other hairpins
novel_lenNOK_Multihit_5varHIGH (31 loci)
block1874372 [novel_lenNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.179 | no | no | 0.40/0.44 | 18/20/0.50 | 1.5 | 0.5 | 2 | 0 | 2 | 0 | 9 | 9 | 3arm | 18 | nd | 0.30 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------GUCACAG---------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------ACAGAAU------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S2 | |||
| -----------------------------------------------------------------CACAGAATTTTGAGACCC--------- | 18 | 1 | - | |
| --------------------------------------------------------------TGTCACAGAATTTTGAGACC---------- | 20 | - | 1 | |
| rat | gttttaaattattagttttcaaaatcagtacatttgtaatggaaccaacttgaccaaaactaTGTCACAGAATTTTGAGACCCattaaaaca | |||
| ******************************************************************************************** | ||||
| rat | (((((((.........((((((((((.((((((..((..(((...........)))..)).)))).)).)).))))))))....))))))). | 0.480 -12.22 | ||
| rat | chromosome:5:134660971:134661062:1 | intergenic |
block2083020 [novel_lenNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.684 | no | no | 0.56/0.68 | 19/25/0.40 | 1.8 | 1.0 | 5 | 0 | 3 | 0 | 6 | 8 | 3arm | 54 | nd | 0.26 | 3 | 5 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------UGACAUG------------------------ | 3 | novel | ||
| seed | ---------------------------------------------------------------UCUGACA-------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------------CCGCCUG----------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T4S1 | T5S1 | |||
| ----------------------------------------------------------------CTGACATGCCGCCTGGAGAAACC--------- | 23 | 2 | - | - | |
| ----------------------------------------------------------------CTGACATGCCGCCTGGAGAAACCTG------- | 25 | 1 | - | - | |
| -----------------------------------------------------------------------GCCGCCTGGAGAAACCTGC------ | 19 | - | - | 1 | |
| --------------------------------------------------------------ATCTGACATGCCGCCTGGAGAAACC--------- | 25 | - | 1 | - | |
| rat | gctgaacgggaagctcactggcatggccttccgtgttcctccccccagtgtatccgctgtagATCTGACATGCCGCCTGGAGAAACCTGCcaagta | ||||
| ************************************************************************************************ | |||||
| rat | (((...((((...(((...(((..(((.....(((((........(((((....))))).......)))))))))))..)))...))))...))). | 0.950 -25.56 | |||
| rat | chromosome:7:10406550:10406645:-1 | intergenic |
block1076773 [novel_lenNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.467 | no | no | 0.56/0.61 | 23/25/0.60 | 1.2 | 1.0 | 5 | 0 | 2 | 0 | 15 | 6 | 3arm | 48 | nd | 0.26 | 3 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------------UGACAUG-------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------------------GAUCUGA------------------------------------ | 1 | novel | |
| seed | --------------------------------------------------------------------------UCUGACA---------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T4S1 | |||
| ---------------------------------------------------------------------------CTGACATGCCGCCTGGAGAAACC----------------- | 23 | 2 | - | |
| -----------------------------------------------------------------------GGATCTGACATGCCGCCTGGAGAA-------------------- | 24 | 1 | - | |
| ---------------------------------------------------------------------------CTGACATGCCGCCTGGAGAAACCTG--------------- | 25 | 1 | - | |
| -------------------------------------------------------------------------ATCTGACATGCCGCCTGGAGAAACC----------------- | 25 | - | 1 | |
| rat | gtcatcccagagctgaacgggaagctcactggcatggccttctgtgttcctacccccaatgtatccgctgtGGATCTGACATGCCGCCTGGAGAAACCTGacaagcatgatgaca | |||
| ******************************************************************************************************************* | ||||
| rat | ((((((.....(((...((((...(((...(((..(((.....(((((.....((.((.((....)).)).))....)))))))))))..)))...))))...)))..)))))). | 0.430 -31.50 | ||
| rat | chromosome:20:30228374:30228488:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH (31 loci)
block713254 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.833 | no | no | 0.33/0.58 | 18/25/0.63 | 0.1 3.9 1.8 0.0 0.0 0.0 | 1.1 2.0 2.7 0.0 0.0 0.0 | 7 8 6 1 16 1 | 0 0 0 0 0 0 | 4 3 2 1 3 1 | 0 0 0 0 0 0 | 37 43 58 30 23 19 | 3 -6 -20 2 8 13 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm 3arm 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.48 0.39 0.29 0.37 0.40 0.32 | 5 5 4 2 5 5 | 41 | 6 | 12 | 0 |
