattgctcatgagcctgactataatgattctaccaatgctgctgacagtctggacTCCGTTGAGCCAGAGCCAGCTATGTCCACCCACCatgc | |||
| ************************************************************************************************************************ | ||||
| rat | ((((.......((...((((...(((.....(((((.(((((.((((..........................)))).)).)))...)))))..))).))))...))........)))). | 0.400 -19.73 | ||
| rat | chromosome:16:21509870:21509989:-1 | intergenic |
block526289 [novel_lenNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.871 | no | no | 0.61/0.64 | 19/25/0.25 | 0.0 1.7 | 0.0 1.0 | 1 3 | 0 0 | 1 1 | 0 0 | 19 4 | 9 15 | 3arm 3arm | 6 14 | nd nd | 0.32 0.52 | 3 7 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------------------------AGCCAGA------------------------ | 2 | novel | |
| seed | -----------------------------------------------------------------------------------CCGUUGA------------------------------ | 1 | novel | |
| seed | ----------------------------------------------------------------------------------------------GAGCCAG------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S1 | |||
| ----------------------------------------------------------------------------------------GAGCCAGAGCCAGCTATGTCCACCC------- | 25 | 2 | - | |
| ----------------------------------------------------------------------------------TCCGTTGAGCCAGAGCCAG------------------- | 19 | - | 1 | |
| ---------------------------------------------------------------------------------------------AGAGCCAGCTATGTCCACCCACC---- | 23 | 1 | - | |
| rat | catgtctacccaccttgctgatattcctattgctcatgagcctgactataatgattctaccaatgctgctgacagtctggacTCCGTTGAGCCAGAGCCAGCTATGTCCACCCACCatgc | |||
| ************************************************************************************************************************ | ||||
| rat | ((((.......((...((((...(((.....(((((.(((((.((((..........................)))).)).)))...)))))..))).))))...))........)))). | 0.400 -19.73 | ||
| rat | chromosome:16:21511961:21512080:-1 | intergenic |
block1030887 [novel_lenNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.012 | no | no | 0.55/0.63 | 18/20/0.40 | 1.8 | 1.0 | 5 | 0 | 5 | 0 | 13 | 10 | 5arm | 23 | nd | 0.35 | 2 | 5 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | --------------GGCAAGC----------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | ----------------CAAGCAG--------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | -------------------GCAGCUG------------------------------------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T2S1 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| -------------AGGCAAGCAGCTGGAAGATG----------------------------------------------------------------------- | 20 | - | - | 1 | 1 | - | |
| ------------------AGCAGCTGGAAGATGGCCC------------------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| ---------------GCAAGCAGCTGGAAGATGG---------------------------------------------------------------------- | 19 | 1 | - | - | - | - | |
| ---------------GCAAGCAGCTGGAAGATG----------------------------------------------------------------------- | 18 | - | 1 | - | - | - | |
| rat | ggctcacctttgcAGGCAAGCAGCTGGAAGATGGCCCactctttctgatcacaacatccagaaagagtcagccctgcacctgctcctccatctaaagagtggtt | ||||||
| ******************************************************************************************************** | |||||||
| ------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000027632 ENSRNOG00000020350 Pacs1 | ||||||
| rat | .((.((((((((..((..(((((.((..((..(((..((((((((((...........))))))))))..))))).)).)))))...))...))))).))))). | 0.950 -33.30 | |||||
| rat | chromosome:1:207889226:207889329:1 | Opposite_strand|Intronic_coding|ENSRNOT00000027632|ENSRNOG00000020350 ## ENSRNOG00000020350|protein_coding|Pacs1|Phosphofurin acidic cluster sorting protein 1 (PACS-1). [Source:UniProtKB/Swiss-Prot;Acc:O88588] |
block1131272 [novel_lenNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.143 | no | no | 0.39/0.62 | 18/21/0.60 | 2.0 0.0 | 3.3 0.0 | 3 2 | 0 0 | 3 1 | 0 0 | 14 24 | 12 6 | 5arm 5arm | 15 15 | nd nd | 0.48 0.43 | 5 3 | 5 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------GGAUUCC----------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---------------UCAACAA--------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------CAAAAUG----------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------AACAAAA------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T2S2 | T3S2 | |||
