other hairpins
novel_lenNOK_cloningHIGH_bulgeHIGH (32 loci)
block2235948 [novel_lenNOK_cloningHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.417 | no | no | 0.11/0.11 | 18/19/0.00 | 0.0 | 0.0 | 145 | 0 | 2 | 0 | 26 | 6 | 3arm | 1 | nd | 0.22 | 4 | 180 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------AAAAACA------------------------------------ | 180 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -------------------------------------------------------------------------TAAAAACATTAACAAATA-------------------------- | 18 | 145 | 33 | |
| -------------------------------------------------------------------------TAAAAACATTAACAAATAT------------------------- | 19 | 2 | - | |
| rat | gggctttgagttaaggaaatttaattaaaagatattttgtagagattaatggtaggatttaaaagaaagatagTAAAAACATTAACAAATAtcaaattaaataaaagattgacagct | |||
| ********************************************************************************************************************* | ||||
| rat | .((((....(((((....((((((((....((((.(((((......(((((.((..((((.......))))..))....)))))))))))))).))))))))......))))))))) | 0.770 -12.40 | ||
| rat | chromosome:7:90750608:90750724:1 | intergenic |
block2276930 [novel_lenNOK_cloningHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.192 | no | no | 0.47/0.50 | 18/19/0.00 | 0.0 | 0.0 | 126 | 0 | 8 | 0 | 22 | 11 | 5arm | 1 | nd | 0.28 | 4 | 166 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | -----------------------CGACUCC------------------------------------------------------------------------------------------ | 166 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S2 | |||
| ----------------------TCGACTCCCAAGTGTTCT-------------------------------------------------------------------------------- | 18 | 6 | 4 | 54 | 14 | 51 | 21 | 14 | 1 | |
| ----------------------TCGACTCCCAAGTGTTCTA------------------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | - | |
| rat | gatcatacagaacagcattgtaTCGACTCCCAAGTGTTCTatatcgttttgttaatgtttaaaatgtgtagaatcattcacagtttatggaatcagcgtcaattaattgttctgaggtta | |||||||||
| ************************************************************************************************************************ | ||||||||||
| rat | ((((...((((((((((((.(((.((((....(((((((((((.(((((((........)))))))))))))).))))...)))).))).)))..))..........))))))).)))). | 0.540 -24.50 | ||||||||
| rat | chromosome:8:5339252:5339371:-1 | intergenic |
block2473256 [novel_lenNOK_cloningHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.065 | no | no | 0.58/0.61 | 18/19/0.00 | 0.0 | 0.0 | 126 | 0 | 10 | 0 | 17 | 4 | 3arm | 1 | nd | 0.26 | 4 | 138 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --------------------------------------------------------CCACAGG---------------------------- | 137 | novel | |||||||||
| seed | ---------------------------------------------------------CACAGGG--------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------ACCACAGGGTAGAGCCAC------------------ | 18 | 17 | 6 | 13 | 5 | 19 | 17 | 8 | 13 | 14 | 13 | |
| -------------------------------------------------------ACCACAGGGTAGAGCCACA----------------- | 19 | 1 | 2 | - | - | 1 | - | 1 | - | 6 | 1 | |
| --------------------------------------------------------CCACAGGGTAGAGCCACA----------------- | 18 | - | - | 1 | - | - | - | - | - | - | - | |
| rat | gccatatccacacagctgtttggttcttagcggaccccttgtatgcaaagggcaaACCACAGGGTAGAGCCACAcgctgttctggactgcc | |||||||||||
| ******************************************************************************************* | ||||||||||||
| ----------------------------------------------------------------------------------------------------- | ENSRNOT00000061433 ENSRNOG00000039976 Ptk7 | |||||||||||
| ----------------------------------------------------------------------------------------------------- | ENSRNOT00000024558 ENSRNOG00000039976 Ptk7 | |||||||||||
| ----------------------------------------------------------------------------------------------------- | ENSRNOT00000061432 ENSRNOG00000039976 Ptk7 | |||||||||||
| ----------------------------------------------------------------------------------------------------- | ENSRNOT00000061431 ENSRNOG00000039976 Ptk7 | |||||||||||
| rat | ((....((((.(((((.((.(((((((......((((...((.(((.....))).))....))))))))))).)))))))..))))..)). | 0.430 -29.30 | ||||||||||