| reads | miRBase family seed | |||||||
| seed | ------------------------------------------------------------------------------GACCUCU----------------------------------- | 17 | novel | |||||
| seed | --------------------------------------ACCACUG--------------------------------------------------------------------------- | 6 | novel | |||||
| seed | --------------------------------------------GGAGUUG--------------------------------------------------------------------- | 4 | novel | |||||
| seed | --------------------------------------------------------------AGACGUA--------------------------------------------------- | 3 | novel | |||||
| seed | -----------------------------------------------------------CUUAGAC------------------------------------------------------ | 2 | novel | |||||
| seed | ----------------------------------------------------CGCUUUU------------------------------------------------------------- | 2 | novel | |||||
| seed | --------------------------------------------------GUCGCUU--------------------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------------------------------ACCUCUG---------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------------------------------------------CUGCCAC------------------------------ | 1 | novel | |||||
| seed | -------------------------------------------------------------UAGACGU---------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------CCACUGG-------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------------GCUUUUC------------------------------------------------------------ | 1 | novel | |||||
| seed | ------------------------------------------------------------------------AAGCAUG----------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T5S1 | |||
| -----------------------------------------------------------------------------TGACCTCTGCCACCCAAAGA----------------------- | 20 | 4 | - | 1 | - | - | 12 | |
| -------------------------------------TACCACTGGAGTTGTCGCTTTTCTT---------------------------------------------------------- | 25 | - | - | - | 1 | 1 | 3 | |
| -------------------------------------------TGGAGTTGTCGCTTTTCTTAGAC------------------------------------------------------ | 23 | - | - | - | - | - | 3 | |
| ----------------------------------------------------------TCTTAGACGTATTTAAGCATG----------------------------------------- | 21 | - | - | - | - | - | 2 | |
| -------------------------------------------------TGTCGCTTTTCTTAGACGT---------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| ----------------------------------------------------CGCTTTTCTTAGACGTATT------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| -------------------------------------------------------------TAGACGTATTTAAGCATG----------------------------------------- | 18 | - | - | - | - | - | 1 | |
| --------------------------------------ACCACTGGAGTTGTCGCT---------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | |
| ----------------------------------------------------------------------------------TCTGCCACCCAAAGATTTC------------------- | 19 | - | - | - | - | - | 1 | |
| -------------------------------------------TGGAGTTGTCGCTTTTCTTAGACGT---------------------------------------------------- | 25 | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------------------GACCTCTGCCACCCAAAGA----------------------- | 19 | - | - | - | - | - | 1 | |
| -------------------------------------TACCACTGGAGTTGTCGCTTTTC------------------------------------------------------------ | 23 | - | - | - | - | - | 1 | |
| ---------------------------------------------------TCGCTTTTCTTAGACGTAT-------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| -------------------------------------------------------------TAGACGTATTTAAGCATGACCTCT----------------------------------- | 24 | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------------TAAGCATGACCTCTGCCAC------------------------------ | 19 | - | - | - | - | - | 1 | |
| -------------------------------------------------------------TAGACGTATTTAAGCATGACCTC------------------------------------ | 23 | - | 1 | - | - | - | - | |
| ---------------------------------------------------TCGCTTTTCTTAGACGTA--------------------------------------------------- | 18 | 1 | - | - | - | - | - | |
| ------------------------------------------------------------TTAGACGTATTTAAGCATGACCTC------------------------------------ | 24 | - | - | - | - | - | 1 | |
| rat | tgctgtgatatggtgactcactgggcaaggaattgtttaccactggagttgtcgcttttcttagacgtatttaagcaTGACCTCTGCCACCCAAAGAtttccaagcaaagtggggacagt | |||||||
