other hairpins
novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap (32 loci)
block1487702 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.262 | no | no | 0.48/0.63 | 19/25/0.33 | 2.3 1.9 | 3.7 2.7 | 3 11 | 0 0 | 2 1 | 0 0 | 24 13 | -16 -4 | 5arm_loop_3arm 3arm_loop | 1 1 | nd nd | 0.47 0.21 | 6 3 | 15 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------GAGUCAC------------------------------ | 5 | novel | |
| seed | -------------------------------------ACCUGAG---------------------------------- | 4 | novel | |
| seed | --------------------------------------------UCACUGG--------------------------- | 3 | novel | |
| seed | -------------------------AGAUCCU---------------------------------------------- | 2 | novel | |
| seed | --------------------------------CACCUAC--------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| ----------------------------------------TGAGTCACTGGCCCCTGAT------------------- | 19 | - | 5 | |
| -------------------------------------------GTCACTGGCCCCTGATAAAGTC------------- | 22 | - | 3 | |
| ------------------------------------TACCTGAGTCACTGGCCCC----------------------- | 19 | - | 3 | |
| ------------------------TAGATCCTCACCTACCTGAG---------------------------------- | 20 | 1 | - | |
| ------------------------TAGATCCTCACCTACCTGAGTCACT----------------------------- | 25 | - | 1 | |
| -------------------------------TCACCTACCTGAGTCACTG---------------------------- | 19 | - | 1 | |
| ------------------------------------TACCTGAGTCACTGGCCCCT---------------------- | 20 | - | 1 | |
| rat | aactctccagagagtcggggagcatagatcctcaccTACCTGAGTCACTGGCCCCTGATAAAGTCcttgtgaagatgt | |||
| ****************************************************************************** | ||||
| rat | .((((((((..(((((((((.((.(((...((((......))))...))))))))))))....))..)).)).)).)) | 0.660 -19.90 | ||
| rat | chromosome:3:115225088:115225165:1 | intergenic |
block1848559 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.118 | no | no | 0.58/0.63 | 19/26/0.17 | 0.0 0.0 0.0 3.5 | 0.0 0.0 0.0 0.5 | 1 1 5 2 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 1 7 13 22 | 16 9 4 -13 | 5arm 5arm 5arm 5arm_loop_3arm | 1 1 1 1 | nd nd nd nd | 0.26 0.40 0.37 0.45 | 3 5 5 8 | 12 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------GUGGCCU-------------------------------------------------------- | 6 | novel | |
| seed | -----------------------GGACGUU----------------------------------------------- | 1 | novel | |
| seed | ----------------GGCCUCU------------------------------------------------------ | 1 | novel | |
| seed | --CAGGUUG-------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------ACGGGAA---------------------------------------- | 1 | novel | |
| seed | ---------------UGGCCUC------------------------------------------------------- | 1 | novel | |
| seed | --------GUGUCUG-------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------------TGTGGCCTCTGGACGTTAC--------------------------------------------- | 19 | 1 | 5 | |
| -------TGTGTCTGTGGCCTCTGGAC-------------------------------------------------- | 20 | - | 1 | |
| -CCAGGTTGTGTCTGTGGCC--------------------------------------------------------- | 19 | - | 1 | |
| ----------------------TGGACGTTACGGGAACTGTCCCTCCC----------------------------- | 26 | - | 1 | |
| -----------------------------TACGGGAACTGTCCCTCCCT---------------------------- | 20 | - | 1 | |
| --------------GTGGCCTCTGGACGTTACG-------------------------------------------- | 19 | - | 1 | |
| ---------------TGGCCTCTGGACGTTACGG------------------------------------------- | 19 | - | 1 | |
| rat | tccaggttgtgtcTGTGGCCTCTGGACGTTACgggaactgtccctccctgaccggtggggtccgggcttatgtggat | |||
| ***************************************************************************** | ||||
| rat | ((((.((...(((((.((((((.....((((.((((........))))))))....)))))))))))..)).)))). | 0.980 -30.50 | ||
| rat | chromosome:5:79248383:79248459:1 | intergenic |