| rat | chromosome:9:9741405:9741495:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000061433|ENSRNOG00000039976 ## ENSRNOG00000039976|protein_coding|Ptk7|PTK7 protein tyrosine kinase 7 Gene [Source:MGI Symbol;Acc:MGI:1918711] |
block2550027 [novel_lenNOK_cloningHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.300 | no | no | 0.44/0.47 | 18/20/0.03 | 0.0 | 0.0 | 47 | 0 | 10 | 0 | 25 | 7 | 5arm | 1 | nd | 0.22 | 4 | 60 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --------------------------CCAGUGU---------------------------------------------------------------------- | 60 | miR-199a | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------CCCAGTGTTTAGTGATGT------------------------------------------------------------ | 18 | 11 | 6 | 1 | 4 | 2 | 4 | 4 | 7 | 11 | 3 | |
| -------------------------CCCAGTGTTTAGTGATGTG----------------------------------------------------------- | 19 | 1 | - | 1 | - | - | 1 | - | 2 | - | - | |
| -------------------------CCCAGTGTTTAGTGATGTGT---------------------------------------------------------- | 20 | - | - | - | - | - | - | 1 | - | 1 | - | |
| rat | tctgtcactgtactcagcttcctcaCCCAGTGTTTAGTGATGTgtgtttctaggaaacttgtacattattctaggctttaaggcttttgttgaatagaaatag | |||||||||||
| ******************************************************************************************************* | ||||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000017613 ENSRNOG00000012733 NP_001101708.1 | |||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000030949 ENSRNOG00000012733 NP_001101708.1 | |||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000017253 ENSRNOG00000012733 NP_001101708.1 | |||||||||||
| rat | .((((..((((..(((((.......((....(((((((((((((.(((((...)))))...)))))))..)))))).....)).....)))))))))..)))) | 0.640 -19.70 | ||||||||||
| rat | chromosome:9:104821510:104821612:-1 | Same_strand|Intronic_coding|ENSRNOT00000017253|ENSRNOG00000012733 ## Same_strand|Boundary_non-coding|ENSRNOT00000044912|ENSRNOG00000012733 ## ENSRNOG00000012733|protein_coding|NP_001101708.1|ankyrin repeat domain 12 [Source:RefSeq_peptide;Acc:NP_001101708] |
block2678430 [novel_lenNOK_cloningHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.501 | no | no | 0.47/0.55 | 18/22/0.01 | 0.0 | 0.2 | 651 | 0 | 10 | 0 | 33 | 1 | 3arm | 2 | nd | 0.26 | 4 | 758 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ---------------------------------------------------------------------GGGAUCA-------------------------------------------- | 756 | novel | |||||||||
| seed | ----------------------------------------------------------------------GGAUCAA------------------------------------------- | 1 | novel | |||||||||
| seed | --------------------------------------------------------------------GGGGAUC--------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------GGGGATCAAACCAGAGAA---------------------------------- | 18 | 83 | 59 | 31 | 28 | 35 | 38 | 35 | 83 | 82 | 54 | |
| --------------------------------------------------------------------GGGGATCAAACCAGAGAAG--------------------------------- | 19 | 41 | 16 | 15 | 12 | 9 | 8 | 19 | 43 | 39 | 19 | |
| --------------------------------------------------------------------GGGGATCAAACCAGAGAAGC-------------------------------- | 20 | 1 | - | - | - | - | - | - | 1 | 1 | 1 | |
| --------------------------------------------------------------------GGGGATCAAACCAGAGAAGCA------------------------------- | 21 | - | - | - | - | - | 1 | - | - | - | 1 | |
| -------------------------------------------------------------------TGGGGATCAAACCAGAGAA---------------------------------- | 19 | - | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------GGGATCAAACCAGAGAAG--------------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------GGGGATCAAACCAGAGAAGCAA------------------------------ | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | ctgtaaatggttatgatctatctgacccaccagctatactctgtgtatctcacctaagcactctcactGGGGATCAAACCAGAGAAGcaatgggagtagagtttgagaccttaatgacac | |||||||||||
| ************************************************************************************************************************ | ||||||||||||
| rat | .(((....((((.(((....((((.((((...(((...(((((.((...((.((((...........))))))....))))))).)))..))))..))))..))).))))......))). | 0.880 -24.90 | ||||||||||
| rat | chromosome:X:26153828:26153947:-1 | intergenic |