| ************************************************************************************************************************ | ||||||||
| rat | .(((((..........((((((..((..((((..((((.....(((((..((((.....((((((....))))))..))))..)).))).....))))))))..))..)))))).))))) | 0.760 -25.90 | ||||||
| rat | chromosome:18:63579633:63579752:-1 | intergenic |
sblock10675 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.080 | no | no | 0.16/0.38 | 19/24/0.19 | 0.0 0.0 2.5 0.0 0.0 | 0.0 0.0 0.5 0.0 0.0 | 4 1 2 4 1 | 0 0 0 0 0 | 2 1 2 2 1 | 0 0 0 0 0 | 10 28 29 18 8 | 18 -5 -6 10 20 | 5arm 5arm_loop 3arm 3arm 3arm | 7 7 7 7 7 | nd nd nd nd nd | 0.21 0.50 0.32 0.42 0.37 | 4 6 4 4 3 | 16 | 3 | -7 | -11 |
| reads | miRBase family seed | ||||
| seed | -----------GGUGUUU---------------------------------------------------------------------------------- | 5 | novel | ||
| seed | ----------------------------------------------------------------GUCACUA----------------------------- | 4 | novel | ||
| seed | ----------------------------------------------------------------------AUUUGCA----------------------- | 2 | novel | ||
| seed | ------------------------------------------------UCAAUAC--------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------------------------------GCACAAA------------------- | 1 | novel | ||
| seed | -----------------------------------------------------ACAUUAU---------------------------------------- | 1 | novel | ||
| seed | -----------------------------AGACAAA---------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------CACUAUU--------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ----------TGGTGTTTTATGTTTGCAT----------------------------------------------------------------------- | 19 | - | 1 | 4 | |
| ---------------------------------------------------------------TGTCACTATTTGCACAAAT------------------ | 19 | - | - | 4 | |
| ---------------------------------------------------------------------TATTTGCACAAATATTTTT------------ | 19 | 1 | - | 1 | |
| -----------------------------------------------TTCAATACATTATGGCTGTCACT------------------------------ | 23 | - | - | 1 | |
| -------------------------------------------------------------------------TGCACAAATATTTTTACCC-------- | 19 | - | - | 1 | |
| ----------------------------------------------------TACATTATGGCTGTCACTA----------------------------- | 19 | 1 | - | - | |
| ----------------------------TAGACAAAGTCAAGGGTGTTTCAA------------------------------------------------ | 24 | - | - | 1 | |
| -----------------------------------------------------------------TCACTATTTGCACAAATATTTTT------------ | 23 | - | - | 1 | |
| rat | gaggatattcTGGTGTTTTATGTTTGCATagacaaagtcaagggtgtttcaatacattatggcTGTCACTATTTGCACAAATatttttaccccatcttcc | ||||
| **************************************************************************************************** | |||||
| rat | ((((((.....((((....((((((((((((....(((((..(((((......))))).)))))....)))..))))..)))))...))))..)))))). | 0.990 -21.40 | |||
| rat | chromosome:7:18782338:18782437:-1 | intergenic |
sblock11080 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.873 | no | no | 0.63/0.83 | 18/23/0.12 | 0.0 0.5 1.2 | 0.0 0.7 2.5 | 1 12 4 | 0 0 0 | 1 6 3 | 0 0 0 | 16 26 38 | 22 9 -1 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.28 0.32 0.26 | 2 4 4 | 17 | 6 | -10 | -8 |
| reads | miRBase family seed | |||||||
| seed | -----------------------------GGGACGG------------------------------------------------------------------------------------ | 9 | novel | |||||
| seed | ---------------------------CCGGGAC-------------------------------------------------------------------------------------- | 3 | novel | |||||
| seed | ------------------------------------------------------------CCGGAGU----------------------------------------------------- | 2 | novel | |||||
| seed | -----------------UUAGCCG------------------------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | ---------------------------------------------------------------GAGUGCA-------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------------------------GGAGUGC--------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S2 | |||
| ----------------------------CGGGACGGTTCTGGGCTT-------------------------------------------------------------------------- | 18 | 1 | 1 | - | 3 | 2 | - | |
| --------------------------GCCGGGACGGTTCTGGGC---------------------------------------------------------------------------- | 18 | - | - | 2 | - | - | 1 | |