sblock10085 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.165 | no | no | 0.37/0.56 | 18/26/0.64 | 2.7 0.4 2.0 0.7 0.0 0.0 | 3.2 1.1 2.0 2.7 0.0 0.0 | 9 8 2 3 1 2 | 0 0 0 0 0 0 | 5 3 1 1 1 2 | 0 0 0 0 0 0 | 4 32 48 35 12 7 | 19 0 -15 -12 16 23 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm 3arm | 1 1 1 2 2 2 | nd nd nd nd nd nd | 0.35 0.28 0.60 0.58 0.19 0.21 | 3 6 12 11 1 1 | 33 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -----------------AGCAAAC---------------------------------------------------------------------------------------------- | 10 | novel | |||||
| seed | ------------------------------------GCAUUCA--------------------------------------------------------------------------- | 7 | novel | |||||
| seed | ----------------------------------------------------------GUGACAG----------------------------------------------------- | 2 | miR-542 | |||||
| seed | ---------------------------------------------------------------------------------------------GGUGGUU------------------ | 2 | novel | |||||
| seed | -----GCGAGGA---------------------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | -----------------------------------------------------AAGCUGU---------------------------------------------------------- | 1 | novel | |||||
| seed | --------------GAUAGCA------------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------GCAAACC--------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------GCUGCAU------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | ---GUGCGAG------------------------------------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | --------AGGAAAG------------------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------GUCUAAG-------------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------------GACAGAG--------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------------------------------------------------CACAGCU------------------------- | 1 | novel | |||||
| seed | ---------GGAAAGA------------------------------------------------------------------------------------------------------ | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T5S1 | T5S2 | |||
| ----------------TAGCAAACCATAGTCAGGCTG--------------------------------------------------------------------------------- | 21 | - | - | - | - | 4 | - | |
| -----------------------------------TGCATTCAGGGTGTGTCTAA--------------------------------------------------------------- | 20 | 1 | - | - | - | 2 | - | |
| -----------------------------------TGCATTCAGGGTGTGTCTA---------------------------------------------------------------- | 19 | - | - | - | - | 3 | - | |
| ----------------TAGCAAACCATAGTCAGGCTGC-------------------------------------------------------------------------------- | 22 | - | - | - | - | 3 | - | |
| ----TGCGAGGAAAGATAGCAAAC---------------------------------------------------------------------------------------------- | 20 | - | - | - | - | 2 | - | |
| --------------------------------------------------------------------------------------------TGGTGGTTATATCTGTTTG------- | 19 | - | - | 1 | - | 1 | - | |
| ----------------------------------------------------TAAGCTGTGACAGAGATGCT---------------------------------------------- | 20 | - | - | - | - | 1 | - | |
| ---------------------------------------------------------TGTGACAGAGATGCTTGGGGAAGCAC----------------------------------- | 26 | - | - | - | - | 1 | - | |
| ----------------TAGCAAACCATAGTCAGGC----------------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------------------TCACAGCTGGTGGTTATATCT------------ | 21 | - | - | - | - | 1 | - | |
| -------GAGGAAAGATAGCAAACCA-------------------------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| -----------------AGCAAACCATAGTCAGGCTG--------------------------------------------------------------------------------- | 20 | - | - | - | - | 1 | - | |
| ----------------TAGCAAACCATAGTCAGGCT---------------------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | |
| ---------------------------------------------------------TGTGACAGAGATGCTTGGG------------------------------------------ | 19 | - | - | - | - | 1 | - | |
| ----------------TAGCAAACCATAGTCAGG------------------------------------------------------------------------------------ | 18 | - | - | - | 1 | - | - | |
