other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH (31 loci)
sblock8781 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.520 | no | no | 0.37/0.43 | 19/24/0.44 | 1.2 1.3 2.0 | 1.0 0.0 1.0 | 8 3 3 | 0 0 0 | 2 1 2 | 0 0 0 | 14 16 3 | -5 -21 3 | 5arm_loop_3arm 3arm_loop 3arm | 6 6 6 | nd nd nd | 0.37 0.42 0.29 | 3 5 5 | 16 | 2 | 4 | 5 |
| reads | miRBase family seed | |||
| seed | -----------------GGUGAUU---------------------------------------------- | 4 | novel | |
| seed | --------------------GAUUUGC------------------------------------------- | 3 | novel | |
| seed | ---------------CUGGUGA------------------------------------------------ | 2 | novel | |
| seed | --------------------------------GAAUCCG------------------------------- | 2 | novel | |
| seed | -----------------------------------------ACUCAUG---------------------- | 2 | novel | |
| seed | ------------------------------------CCGCUAC--------------------------- | 1 | novel | |
| seed | -------------------UGAUUUG-------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------GAUUUCA---------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----------------TGGTGATTTGCAGTTTGAA----------------------------------- | 19 | - | 4 | |
| -------------------TGATTTGCAGTTTGAATCC-------------------------------- | 19 | 2 | 1 | |
| -------------------------------TGAATCCGCTACTCATGATTTCA---------------- | 23 | - | 2 | |
| --------------TCTGGTGATTTGCAGTTTGA------------------------------------ | 20 | - | 2 | |
| ----------------------------------------TACTCATGATTTCATTTTGGGGTC------ | 24 | 2 | - | |
| ------------------GTGATTTGCAGTTTGAATC--------------------------------- | 19 | - | 1 | |
| ----------------------------------------------TGATTTCATTTTGGGGTCCTG--- | 21 | - | 1 | |
| -----------------------------------TCCGCTACTCATGATTTCA---------------- | 19 | - | 1 | |
| rat | gtctggatatctccTCTGGTGATTTGCAGTTTGAATCCGCTACTCATGATTTCATTTTGGGGTCctggac | |||
| ********************************************************************** | ||||
| rat | (((((((...((((...(((((..((.(((.((....))..))))).....)))))..))))))).)))) | 0.520 -13.80 | ||
| rat | chromosome:4:165136147:165136216:-1 | intergenic |
sblock9383 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.122 | no | no | 0.36/0.47 | 18/24/0.65 | 1.0 0.0 0.7 1.8 0.0 | 1.2 0.0 0.3 2.7 0.0 | 5 1 3 6 2 | 0 0 0 0 0 | 1 1 1 1 1 | 0 0 0 0 0 | 1 22 40 16 0 | 20 3 -17 1 25 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.30 0.32 0.45 0.29 0.43 | 5 3 5 4 5 | 17 | 2 | 4 | 1 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------GGGAUUG------------------------------------- | 4 | novel | |
| seed | -----GUAAAGU------------------------------------------------------------------------------------ | 3 | novel | |
| seed | -------------------------------------------GAGGUGU---------------------------------------------- | 2 | novel | |
| seed | ---------------------------------------------------------------------------GUCUGUU-------------- | 2 | novel | |
| seed | ---------------------------------------------------UGGGAUU-------------------------------------- | 1 | novel | |
| seed | ---UUGUAAA-------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------AGGAGGU------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------------------GAACAAA------------------------------- | 1 | novel | |
| seed | -----------------------AUACCUU------------------------------------------------------------------ | 1 | novel | |
| seed | --GUUGUAA--------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----TGTAAAGTCCAGGATAAGCA------------------------------------------------------------------------ | 20 | - | 3 | |
| ------------------------------------------GGAGGTGTTTGGGATTGAA----------------------------------- | 19 | - | 2 | |
| --------------------------------------------------------------------------TGTCTGTTAGGATGTTTGAACA | 22 | - | 2 | |
| ----------------------------------------TAGGAGGTGTTTGGGATTGA------------------------------------ | 20 | - | 1 | |
| ---------------------------------------------------TGGGATTGAACAAAGGTGA-------------------------- | 19 | - | 1 | |
| ---------------------------------------------------TGGGATTGAACAAAGGTGATGTTT--------------------- | 24 | - | 1 | |