block2931417 [novel_lenNOK_cloningHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.062 | no | no | 0.24/0.28 | 18/21/0.01 | 0.0 | 0.0 | 403 | 0 | 4 | 0 | 6 | 2 | 5arm | 1 | nd | 0.28 | 4 | 428 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------CUUUGGU--------------------------------------------- | 426 | miR-9 | |||
| seed | --------UUUGGUU-------------------------------------------- | 1 | novel | |||
| seed | ------UCUUUGG---------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T4S2 | |||
| ------TCTTTGGTTATCTTTAGT----------------------------------- | 18 | 232 | 171 | - | 1 | |
| ------TCTTTGGTTATCTTTAGTA---------------------------------- | 19 | 8 | 10 | 1 | - | |
| ------TCTTTGGTTATCTTTAGTAAA-------------------------------- | 21 | 1 | 1 | - | - | |
| ------TCTTTGGTTATCTTTAGTAA--------------------------------- | 20 | 1 | - | - | - | |
| -------CTTTGGTTATCTTTAGTA---------------------------------- | 18 | - | 1 | - | - | |
| -----TTCTTTGGTTATCTTTAGT----------------------------------- | 19 | - | 1 | - | - | |
| rat | aagtttTCTTTGGTTATCTTTAGTaaacactattatagaaagataaaaatagattctta | |||||
| *********************************************************** | ||||||
| rat | (((...(((....((((((((.((((......))))..))))))))....)))..))). | 1.000 -9.20 | ||||
| rat | chromosome:X:6183562:6183620:1 | intergenic |
block2325007 [novel_lenNOK_cloningHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.082 | no | no | 0.47/0.53 | 19/24/0.67 | 0.9 | 3.1 | 34 | 0 | 7 | 0 | 9 | 3 | 3arm | 1 | nd | 0.29 | 4 | 55 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ---------------------------------------------------------------------------CAGAGUC------------------------- | 32 | novel | ||||||
| seed | ------------------------------------------------------------------------GCCCAGA---------------------------- | 10 | novel | ||||||
| seed | --------------------------------------------------------------------------CCAGAGU-------------------------- | 7 | novel | ||||||
| seed | -------------------------------------------------------------------------CCCAGAG--------------------------- | 2 | novel | ||||||
| seed | ----------------------------------------------------------------------GUGCCCA------------------------------ | 2 | novel | ||||||
| seed | ----------------------------------------------------------------------------AGAGUCU------------------------ | 1 | novel | ||||||
| seed | ------------------------------------------------------------------------------AGUCUUU---------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T4S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------------------------CCAGAGTCTTTGAGTTAGCCTCAC--------- | 24 | 3 | 3 | 1 | 1 | - | 4 | 19 | |
| -----------------------------------------------------------------------TGCCCAGAGTCTTTGAGTT----------------- | 19 | 2 | - | - | - | - | - | 8 | |
| -------------------------------------------------------------------------CCCAGAGTCTTTGAGTTAG--------------- | 19 | - | - | - | - | - | - | 7 | |
| ------------------------------------------------------------------------GCCCAGAGTCTTTGAGTTAG--------------- | 20 | - | - | - | - | 1 | - | 1 | |
| ---------------------------------------------------------------------TGTGCCCAGAGTCTTTGAGT------------------ | 20 | - | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------------CCAGAGTCTTTGAGTTAGCCTCA---------- | 23 | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------------TGTGCCCAGAGTCTTTGAG------------------- | 19 | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------------CAGAGTCTTTGAGTTAGCCTCAC--------- | 23 | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------------------GAGTCTTTGAGTTAGCCTCAC--------- | 21 | - | - | - | - | - | - | 1 | |
| rat | gagatctgtgtcctttccctgcccccttcccatttttgatgctatctcattcttcacagtcacctctcctgTGCCCAGAGTCTTTGAGTTAGCCTCACgcagttatc | ||||||||
| *********************************************************************************************************** | |||||||||
| rat | ((...((((((..........................((.((((.((((((((.(((((.........)))))...))))....)))).)))).))))))))...)) | 0.430 -19.26 | |||||||
| rat | chromosome:8:72069916:72070022:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap (32 loci)
block97392 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.762 | no | no | 0.42/0.56 | 18/25/0.39 | 0.0 1.5 8.2 | 0.0 1.9 6.4 | 2 11 5 | 0 0 0 | 2 1 2 | 0 0 0 | 10 16 29 | 12 -3 -23 | 5arm 5arm_loop 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.21 0.36 0.56 | 2 3 9 | 18 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------GCUAGCA------------------------------------------------------------------- | 5 | novel | ||