| ------------------------------------------------TGTCTAAGCTGTGACAGAGA-------------------------------------------------- | 20 | - | - | - | - | 1 | - | |
| -------------AGATAGCAAACCATAGTCAG------------------------------------------------------------------------------------- | 20 | - | 1 | - | - | - | - | |
| -----------------------------------TGCATTCAGGGTGTGTCTAAGC------------------------------------------------------------- | 22 | - | 1 | - | - | - | - | |
| --TGTGCGAGGAAAGATAGCAAACCA-------------------------------------------------------------------------------------------- | 24 | 1 | - | - | - | - | - | |
| --------AGGAAAGATAGCAAACCATAG----------------------------------------------------------------------------------------- | 21 | - | - | - | - | 1 | - | |
| -----------------------------------------------------------TGACAGAGATGCTTGGGG----------------------------------------- | 18 | - | - | - | - | 1 | - | |
| --------------------------------GGCTGCATTCAGGGTGTGTCTAAGC------------------------------------------------------------- | 25 | - | - | - | - | 1 | - | |
| rat | ggtgTGCGAGGAAAGATAGCAAACCATAGTCAGGCTGCATTCAGGGTGTGTCTAAgctgtgacagagatgcttggggaagcacactcacagctggtggttatatctgtttgggcttcc | |||||||
| ********************************************************************************************************************** | ||||||||
| rat | ((.((.((((...(((((...((((((.....(((((......((((((((((((((............))))))....)))))))).))))).)))))).))))).)))).))..)) | 0.710 -36.90 | ||||||
| rat | chromosome:6:122560650:122560767:-1 | intergenic |
sblock10548 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.323 | no | no | 0.50/0.65 | 18/22/0.58 | 2.7 3.2 0.0 | 3.7 4.5 0.0 | 3 8 1 | 0 0 0 | 3 5 1 | 0 0 0 | 16 10 5 | -12 -3 9 | 5arm_loop_3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.30 0.21 0.20 | 4 3 3 | 12 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -------------------------------------CCGCAGA-------------------------- | 4 | novel | ||||||
| seed | ----------------------------------CAGCCGC----------------------------- | 2 | novel | ||||||
| seed | ----------------------------------------CAGAUAU----------------------- | 1 | novel | ||||||
| seed | ------------------ACUUUGA--------------------------------------------- | 1 | novel | ||||||
| seed | ----------------------------------------------UGGAGUC----------------- | 1 | novel | ||||||
| seed | ------------------------------------------GAUAUGG--------------------- | 1 | novel | ||||||
| seed | ------------------------AGUUGGG--------------------------------------- | 1 | novel | ||||||
| seed | -----------------GACUUUG---------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S2 | T5S2 | |||
| ------------------------------------GCCGCAGATATGGAGTCCTG-------------- | 20 | - | - | 1 | 1 | - | - | - | |
| ---------------------------------------------ATGGAGTCCTGGCGTCCCGA----- | 20 | - | - | - | - | 1 | - | - | |
| ---------------------------------------GCAGATATGGAGTCCTGGC------------ | 19 | - | - | - | - | - | - | 1 | |
| ------------------------------------GCCGCAGATATGGAGTCC---------------- | 18 | 1 | - | - | - | - | - | - | |
| -----------------------GAGTTGGGTGACAGCCGCAGA-------------------------- | 21 | - | - | - | - | 1 | - | - | |
| ---------------------------------ACAGCCGCAGATATGGAGTCC---------------- | 21 | - | - | - | 1 | - | - | - | |
| ----------------GGACTTTGAGTTGGGTGACA---------------------------------- | 20 | - | - | - | 1 | - | - | - | |
| ------------------------------------GCCGCAGATATGGAGTCCT--------------- | 19 | - | - | - | 1 | - | - | - | |
| -----------------GACTTTGAGTTGGGTGACAGCC------------------------------- | 22 | - | 1 | - | - | - | - | - | |
| -----------------------------------------AGATATGGAGTCCTGGCGT---------- | 19 | - | - | - | - | - | 1 | - | |
| ---------------------------------ACAGCCGCAGATATGGAG------------------- | 18 | - | - | - | 1 | - | - | - | |
| rat | gtctttgactgtccttGGACTTTGAGTTGGGTGACAGCCGCAGATATGGAGTCCTGGCGTCCCGAaaggc | ||||||||
| ********************************************************************** | |||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000051488 ENSRNOG00000022301 | ||||||||