| --GTTGTAAAGTCCAGGATAAG-------------------------------------------------------------------------- | 20 | - | 1 | |
| -TGTTGTAAAGTCCAGGATA---------------------------------------------------------------------------- | 19 | - | 1 | |
| ---------------------------------------------------TGGGATTGAACAAAGGTG--------------------------- | 18 | - | 1 | |
| --------------------------------------------------TTGGGATTGAACAAAGGTGAT------------------------- | 21 | - | 1 | |
| ---------------------------------------------------TGGGATTGAACAAAGGTGAT------------------------- | 20 | - | 1 | |
| ----------------------CATACCTTACACAGGAGCT------------------------------------------------------- | 19 | 1 | - | |
| ---------------------------------------------------------TGAACAAAGGTGATGTTTGTCTG---------------- | 23 | - | 1 | |
| rat | tTGTTGTAAAGTCCAGGATAAGCATACCTTACACAGGAGCTAGGAGGTGTTTGGGATTGAACAAAGGTGATGTTTGTCTGTTAGGATGTTTGAACA | |||
| ************************************************************************************************ | ||||
| rat | .((((.....((((.(((((((((((((((...(((...(((((.....)))))..)))....)))))).)))))))))....)))).....)))) | 0.720 -22.70 | ||
| rat | chromosome:5:114520546:114520641:-1 | intergenic |
sblock9730 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.234 | no | no | 0.35/0.64 | 19/25/0.67 | 0.0 0.0 3.3 | 0.0 0.8 0.7 | 10 4 3 | 0 0 0 | 2 1 2 | 0 0 0 | 4 14 10 | 7 -5 -24 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.35 0.36 0.21 | 3 4 4 | 18 | 3 | -5 | -4 |
| reads | miRBase family seed | ||||
| seed | -----AAACUGC---------------------------------------------------- | 11 | novel | ||
| seed | ---------------ACUGUAG------------------------------------------ | 4 | novel | ||
| seed | ------------------------------------UGGCACC--------------------- | 2 | novel | ||
| seed | -------------------------------ACCCUUG-------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S1 | T5S1 | |||
| ----TAAACTGCTATACTGTAGGT---------------------------------------- | 20 | 1 | - | 10 | |
| --------------TACTGTAGGTATGCCAGAC------------------------------- | 19 | - | - | 3 | |
| -----------------------------------TTGGCACCCAGTGTGTTCC---------- | 19 | 1 | 1 | - | |
| ------------------------------GACCCTTGGCACCCAGTGTGTTCCC--------- | 25 | - | 1 | - | |
| --------------TACTGTAGGTATGCCAGACCCT---------------------------- | 22 | - | - | 1 | |
| rat | cacaTAAACTGCTATACTGTAGGTATGCCAGACccttggcacccagtgtgttcccggacctgtg | ||||
| **************************************************************** | |||||
| rat | ((((....(((.(((((((..(((..(((((....)))))))))))))))....)))...)))) | 0.810 -16.00 | |||
| rat | chromosome:5:79245414:79245477:1 | intergenic |
sblock7177 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.182 | no | no | 0.32/0.70 | 18/26/0.43 | 0.3 0.0 0.0 1.0 0.0 3.0 0.6 | 0.3 0.0 0.0 3.3 0.0 4.2 2.6 | 6 4 1 3 1 4 9 | 0 0 0 0 0 0 0 | 2 2 1 3 1 3 2 | 0 0 0 0 0 0 0 | 7 12 24 42 55 30 13 | 30 25 13 -10 -18 0 17 | 5arm 5arm 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 2 2 | nd nd nd nd nd nd nd | 0.58 0.55 0.45 0.32 0.30 0.29 0.37 | 5 5 4 5 5 6 4 | 30 | 6 | -8 | -2 |
| reads | miRBase family seed | |||||||
| seed | -------------GGUUCCG-------------------------------------------------------------------------------------------------- | 6 | novel | |||||
| seed | ---------------------------------------------------------------------------------CCAGUAU------------------------------ | 5 | novel | |||||
| seed | --------------------------------------------------------------------------------UCCAGUA------------------------------- | 4 | novel | |||||
| seed | ---------UCCUGGU------------------------------------------------------------------------------------------------------ | 4 | novel | |||||
| seed | --------UUCCUGG------------------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ---------------------------------------------------------------AGUUGAU------------------------------------------------ | 2 | novel | |||||
| seed | -------------------------------------------GCUAGUC-------------------------------------------------------------------- | 2 | novel | |||||
| seed | ----------------------------------------------------------------------GGCCUUU----------------------------------------- | 1 | novel | |||||