| seed | -----------------------AGCAGUU---------------------------------------------------------------- | 4 | novel | ||
| seed | -----------GAUUCUC---------------------------------------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------GAGGUUG---------------------------------------------- | 2 | miR-672 | ||
| seed | ------------------------------GAGCCAA--------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------CUGAGGU------------------------------------------------ | 1 | novel | ||
| seed | ----------------------------------------UGAGGUU----------------------------------------------- | 1 | novel | ||
| seed | -------------------UGCUAGC-------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------CUUGCUA---------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T5S1 | T5S2 | |||
| ----------------------TAGCAGTTGAGCCAAATCTGA--------------------------------------------------- | 21 | - | 2 | - | |
| ----------------------TAGCAGTTGAGCCAAATCT----------------------------------------------------- | 19 | - | 2 | - | |
| ----------TGATTCTCTTGCTAGCAGT----------------------------------------------------------------- | 19 | - | 1 | 1 | |
| -------------------TGCTAGCAGTTGAGCCAAATCT----------------------------------------------------- | 22 | - | 2 | - | |
| ----------------------------------------TGAGGTTGAAGGACGTGGAAGGAC------------------------------ | 24 | - | 1 | - | |
| -------------------TGCTAGCAGTTGAGCCAAA-------------------------------------------------------- | 19 | - | 1 | - | |
| -----------------------------TGAGCCAAATCTGAGGTTGAAGGAC---------------------------------------- | 25 | - | 1 | - | |
| --------------------------------------TCTGAGGTTGAAGGACGTG------------------------------------- | 19 | 1 | - | - | |
| ------------------TTGCTAGCAGTTGAGCCAA--------------------------------------------------------- | 19 | - | 1 | - | |
| -------------------TGCTAGCAGTTGAGCCAA--------------------------------------------------------- | 18 | - | 1 | - | |
| ----------------TCTTGCTAGCAGTTGAGCCAAA-------------------------------------------------------- | 22 | - | 1 | - | |
| ---------------------------------------CTGAGGTTGAAGGACGTGGAAGGAC------------------------------ | 25 | - | 1 | - | |
| -------------------TGCTAGCAGTTGAGCCAAATCTGAG-------------------------------------------------- | 25 | - | 1 | - | |
| ----------------------------------------TGAGGTTGAAGGACGTGGAAGGA------------------------------- | 23 | - | 1 | - | |
| rat | aaggagttacTGATTCTCTTGCTAGCAGTTGAGCCAAATCTGAGGTTGAAGGACGTGGAAGGACttttcaagaggaaagccacaggaagacctt | ||||
| ********************************************************************************************** | |||||
| rat | ((((.....(((.((((((((..((.((((...(((..(((.........)))..)))...)))))).))))))))......))).....)))) | 0.470 -18.60 | |||
| rat | chromosome:10:92624618:92624711:1 | intergenic |
block194520 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.234 | no | no | 0.39/0.50 | 18/22/0.25 | 0.0 3.9 | 0.0 4.6 | 1 19 | 0 0 | 1 8 | 0 0 | 34 11 | -16 -7 | 5arm_loop_3arm 3arm | 2 3 | nd nd | 0.47 0.16 | 8 1 | 20 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | ------------------------------------------------AGUACAA------------------------- | 4 | novel | |||||||
| seed | ---------------------------------------------GAGAGUA---------------------------- | 3 | novel | |||||||
| seed | --------------------------------------------------UACAAGC----------------------- | 3 | novel | |||||||
| seed | ----------------------------------------------AGAGUAC--------------------------- | 2 | novel | |||||||
| seed | -----------------------------------------AGCUGAG-------------------------------- | 2 | novel | |||||||
| seed | ------------------------------------------GCUGAGA------------------------------- | 2 | novel | |||||||
| seed | -----------------------------------UCUGAAA-------------------------------------- | 1 | novel | |||||||
| seed | ---------------------------------------AAAGCUG---------------------------------- | 1 | miR-320 | |||||||
| seed | ----------------------------------------AAGCUGA--------------------------------- | 1 | novel | |||||||