| ----------------------------CGGGACGGTTCTGGGCTTT------------------------------------------------------------------------- | 19 | 1 | - | - | 1 | - | - | |
| ----------------GTTAGCCGGAGCCGGGAC-------------------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| -----------------------------------------------------------GCCGGAGTGCAGAGCCGCC------------------------------------------ | 19 | 1 | - | - | - | - | - | |
| -------------------------------------------------------------CGGAGTGCAGAGCCGCCCG---------------------------------------- | 19 | - | 1 | - | - | - | - | |
| --------------------------------------------------------------GGAGTGCAGAGCCGCCCGCC-------------------------------------- | 20 | 1 | - | - | - | - | - | |
| -----------------------------------------------------------GCCGGAGTGCAGAGCCGCCCGCC-------------------------------------- | 23 | - | - | - | 1 | - | - | |
| rat | gcagccggagcctattGTTAGCCGGAGCCGGGACGGTTCTGGGCTTTgctgcccggggaGCCGGAGTGCAGAGCCGCCCGCCccccgccgcctgccggccggcccacacaccctgcagcc | |||||||
| ************************************************************************************************************************ | ||||||||
| rat | ((.((.((........((..(((((.((((((..(((....((((((((.((((((....)))).))))))))))....))).))))..))...)))))..))........)).)).)). | 0.460 -52.89 | ||||||
| rat | chromosome:7:139197742:139197861:-1 | intergenic ## {Repeats: GC_rich 24 33 -1 class=Low_complexity,GC_rich 1 33 -1 class=Low_complexity,dust 139197780 139197789 0 class=dust} |
sblock12472 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.094 | no | no | 0.37/0.43 | 18/24/0.40 | 0.8 0.0 2.0 | 0.5 0.0 2.0 | 6 1 3 | 0 0 0 | 2 1 2 | 0 0 0 | 20 29 21 | 4 -4 -21 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.39 0.38 0.21 | 3 4 5 | 10 | 3 | 0 | 5 |
| reads | miRBase family seed | ||||
| seed | -----------------------ACAAUGA---------------------------------------------------------------- | 3 | novel | ||
| seed | -------------------------AAUGAUG-------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------UGCUUUU--------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------CUUUUUG------------------------------------- | 1 | novel | ||
| seed | ---------------------GAACAAU------------------------------------------------------------------ | 1 | novel | ||
| seed | ------------------------------UGGUCAA--------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------UGUGCUU----------------------------------------- | 1 | miR-218 | ||
| seed | ------------------------CAAUGAU--------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T3S1 | T3S2 | |||
| ----------------------AACAATGATGGTCAAACGA----------------------------------------------------- | 19 | - | 3 | - | |
| --------------------GGAACAATGATGGTCAAAC------------------------------------------------------- | 19 | 1 | - | - | |
| ------------------------CAATGATGGTCAAACGAA---------------------------------------------------- | 18 | - | 1 | - | |
| ---------------------------------------------GTGTGCTTTTTGTTTCCTCTAC--------------------------- | 22 | - | - | 1 | |
| -----------------------------ATGGTCAAACGAAAGAGTGTG-------------------------------------------- | 21 | - | 1 | - | |
| -----------------------ACAATGATGGTCAAACGA----------------------------------------------------- | 18 | - | 1 | - | |
| -------------------------------------------------GCTTTTTGTTTCCTCTACTTTTCC--------------------- | 24 | - | - | 1 | |
| -----------------------------------------------GTGCTTTTTGTTTCCTCTAC--------------------------- | 20 | 1 | - | - | |
| rat | gaacggtgcaccccctcgggGGAACAATGATGGTCAAACGAAAGAGTGTGCTTTTTGTTTCCTCTACTTTTCCcttgcgggttttctgagttca | ||||
| ********************************************************************************************** | |||||
| >>>>>>>>>>>>>>>>>>>>>................................................................................... | ENSRNOT00000054246 ENSRNOG00000036545 U2 | ||||
| rat | ((((........(((.((((((((....((.((..((((.((((((....)))))))))))))).....)))))))).)))........)))). | 0.980 -28.29 | |||
| rat | chromosome:9:71406661:71406754:1 | intergenic |
sblock1908 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.025 | no | no | 0.43/0.56 | 19/25/0.44 | 0.4 1.2 0.0 | 0.0 5.0 0.0 | 8 4 1 | 0 0 0 | 2 3 1 | 0 0 0 | 29 30 12 | 1 -4 19 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.30 0.36 0.40 | 5 5 4 | 16 | 3 | -5 | 0 |
| reads | miRBase family seed | ||||
| seed | -------------------------------AGAGAAA-------------------------------------------------------------------------------- | 5 | novel | ||