| seed | -------------------------UGCCGAC-------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------------------------------AUGGCCU------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------AGUCAGA----------------------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------------------ACAGUUU------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------TGGTTCCGCCTCTTGCCGAC-------------------------------------------------------------------------------------- | 20 | - | - | 1 | - | 4 | - | |
| --------TTCCTGGTTCCGCCTCTTG------------------------------------------------------------------------------------------- | 19 | - | - | - | 1 | 2 | - | |
| -------------------------------------------------------------------------------TTCCAGTATTAGGTGGGGGGAATGTC------------- | 26 | - | - | - | - | 2 | - | |
| --------------------------------------------------------------------------------TCCAGTATTAGGTGGGGGGAATGTC------------- | 25 | - | - | - | - | 2 | - | |
| --------------------------------------------------------------------------------TCCAGTATTAGGTGGGGGGAA----------------- | 21 | - | - | - | - | 2 | - | |
| -------------------------------------------------------TACAGTTTAGTTGATGGCCT------------------------------------------- | 20 | - | - | - | - | 1 | - | |
| --------------------------------------------------------------TAGTTGATGGCCTTTTTTT------------------------------------- | 19 | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------------TTCCAGTATTAGGTGGGGG-------------------- | 19 | 1 | - | - | - | - | - | |
| -------------------------------------------------------------------------------TTCCAGTATTAGGTGGGGGGAAT---------------- | 23 | - | - | - | - | 1 | - | |
| ---------------------------------------------TAGTCAGACCTACAGTTT------------------------------------------------------- | 18 | 1 | - | - | - | - | - | |
| --------------------------------------------------------------TAGTTGATGGCCTTTTTTTCCAGT-------------------------------- | 24 | 1 | - | - | - | - | - | |
| --------------------------------------------------------------------------------TCCAGTATTAGGTGGGGGGA------------------ | 20 | - | - | - | - | 1 | - | |
| ------------------------TTGCCGACCGCTGGCTGGTG-------------------------------------------------------------------------- | 20 | - | - | - | - | 1 | - | |
| ------------------------------------------TGCTAGTCAGACCTACAG---------------------------------------------------------- | 18 | - | - | - | - | - | 1 | |
| -------TTTCCTGGTTCCGCCTCTTG------------------------------------------------------------------------------------------- | 20 | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------GATGGCCTTTTTTTCCAGT-------------------------------- | 19 | - | 1 | - | - | - | - | |
| ------------TGGTTCCGCCTCTTGCCG---------------------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------------TGGCCTTTTTTTCCAGTAT------------------------------ | 19 | - | 1 | - | - | - | - | |
| ------------------------------------------TGCTAGTCAGACCTACAGTTTAGTT--------------------------------------------------- | 25 | - | - | - | - | 1 | - | |
| -------TTTCCTGGTTCCGCCTCTT-------------------------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| --------TTCCTGGTTCCGCCTCTT-------------------------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| rat | ccagggttTTCCTGGTTCCGCCTCTTGCCGACcgctggctggtgctagtcagacctacagtttagttgatggcctttttTTCCAGTATTAGGTGGGGGGAATGTCctgcctcccctgg | |||||||
| ********************************************************************************************************************** | ||||||||
| rat | ((((((.......((.....(((((..((....(((((..((.((((.((((..(((.....)))))))))))))......)))))....))..))))).....))......)))))) | 0.930 -39.32 | ||||||
| rat | chromosome:20:5550722:5550839:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_loopOverlap (31 loci)
block106049 [novel_lenNOK_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.109 | no | no | 0.53/0.58 | 18/22/0.40 | 0.0 0.0 0.3 0.0 | 0.0 0.0 1.5 0.0 | 1 1 6 2 | 0 0 0 0 | 1 1 4 1 | 0 0 0 0 | 26 31 36 47 | 15 11 0 -7 | 5arm 5arm 5arm 5arm_loop_3arm | 1 1 1 1 | nd nd nd nd | 0.21 0.28 0.36 0.35 | 1 2 2 4 | 10 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------------UGACUGA------------------------------------------------------------------------ | 5 | novel | ||||