| ------------------------TGGATTCCACCGAGCCACCAC---------------------------------------------------------------- | 21 | 2 | - | - | |
| --------------GTCAACAAAATGGATTCC----------------------------------------------------------------------------- | 18 | - | 1 | - | |
| ----------------CAACAAAATGGATTCCACC-------------------------------------------------------------------------- | 19 | - | - | 1 | |
| ------------------ACAAAATGGATTCCACCGAGC---------------------------------------------------------------------- | 21 | 1 | - | - | |
| rat | agctaattgttggtGTCAACAAAATGGATTCCACCGAGCCACCACacagtcagaagagataggaggaaatcgttaaggaagtcagcacctacattaagaaaattggcta | ||||
| ************************************************************************************************************* | |||||
| rat | ((((((((((.(((((........((..((((..(((.((.((.....(((......))).)).))...)))....))))..))))))).)))........))))))). | 0.920 -23.50 | |||
| rat | chromosome:2:19567766:19567874:-1 | intergenic |
block1414349 [novel_lenNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.094 | no | no | 0.54/0.56 | 18/24/0.50 | 2.0 | 1.0 | 2 | 0 | 2 | 0 | 6 | 5 | 3arm | 61 | nd | 0.33 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------CCAAGUC------------------ | 1 | novel | |
| seed | ------------------------------------------AUGGCCA---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T4S2 | |||
| -----------------------------------------CATGGCCAAGTCCAAGAACCACAC------ | 24 | 1 | - | |
| ---------------------------------------------GCCAAGTCCAAGAACCAC-------- | 18 | - | 1 | |
| rat | gcagtcctatgtgcttctgacgccatgggttaccatgcagaCATGGCCAAGTCCAAGAACCACACcatgta | |||
| *********************************************************************** | ||||
| rat | (((......((((.(((((((((((((.((......))...))))))...)))..)))).))))...))). | 0.790 -18.80 | ||
| rat | chromosome:3:142040882:142040952:-1 | intergenic |
block1464349 [novel_lenNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.401 | no | no | 0.55/0.58 | 19/22/0.50 | 1.5 | 0.0 | 2 | 0 | 2 | 0 | 14 | 13 | 5arm | 129 | nd | 0.36 | 2 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------GCACAGU------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------------ACGGCAC--------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T4S2 | |||
| -----------------GGCACAGTCAAGGCTGAGA------------------------------------------------------------------------- | 19 | 1 | - | |
| --------------AACGGCACAGTCAAGGCTGAGA------------------------------------------------------------------------- | 22 | - | 1 | |
| rat | cccatggcaaattcAACGGCACAGTCAAGGCTGAGAatgggaagcttgtcatcaacgggaggcccatcatcatcttcctggagtgagatcccgctaacatcaaatgggg | |||
| ************************************************************************************************************* | ||||
| rat | (((((...........(((..((.((.(((.(((..(((((...(((((.....)))))...)))))..)))....))).)).)).....)))..........))))). | 0.470 -29.10 | ||
| rat | chromosome:3:67317928:67318036:1 | intergenic |
block1760164 [novel_lenNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.743 | no | no | 0.55/0.58 | 19/22/0.50 | 1.5 | 0.0 | 2 | 0 | 2 | 0 | 14 | 2 | 3arm | 129 | nd | 0.32 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------ACGGCAC---------------------------- | 1 | novel | |
| seed | ------------------------------------------------GCACAGU------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T4S2 | |||
| --------------------------------------------AACGGCACAGTCAAGGCTGAGA-------------- | 22 | - | 1 | |
| -----------------------------------------------GGCACAGTCAAGGCTGAGA-------------- | 19 | 1 | - | |
| rat | acatggtctacatgttccagtatgactccacccctggtaagttcAACGGCACAGTCAAGGCTGAGAatgggaagcttgtc | |||
| ******************************************************************************** | ||||
| rat | (((...(((....((((((((.(((((...((..(((.....)))..))...)))))..)))).)))).)))....))). | 0.590 -16.70 | ||
| rat | chromosome:5:100213483:100213562:-1 | intergenic |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 30681 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.