| rat | (((((((((.(((...((((((((..((((((....))).)))...)))))))).))))))...)))))) | 0.770 -21.50 | |||||||
| rat | chromosome:7:1376178:1376247:-1 | Same_strand|Intronic_coding|ENSRNOT00000051488|ENSRNOG00000022301 ## ENSRNOG00000022301|protein_coding|| |
sblock12287 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.138 | no | no | 0.47/0.58 | 19/21/0.31 | 3.6 1.0 | 3.0 1.0 | 5 8 | 0 0 | 2 3 | 0 0 | 18 16 | -12 -3 | 5arm_loop_3arm 3arm | 5 5 | nd nd | 0.33 0.21 | 6 2 | 13 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------GAGCCAU--------------------------- | 4 | novel | |||
| seed | -------------------------------------CUGAGCC----------------------------- | 4 | novel | |||
| seed | ----------------------CCUGUCG-------------------------------------------- | 2 | novel | |||
| seed | -------------------------GUCGGUU----------------------------------------- | 2 | novel | |||
| seed | -------------------CAUCCUG----------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------TCTGAGCCATAGTGAACAG------------------ | 19 | - | 1 | 3 | - | |
| --------------------------------------TGAGCCATAGTGAACAGGG---------------- | 19 | 1 | - | 3 | - | |
| ------------------------TGTCGGTTCCCTTCTGAGC------------------------------ | 19 | - | - | 1 | - | |
| ---------------------TCCTGTCGGTTCCCTTCTGAG------------------------------- | 21 | - | - | 1 | - | |
| ------------------TCATCCTGTCGGTTCCCTTCT---------------------------------- | 21 | - | - | - | 1 | |
| ---------------------TCCTGTCGGTTCCCTTCTGA-------------------------------- | 20 | - | - | 1 | - | |
| ------------------------TGTCGGTTCCCTTCTGAGCCA---------------------------- | 21 | - | - | 1 | - | |
| rat | ccactcacgtgtttgcacTCATCCTGTCGGTTCCCTTCTGAGCCATAGTGAACAGGGcaaccataagcctgga | |||||
| ************************************************************************* | ||||||
| rat | (((.....(((.((((.((..((((((.(((((......))))))))).))..)).)))).))).....))). | 0.550 -18.60 | ||||
| rat | chromosome:9:104981695:104981767:-1 | intergenic |
sblock3323 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.170 | no | no | 0.19/0.67 | 19/26/0.26 | 0.0 1.4 1.2 0.0 | 0.0 3.0 1.2 0.0 | 10 7 4 7 | 0 0 0 0 | 1 3 1 5 | 0 0 0 0 | 4 13 41 37 | 30 12 -16 -7 | 5arm 5arm 3arm_loop 3arm_loop | 1 1 1 1 | nd nd nd nd | 0.26 0.19 0.58 0.37 | 4 3 10 6 | 38 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ------------------------------------------------------------GCAACAG------------------------------------------------ | 14 | novel | |||||
| seed | -----CCGAGGU------------------------------------------------------------------------------------------------------- | 10 | novel | |||||
| seed | ---------------AGAGAUU--------------------------------------------------------------------------------------------- | 4 | novel | |||||
| seed | --------------UAGAGAU---------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | --CUUCCGA---------------------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ------------------------------------------------------AAACAUG------------------------------------------------------ | 2 | novel | |||||
| seed | ---------------------------------------------------CCCAAAC--------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------UAUAUUG------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ----UCCGAGG-------------------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------------------ACAUGCA---------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T5S1 | |||
| ----TCCGAGGTCTTAGAGATTT-------------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | 10 | |
| -----------------------------------------------------------TGCAACAGGGCTGGGACCA------------------------------------- | 19 | - | 1 | - | - | 1 | 7 | |
| --------------TAGAGATTTTATATTGTTC---------------------------------------------------------------------------------- | 19 | - | - | - | - | - | 2 | |
| -----------------------------------------------------CAAACATGCAACAGGGCTG------------------------------------------- | 19 | - | - | - | - | - | 2 | |