| seed | ------------------------------------------------CAGCUCU--------------------------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------UCGCUAG------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -------------------------------------AGUGACU-------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ---------------------------CUCCUUC------------------------------------------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T3S1 | T3S2 | T4S1 | T5S2 | |||
| --------------------------------------GTGACTGAGGCAGCTCTAA------------------------------------------------------------- | 19 | - | 2 | 1 | - | - | |
| -----------------------------------------------GCAGCTCTAAGACGAGAGTC--------------------------------------------------- | 20 | 2 | - | - | - | - | |
| --------------------------------------GTGACTGAGGCAGCTCTAAGAC---------------------------------------------------------- | 22 | - | - | - | 2 | - | |
| --------------------------GCTCCTTCGCTAGTGACTG------------------------------------------------------------------------- | 19 | - | 1 | - | - | - | |
| ------------------------------------TAGTGACTGAGGCAGCTC---------------------------------------------------------------- | 18 | - | - | - | - | 1 | |
| -------------------------------TTCGCTAGTGACTGAGGC--------------------------------------------------------------------- | 18 | - | - | 1 | - | - | |
| rat | gggttccaggctgtctttgaagttttGCTCCTTCGCTAGTGACTGAGGCAGCTCTAAGACGAGAGTCttgcggggtaccatctctagccggaagagcagaagaggaagggaaggactt | ||||||
| ********************************************************************************************************************** | |||||||
| rat | .(((((....((.(((((....((((((((.((((((((.((.((..((..((.((((((....)))))).)).))..)))).))))).))).)))))))))))))..))..))))). | 0.980 -39.40 | |||||
| rat | chromosome:10:109570044:109570161:1 | intergenic |
block204090 [novel_lenNOK_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.984 | no | no | 0.36/0.48 | 18/24/0.53 | 0.0 0.0 | 1.5 0.3 | 4 9 | 0 0 | 2 2 | 0 0 | 28 16 | -11 -1 | 5arm_loop_3arm 3arm_loop | 2 2 | nd nd | 0.38 0.10 | 4 1 | 17 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------AGAAUGU---------------------------- | 11 | novel | ||
| seed | -----------------------------AGGGCAG-------------------------------------------- | 4 | novel | ||
| seed | -----------------------------------------CAAUAGA-------------------------------- | 1 | novel | ||
| seed | ---------------------------------------CUCAAUA---------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| --------------------------------------------TAGAATGTAACTCGGAGAG----------------- | 19 | 1 | - | 6 | |
| --------------------------------------------TAGAATGTAACTCGGAGAGT---------------- | 20 | - | - | 3 | |
| ----------------------------TAGGGCAGTTTCTCAATAGA-------------------------------- | 20 | - | - | 2 | |
| ----------------------------TAGGGCAGTTTCTCAATAGAATGT---------------------------- | 24 | - | - | 1 | |
| ----------------------------------------TCAATAGAATGTAACTCGGAGA------------------ | 22 | - | - | 1 | |
| --------------------------------------------TAGAATGTAACTCGGAGAGTGGC------------- | 23 | - | - | 1 | |
| --------------------------------------TCTCAATAGAATGTAACTCGGAGA------------------ | 24 | - | - | 1 | |
| ----------------------------TAGGGCAGTTTCTCAATA---------------------------------- | 18 | - | 1 | - | |
| rat | cctttgcatggcagtcccgcacaacagtTAGGGCAGTTTCTCAATAGAATGTAACTCGGAGAGTggcgtcgactctaggt | ||||
| ******************************************************************************** | |||||
| rat | ((((((.(((.((.(((((......((((...(((..((((....)))))))))))))).)).)).))))))....))). | 0.670 -14.40 | |||
| rat | chromosome:12:44298720:44298799:-1 | intergenic |
block209410 [novel_lenNOK_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.257 | no | no | 0.40/0.58 | 19/26/0.44 | 0.0 3.0 | 2.9 0.5 | 15 2 | 0 0 | 4 2 | 0 0 | 26 8 | -14 -4 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.48 0.21 | 4 2 | 27 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ---------------------------CAAUGGA------------------------------------- | 21 | novel | |||||