| seed | -----------------------------------------------------------CCUAUGA---------------------------------------------------- | 3 | novel | ||
| seed | ------------------------------CAGAGAA--------------------------------------------------------------------------------- | 3 | novel | ||
| seed | ---------------------------UCUCAGA------------------------------------------------------------------------------------ | 3 | novel | ||
| seed | ----------------------------------------------------------------------------------AAGUUUG----------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------GAGAGCU----------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S1 | |||
| ------------------------------CAGAGAAAAGTGGGTCTCA--------------------------------------------------------------------- | 19 | - | - | 5 | |
| -----------------------------TCAGAGAAAAGTGGGTCTCA--------------------------------------------------------------------- | 20 | - | - | 3 | |
| ----------------------------------------------------------TCCTATGAGAGCTACTGGAAGCTGA----------------------------------- | 25 | 1 | 1 | - | |
| --------------------------TTCTCAGAGAAAAGTGGGTCTCA--------------------------------------------------------------------- | 23 | 1 | - | 1 | |
| ---------------------------------------------------------------TGAGAGCTACTGGAAGCTGAAGTTT------------------------------ | 25 | 1 | - | - | |
| --------------------------TTCTCAGAGAAAAGTGGGTCT----------------------------------------------------------------------- | 21 | - | - | 1 | |
| ----------------------------------------------------------TCCTATGAGAGCTACTGGAA---------------------------------------- | 20 | - | - | 1 | |
| ---------------------------------------------------------------------------------GAAGTTTGAGCAGCCGCCAGGAAGA------------ | 25 | - | - | 1 | |
| rat | tggccaggctgtgccttggctgattattcTCAGAGAAAAGTGGGTCTCAtttcagccatcctatgagagctactggaagctgaagtttgagcagccgccaggaagaagttcttgtcaa | ||||
| ********************************************************************************************************************** | |||||
| rat | ((((.(((((...(((((((((.(((..(((((.....(((((.((((((............)))))).))))).....))).))..))).))))))..)))....))).)).)))). | 0.960 -40.10 | |||
| rat | chromosome:1:128265801:128265918:1 | intergenic |
sblock3347 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.494 | no | no | 0.32/0.44 | 18/25/0.64 | 0.0 0.0 2.3 | 0.0 0.0 3.2 | 7 14 6 | 0 0 0 | 3 6 2 | 0 0 0 | 13 29 17 | -2 -16 1 | 5arm_loop 5arm_loop_3arm 3arm | 2 2 2 | nd nd nd | 0.36 0.48 0.29 | 3 5 5 | 44 | 6 | 3 | -4 |
| reads | miRBase family seed | |||||||
| seed | ------------------------------GGUUAUC---------------------------------------------- | 23 | novel | |||||
| seed | --------------ACUAGAA-------------------------------------------------------------- | 9 | novel | |||||
| seed | ------------------------------------CUACUAU---------------------------------------- | 3 | novel | |||||
| seed | -------------------------------GUUAUCU--------------------------------------------- | 2 | novel | |||||
| seed | -----------------------------------------------AGGGUAU----------------------------- | 2 | novel | |||||
| seed | -------------------------------------------UCUCAGG--------------------------------- | 2 | novel | |||||
| seed | ----------------------------------------------CAGGGUA------------------------------ | 2 | novel | |||||
| seed | ---------------------------------UAUCUAC------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S1 | T2S2 | T3S1 | T4S1 | T5S1 | |||
| -----------------------------TGGTTATCTACTATTCTCAGGGT------------------------------- | 23 | 1 | 1 | - | 1 | - | 14 | |
| -------------TACTAGAACGCTCCTCTGGTTATCT--------------------------------------------- | 25 | - | - | - | 1 | 1 | 7 | |
| -----------------------------TGGTTATCTACTATTCTCAGGG-------------------------------- | 22 | - | - | - | - | - | 3 | |
| -----------------------------------TCTACTATTCTCAGGGTA------------------------------ | 18 | - | - | 1 | - | - | 1 | |
| ------------------------------------------TTCTCAGGGTATAAAGCTT---------------------- | 19 | - | - | - | - | - | 2 | |
| -----------------------------TGGTTATCTACTATTCTCA----------------------------------- | 19 | - | - | 1 | - | - | 1 | |
| ------------------------------GGTTATCTACTATTCTCAGGGT------------------------------- | 22 | - | - | - | - | - | 2 | |