| -----------------------------------------------------------TGCAACAGGGCTGGGACCAG------------------------------------ | 20 | 1 | - | - | - | - | 1 | |
| -ACTTCCGAGGTCTTAGAGATTTT------------------------------------------------------------------------------------------- | 23 | - | - | - | - | - | 2 | |
| -----------------------------------------------------------TGCAACAGGGCTGGGACCAGG----------------------------------- | 21 | - | - | - | - | - | 1 | |
| ----------------------TTATATTGTTCATTCTTTG-------------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | |
| ---TTCCGAGGTCTTAGAGATT--------------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| -----------------------------------------------------------TGCAACAGGGCTGGGACCAGGGTG-------------------------------- | 24 | - | - | 1 | - | - | - | |
| -----------------------------------------------------------TGCAACAGGGCTGGGACCAGGGT--------------------------------- | 23 | - | - | - | - | - | 1 | |
| -------------TTAGAGATTTTATATTGTTCATTCTT---------------------------------------------------------------------------- | 26 | - | - | - | - | - | 1 | |
| -------------TTAGAGATTTTATATTGTTCA--------------------------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | |
| --------------TAGAGATTTTATATTGTTCATTCT----------------------------------------------------------------------------- | 24 | - | - | - | - | - | 1 | |
| -------------------------------------------------------AACATGCAACAGGGCTGGG----------------------------------------- | 19 | - | - | - | - | - | 1 | |
| --------------TAGAGATTTTATATTGTTCA--------------------------------------------------------------------------------- | 20 | - | - | - | 1 | - | - | |
| --------------------------------------------------CCCCAAACATGCAACAGGG---------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| rat | cactTCCGAGGTCTTAGAGATTTtatattgttcattctttgggctcccaaccccaaacaTGCAACAGGGCTGGGACCAgggtggaccaggcagggatctcccggggctgagagtg | |||||||
| ******************************************************************************************************************* | ||||||||
| rat | (((((....((((((.((((((((...(((((((((((...((.(((((.(((.............))).)))))))))))))))).))...))))))))..))))))..))))) | 0.990 -38.92 | ||||||
| rat | chromosome:12:44288705:44288819:-1 | intergenic |
sblock5526 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.263 | no | no | 0.35/0.62 | 19/25/0.69 | 0.0 0.0 1.3 | 0.0 0.0 0.3 | 3 1 6 | 0 0 0 | 2 1 3 | 0 0 0 | 16 42 40 | 15 -11 -3 | 5arm 5arm_loop_3arm 3arm_loop | 1 1 1 | nd nd nd | 0.29 0.38 0.58 | 2 8 11 | 16 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------------------AACUGGA------------------------------------------------------- | 6 | novel | |||
| seed | --------------------------------------------------------------GGAUGGA--------------------------------------------------- | 4 | novel | |||
| seed | -----------------CCACUGA------------------------------------------------------------------------------------------------ | 3 | novel | |||
| seed | -------------------------------------------AAGACCC---------------------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------CUAACUG--------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------AAUCUAA------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S1 | |||
| -------------------------------------------------------------TGGATGGATAGCAAGTCTT---------------------------------------- | 19 | - | - | - | 4 | |
| ---------------------------------------------------------TAACTGGATGGATAGCAAGTCT----------------------------------------- | 22 | 1 | - | 1 | 2 | |
| ----------------TCCACTGATGCCCCTGACCTG----------------------------------------------------------------------------------- | 21 | - | 1 | - | 2 | |
| ----------------------------------------------------AAATCTAACTGGATGGATAG------------------------------------------------ | 20 | - | - | - | 1 | |
| ---------------------------------------------------------TAACTGGATGGATAGCAAGTCTTAG-------------------------------------- | 25 | 1 | - | - | - | |
| ------------------------------------------TAAGACCCAGAAATCTAACTG--------------------------------------------------------- | 21 | 1 | - | - | - | |