| seed | ------------------------UGCCAAU---------------------------------------- | 3 | novel | |||||
| seed | --------------------------------------------CUCCCAC-------------------- | 1 | miR-532 | |||||
| seed | -------------------------GCCAAUG--------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------ACUCAUC-------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| --------------------------CCAATGGATTGAACTCATCTCCCAC-------------------- | 25 | 1 | 1 | - | - | 4 | - | |
| --------------------------CCAATGGATTGAACTCATC-------------------------- | 19 | - | - | - | - | 4 | - | |
| --------------------------CCAATGGATTGAACTCATCTC------------------------ | 21 | - | - | - | - | 4 | - | |
| --------------------------CCAATGGATTGAACTCATCTCCC---------------------- | 23 | 1 | - | - | - | 3 | - | |
| --------------------------CCAATGGATTGAACTCATCT------------------------- | 20 | - | - | - | - | 1 | - | |
| -----------------------TTGCCAATGGATTGAACTCA---------------------------- | 20 | - | - | - | - | 1 | - | |
| --------------------------CCAATGGATTGAACTCATCTCC----------------------- | 22 | - | - | - | - | 1 | - | |
| ------------------------TGCCAATGGATTGAACTCATCTCCC---------------------- | 25 | - | - | - | - | 1 | - | |
| -------------------------------------------TCTCCCACTTGCAGGAGAC--------- | 19 | - | - | 1 | - | - | - | |
| -------------------------------------AACTCATCTCCCACTTGCAGGAGACA-------- | 26 | - | - | - | 1 | - | - | |
| -----------------------TTGCCAATGGATTGAACTCATCTCCC---------------------- | 26 | - | - | - | - | - | 1 | |
| -----------------------TTGCCAATGGATTGAACTC----------------------------- | 19 | - | - | - | - | - | 1 | |
| --------------------------CCAATGGATTGAACTCATCTCCCA--------------------- | 24 | - | - | - | - | 1 | - | |
| rat | gcggagggaagtctctgggtgcattgCCAATGGATTGAACTCATCTCCCACttgcaggagacatcctagct | |||||||
| *********************************************************************** | ||||||||
| rat | ((...((((.((((((...((((.((.....(((.((....))..)))))..)))))))))).)))).)). | 0.480 -20.00 | ||||||
| rat | chromosome:12:5631863:5631933:1 | intergenic |
block590249 [novel_lenNOK_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.904 | no | no | 0.61/0.79 | 18/21/0.11 | 0.0 0.0 0.6 | 0.0 0.0 0.9 | 1 1 20 | 0 0 0 | 1 1 9 | 0 0 0 | 14 21 26 | 0 -4 -16 | 5arm 5arm_loop 3arm_loop | 1 1 1 | nd nd nd | 0.29 0.50 0.63 | 3 5 10 | 44 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | ---------------------------------GGACCGC---------------------------------------- | 21 | novel | ||||||||
| seed | ------------------------------------CCGCGAC------------------------------------- | 10 | novel | ||||||||
| seed | --------------------------------GGGACCG----------------------------------------- | 7 | novel | ||||||||
| seed | ------------------------------CGGGGAC------------------------------------------- | 2 | novel | ||||||||
| seed | ----------------------CUGUGCG--------------------------------------------------- | 1 | novel | ||||||||
| seed | ---------------------------CGGCGGG---------------------------------------------- | 1 | novel | ||||||||
| seed | -------------------------UGCGGCG------------------------------------------------ | 1 | novel | ||||||||
| seed | ---------------UUACUCA---------------------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| --------------------------------GGGACCGCGACAAACCCA------------------------------ | 18 | 1 | - | 1 | - | 7 | 6 | - | - | - | |
| -----------------------------------ACCGCGACAAACCCAGGTC-------------------------- | 19 | 2 | - | - | 1 | 1 | 4 | 1 | - | - | |
| -------------------------------GGGGACCGCGACAAACCC------------------------------- | 18 | 1 | 1 | 1 | 1 | 1 | 1 | - | - | - | |
| --------------------------------GGGACCGCGACAAACCCAG----------------------------- | 19 | 1 | - | - | 1 | - | - | - | - | 3 | |
| --------------GTTACTCACTGTGCGGCGGGG--------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------ACTGTGCGGCGGGGACCG----------------------------------------- | 18 | - | - | - | - | - | 1 | - | - | - | |
| ------------------------GTGCGGCGGGGACCGCGACAA----------------------------------- | 21 | - | - | - | - | 1 | - | - | - | - | |