| seed | --------------------------------------------UGAGAGU----------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------GTACAAGCAGTTAGGATGC------------ | 19 | 1 | 1 | - | 1 | - | - | - | - | |
| ---------------------------------------------GAGAGTACAAGCAGTTAGGA--------------- | 20 | - | - | - | - | - | - | 2 | - | |
| -----------------------------------------AGCTGAGAGTACAAGCAG--------------------- | 18 | - | - | - | - | - | - | - | 2 | |
| --------------------------------------------TGAGAGTACAAGCAGTTA------------------ | 18 | - | - | - | 2 | - | - | - | - | |
| -----------------------------------------------GAGTACAAGCAGTTAGGATGCC----------- | 22 | - | - | - | - | - | - | 2 | - | |
| -----------------------------------------------GAGTACAAGCAGTTAGGA--------------- | 18 | - | - | - | - | 1 | 1 | - | - | |
| --------------------------------------------TGAGAGTACAAGCAGTTAG----------------- | 19 | - | - | 1 | - | - | - | - | - | |
| -------------------------------------------CTGAGAGTACAAGCAGTT------------------- | 18 | 1 | - | - | - | - | - | - | - | |
| --------------------------------------GAAAGCTGAGAGTACAAGCAGT-------------------- | 22 | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------AAGCTGAGAGTACAAGCA---------------------- | 18 | - | 1 | - | - | - | - | - | - | |
| ----------------------------------------AAGCTGAGAGTACAAGCAG--------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------CTCTGAAAGCTGAGAGTAC--------------------------- | 19 | 1 | - | - | - | - | - | - | - | |
| ---------------------------------------AAAGCTGAGAGTACAAGC----------------------- | 18 | - | - | 1 | - | - | - | - | - | |
| rat | gctggacgcttttgggagtttcgcagtttgtggtCTCTGAAAGCTGAGAGTACAAGCAGTTAGGATGCCgcgtggaagcc | |||||||||
| ******************************************************************************** | ||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000001235 ENSRNOG00000000931 Sfrs8 | |||||||||
| rat | (((..((((.....((..(((.((.(((((((.((((........)))).))))))).)).)))...))))))...))). | 0.890 -24.00 | ||||||||
| rat | chromosome:12:28053326:28053405:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000041824|ENSRNOG00000000931 ## Same_strand|Intronic_non-coding|ENSRNOT00000001235|ENSRNOG00000000931 ## ENSRNOG00000000931|protein_coding|Sfrs8|splicing factor, arginine/serine-rich 8 Gene [Source:MGI Symbol;Acc:MGI:101760] |
block209370 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.064 | no | no | 0.32/0.53 | 19/24/0.67 | 0.0 1.6 0.0 | 1.0 2.8 1.5 | 2 8 2 | 0 0 0 | 2 1 2 | 0 0 0 | 28 14 6 | -14 -18 9 | 5arm_loop_3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.41 0.11 0.21 | 5 1 2 | 12 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------ACUCCAG------------------------------ | 3 | novel | |
| seed | ----------------------------------------AAAACUC--------------------------------- | 3 | novel | |
| seed | -----------------------------------------------------AAGGACC-------------------- | 2 | novel | |
| seed | -----------------------------UGUAGGG-------------------------------------------- | 2 | novel | |
| seed | --------------------------------------AGAAAAC----------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------GAAAACTCCAGAATAAGGAC--------------------- | 20 | - | 3 | |
| ------------------------------------------AACTCCAGAATAAGGACCTCACTC-------------- | 24 | - | 2 | |
| -------------------------------------TAGAAAACTCCAGAATAAG------------------------ | 19 | - | 2 | |
| ----------------------------------------------------TAAGGACCTCACTCCTGTG--------- | 19 | - | 1 | |
| ----------------------------TTGTAGGGGTAGAAAACTCCAGAA---------------------------- | 24 | - | 1 | |
| ----------------------------TTGTAGGGGTAGAAAACTCCAG------------------------------ | 22 | 1 | - | |
| ------------------------------------------AACTCCAGAATAAGGACCT------------------- | 19 | - | 1 | |
| ----------------------------------------------------TAAGGACCTCACTCCTGTGACA------ | 22 | 1 | - | |
| rat | gcaagaggatggggacggggctcactttTTGTAGGGGTAGAAAACTCCAGAATAAGGACCTCACTCCTGTGACAattgca | |||
| ******************************************************************************** | ||||
| rat | ((((....((((((..((((.((.((((((...(((((.....))))).))).)))))))))..)))))).....)))). | 0.960 -21.90 | ||
| rat | chromosome:12:5630568:5630647:1 | intergenic |
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