| -------------------------------------------------------TCTAACTGGATGGATAGCAAGTC------------------------------------------ | 23 | 1 | - | - | - | |
| ---------------------------------------------------------TAACTGGATGGATAGCAAGTC------------------------------------------ | 21 | - | - | - | 1 | |
| rat | gaatttgttgacttggTCCACTGATGCCCCTGACCTGgaacctaagacccagaaatcTAACTGGATGGATAGCAAGTCTTagcgggagggagtctgtgggtaaccgaatctcctgggtca | |||||
| ************************************************************************************************************************ | ||||||
| rat | ((.......((.(((((((((.(((..((((..((((....(((((((((((........))))...........))))))))))))))).))).))))...))))).)).......)). | 0.710 -34.74 | ||||
| rat | chromosome:18:63559642:63559761:-1 | intergenic |
sblock598 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.046 | no | no | 0.29/0.52 | 18/24/0.50 | 0.0 0.0 2.9 0.0 | 0.0 0.0 2.6 0.0 | 1 2 8 1 | 0 0 0 0 | 1 1 3 1 | 0 0 0 0 | 5 14 35 9 | 25 16 -15 21 | 5arm 5arm 3arm_loop 3arm | 2 2 3 3 | nd nd nd nd | 0.37 0.37 0.52 0.19 | 3 3 7 2 | 12 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------GGAUAUU-------------------------------------------------------- | 4 | novel | ||
| seed | ---------------UCGCAAU------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -----------------------------------------------------CUGGAUA---------------------------------------------------------- | 2 | novel | ||
| seed | -------------------------------------------------------------UGCUUAG-------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------------------------------------CACAGAU---------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------UUGCUUA--------------------------------------------------- | 1 | novel | ||
| seed | ------GUCUUCC--------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ------------------------------------------------------TGGATATTGCTTAGCTGAT--------------------------------------------- | 19 | 1 | - | 1 | |
| ----------------------------------------------------TCTGGATATTGCTTAGCTGATGTG------------------------------------------ | 24 | - | 1 | 1 | |
| --------------TTCGCAATCATGATTTGAA------------------------------------------------------------------------------------- | 19 | - | - | 2 | |
| ----------------------------------------------------------------------------------------TCACAGATCATTATGTAATGA--------- | 21 | - | - | 1 | |
| -----------------------------------------------------------ATTGCTTAGCTGATGTGCACC-------------------------------------- | 21 | - | - | 1 | |
| ------------------------------------------------------------TTGCTTAGCTGATGTGCACCACC----------------------------------- | 23 | - | - | 1 | |
| -----TGTCTTCCATTCGCAATCA---------------------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| ------------------------------------------------------TGGATATTGCTTAGCTGA---------------------------------------------- | 18 | - | - | 1 | |
| ------------------------------------------------------TGGATATTGCTTAGCTGATGTG------------------------------------------ | 22 | - | - | 1 | |
| rat | gtctcTGTCTTCCATTCGCAATCATGATTTGAAttcttgcacacacagcaccTCTGGATATTGCTTAGCTGATGTGCACCACCtcaccTCACAGATCATTATGTAATGAgaggagaca | ||||
| ********************************************************************************************************************** | |||||
| rat | ((((((.(((..((((.(((...((((((((......((((((..((((..................)))).)))))).............))))))))..)))))))))))))))). | 0.720 -27.88 | |||
| rat | chromosome:1:102014322:102014439:-1 | intergenic |
sblock616 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.032 | no | no | 0.29/0.52 | 18/25/0.50 | 0.0 0.3 0.0 2.9 0.0 | 0.0 2.0 0.0 2.6 0.0 | 1 3 1 8 1 | 0 0 0 0 0 | 1 2 1 3 1 | 0 0 0 0 0 | 5 14 29 35 9 | 25 10 -5 -15 21 | 5arm 5arm 5arm_loop 3arm_loop 3arm | 2 2 2 3 3 | nd nd nd nd nd | 0.37 0.37 0.52 0.48 0.19 | 3 3 6 7 2 | 14 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------GGAUAUU-------------------------------------------------------- | 4 | novel | ||