| ----------------------------------------------CAGGGTATAAAGCTTAGTGT----------------- | 20 | - | - | 2 | - | - | - | |
| -----------------------------------TCTACTATTCTCAGGGTAT----------------------------- | 19 | - | - | - | - | - | 1 | |
| --------------------------------TTATCTACTATTCTCAGGGT------------------------------- | 20 | - | - | - | - | - | 1 | |
| ---------------------------------------------TCAGGGTATAAAGCTTAGTGT----------------- | 21 | - | - | - | - | - | 1 | |
| ---------------------------------------------TCAGGGTATAAAGCTTAGTG------------------ | 20 | - | - | - | - | - | 1 | |
| -----------------------------TGGTTATCTACTATTCTCAG---------------------------------- | 20 | - | - | - | - | 1 | - | |
| rat | ttcgtggcttgttTACTAGAACGCTCCTCTGGTTATCTACTATTCTCAGGGTataaagcttagtgtattgattgcacatgaag | |||||||
| *********************************************************************************** | ||||||||
| rat | ((((((((..((.((((((...(((.((((((..((.....))..)))))).....))))))))).)).....)).)))))). | 0.590 -15.60 | ||||||
| rat | chromosome:12:44299280:44299362:-1 | intergenic |
sblock3350 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.320 | no | no | 0.45/0.63 | 18/25/0.48 | 0.0 2.6 0.3 0.5 | 0.0 2.1 0.0 0.5 | 1 7 10 2 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 26 27 12 0 | -3 -20 15 26 | 5arm_loop 3arm 3arm 3arm | 3 3 3 3 | nd nd nd nd | 0.61 0.30 0.47 0.74 | 4 4 4 9 | 25 | 2 | 0 | -16 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------GGAUUCC----------------------- | 10 | novel | |
| seed | --------------------------------------GGUAUCU----------------------------------------------- | 4 | novel | |
| seed | -------------------------------------------------------------UGGAUUC------------------------ | 4 | novel | |
| seed | -------------------------------------UGGUAUC------------------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------------GUCUUGG---------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------GACAAGG------------- | 1 | novel | |
| seed | ---------------------------AGGAAGG---------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------CUGCCGC------------------------------------------ | 1 | novel | |
| seed | -------------------------------------------------------------------------ACAAGGA------------ | 1 | novel | |
| seed | ---------------------------------------------GCCGCCU---------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------------------------------------------------TGGATTCCTGTGACAAGGA------------ | 19 | 1 | 7 | |
| ------------------------------------------------------------TTGGATTCCTGTGACAAGGA------------ | 20 | 1 | 3 | |
| -------------------------------------------------------------TGGATTCCTGTGACAAGG------------- | 18 | - | 1 | |
| -------------------------------------TGGTATCTGCCGCCTGACCTG---------------------------------- | 21 | - | 1 | |
| -------------------------------------TGGTATCTGCCGCCTGACCTGTC-------------------------------- | 23 | - | 1 | |
| ------------------------------------------TCTGCCGCCTGACCTGTCTTGGA--------------------------- | 23 | - | 1 | |
| ------------------------------------------------------------------------GACAAGGATGCAGAACCTCT | 20 | - | 1 | |
| --------------------------------------------------------TGTCTTGGATTCCTGTGACAAGGA------------ | 24 | - | 1 | |
| -------------------------------------------------------------TGGATTCCTGTGACAAGGATGCAG------- | 24 | - | 1 | |
| -----------------------------------------------------------------------TGACAAGGATGCAGAACCTC- | 20 | - | 1 | |
| -------------------------------------TGGTATCTGCCGCCTGACCTGTCT------------------------------- | 24 | - | 1 | |
| --------------------------TAGGAAGGCCTTGGTATC------------------------------------------------ | 18 | - | 1 | |
| -------------------------------------TGGTATCTGCCGCCTGACC------------------------------------ | 19 | - | 1 | |
| ------------------------------------TTGGTATCTGCCGCCTGACCTGTCT------------------------------- | 25 | - | 1 | |
| --------------------------------------------TGCCGCCTGACCTGTCTTG----------------------------- | 19 | - | 1 | |
| rat | agcaaactctgaactggggtagacagtaggaaggccttggtatctgccgcctgacctgtcTTGGATTCCTGTGACAAGGAtgcagaacctct | |||
| ******************************************************************************************** | ||||
| rat | .(((..((....((.(((((((((((.....((((...(((....)))))))...))))))...))))).))....))..)))......... | 0.780 -25.40 | ||
| rat | chromosome:12:44299735:44299826:-1 | intergenic |
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