| seed | ---------------UCGCAAU------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -----------------------------------------------------CUGGAUA---------------------------------------------------------- | 2 | novel | ||
| seed | ----------------CGCAAUC----------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------GAAUUUU--------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------UGCUUAG-------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------------------------------------CACAGAU---------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------UUGCUUA--------------------------------------------------- | 1 | novel | ||
| seed | ------GUCUUCC--------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ------------------------------------------------------TGGATATTGCTTAGCTGAT--------------------------------------------- | 19 | 1 | - | 1 | |
| ----------------------------------------------------TCTGGATATTGCTTAGCTGATGTG------------------------------------------ | 24 | - | 1 | 1 | |
| --------------TTCGCAATCATGATTTGAA------------------------------------------------------------------------------------- | 19 | - | - | 2 | |
| ----------------------------------------------------------------------------------------TCACAGATCATTATGTAATGA--------- | 21 | - | - | 1 | |
| -----------------------------TGAATTTTGGCACACACAGCACCTC---------------------------------------------------------------- | 25 | - | - | 1 | |
| -----------------------------------------------------------ATTGCTTAGCTGATGTGCACC-------------------------------------- | 21 | - | - | 1 | |
| ---------------TCGCAATCATGATTTGAATTTTGG------------------------------------------------------------------------------- | 24 | - | 1 | - | |
| ------------------------------------------------------------TTGCTTAGCTGATGTGCACCACC----------------------------------- | 23 | - | - | 1 | |
| -----TGTCTTCCATTCGCAATCA---------------------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| ------------------------------------------------------TGGATATTGCTTAGCTGA---------------------------------------------- | 18 | - | - | 1 | |
| ------------------------------------------------------TGGATATTGCTTAGCTGATGTG------------------------------------------ | 22 | - | - | 1 | |
| rat | gtctcTGTCTTCCATTCGCAATCATGATTTGAATTTTGGCACACACAGCACCTCTGGATATTGCTTAGCTGATGTGCACCACCtcaccTCACAGATCATTATGTAATGAgaggagaca | ||||
| ********************************************************************************************************************** | |||||
| rat | ((((((.(((..((((.(((...((((((((.....(((..((((((((..................)))).))))..)))..........))))))))..)))))))))))))))). | 0.770 -28.83 | |||
| rat | chromosome:1:102925196:102925313:-1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_Multihit_bulgeHIGH (32 loci)
sblock10010 [novel_lenNOK_multiarm_DicerNOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.041 | no | no | 0.53/0.65 | 19/20/0.67 | 0.0 0.0 | 0.0 0.5 | 1 2 | 0 0 | 1 2 | 0 0 | 15 11 | 16 26 | 5arm 3arm | 7 13 | nd nd | 0.25 0.45 | 4 6 | 3 | 2 | 7 | 2 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------------------CCCUGAA----------------------- | 2 | novel | |
| seed | ----------------UGGGUCC------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| ---------------GTGGGTCCTGGGAGAGCATG------------------------------------------------------------------------------ | 20 | - | 1 | |
| ----------------------------------------------------------------------------------TCCCTGAAGTCTCTGAACC------------ | 19 | 1 | - | |
| ----------------------------------------------------------------------------------TCCCTGAAGTCTCTGAACCC----------- | 20 | - | 1 | |
| rat | gctgagctgtcacggGTGGGTCCTGGGAGAGCATGgcgactccagtgtgcctgtgtggagtggtgtgaacgtcgccggcgtcTCCCTGAAGTCTCTGAACCCacagctgggca | |||
| ***************************************************************************************************************** | ||||
| rat | (((.((((((...(((((((....((((((((.(((((((((((.((..((.....))..)).)).))..))))))))).))))))......)))...)))))))))).))). | 0.980 -51.40 | ||
| rat | chromosome:6:78687182:78687294:-1 | intergenic |
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