| --------------------------GCGGCGGGGACCGCGACAA----------------------------------- | 19 | - | - | - | - | - | 1 | - | - | - | |
| -----------------------------GCGGGGACCGCGACAAACCC------------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------ACCGCGACAAACCCAGGT--------------------------- | 18 | - | - | - | - | 1 | - | - | - | - | |
| --------------------------------GGGACCGCGACAAACCCAGG---------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | |
| -------------------------------GGGGACCGCGACAAACCCA------------------------------ | 19 | - | - | - | - | - | 1 | - | - | - | |
| -----------------------------GCGGGGACCGCGACAAACCCA------------------------------ | 21 | - | - | 1 | - | - | - | - | - | - | |
| rat | tcggtgcgcgatgtgttactcactgtgcggcgGGGACCGCGACAAACCCAGGTCgtcgttggtggcagcagcagcagcgg | ||||||||||
| ******************************************************************************** | |||||||||||
| ..................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000032918 ENSRNOG00000023509 Irs2 | ||||||||||
| rat | .((.(((((....(((((((.((...(((((.(((...........)))..))))).)).)))))))...)).))).)). | 0.800 -26.70 | |||||||||
| rat | chromosome:16:83379482:83379561:1 | Same_strand|Boundary_non-coding|ENSRNOT00000032918|ENSRNOG00000023509 ## ENSRNOG00000023509|protein_coding|Irs2|Insulin receptor substrate 2 (Fragment). [Source:UniProtKB/TrEMBL;Acc:O70360] ## {SimpF: oe = 0.84 1 CpG} |
block712753 [novel_lenNOK_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.116 | no | no | 0.35/0.48 | 19/25/0.52 | 0.0 0.2 | 1.4 1.2 | 10 5 | 0 0 | 3 1 | 0 0 | 4 10 | 2 -5 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.36 0.21 | 5 3 | 21 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----GGCUUUU------------------------------------------------------ | 15 | novel | ||
| seed | ------------GCAUAUU----------------------------------------------- | 4 | novel | ||
| seed | ------GCUUUUG----------------------------------------------------- | 1 | novel | ||
| seed | -----------UGCAUAU------------------------------------------------ | 1 | miR-448 | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T5S1 | |||
| ----TGGCTTTTGCATATTGTGTGAAACT------------------------------------- | 25 | - | - | 6 | |
| ----TGGCTTTTGCATATTGTGTGA----------------------------------------- | 21 | 2 | 1 | 1 | |
| -----------TGCATATTGTGTGAAACTG------------------------------------ | 19 | - | - | 3 | |
| ----TGGCTTTTGCATATTGTGTGAA---------------------------------------- | 22 | - | - | 2 | |
| ----TGGCTTTTGCATATTGTGTGAAAC-------------------------------------- | 24 | 1 | - | 1 | |
| -----GGCTTTTGCATATTGTGTGA----------------------------------------- | 20 | - | - | 1 | |
| ----------TTGCATATTGTGTGAAACTG------------------------------------ | 20 | - | - | 1 | |
| ----TGGCTTTTGCATATTGTGTGAAA--------------------------------------- | 23 | - | - | 1 | |
| -----------TGCATATTGTGTGAAACTGGGACCC------------------------------ | 25 | - | - | 1 | |
| rat | gcgtTGGCTTTTGCATATTGTGTGAAACTGggacccaggttcatctttccgtgtgctttccttgca | ||||
| ****************************************************************** | |||||
| rat | (((..((.....((((((...(((((.((((...)))).)))))......))))))...)).))). | 0.990 -16.70 | |||
| rat | chromosome:18:63557948:63558013:-1 | intergenic |
block881781 [novel_lenNOK_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.035 | no | no | 0.43/0.53 | 18/24/0.53 | 2.8 0.4 | 0.6 0.0 | 5 23 | 0 0 | 1 8 | 0 0 | 30 15 | -21 -1 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.42 0.30 | 8 3 | 40 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | --------------------------------------------UACACAA--------------------------- | 19 | novel | |||||||
| seed | ---------------------------------------------ACACAAA-------------------------- | 16 | novel | |||||||
| seed | -------------------------------GUUUGCC---------------------------------------- | 2 | novel | |||||||
| seed | ------------------------------------CCACCCA----------------------------------- | 2 | novel | |||||||
| seed | -----------------------------------GCCACCC------------------------------------ | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------TTACACAAACCAGCTCCTCT--------------- | 20 | 1 | 3 | - | 1 | 1 | - | 9 | 2 | |
| --------------------------------------------TACACAAACCAGCTCCTCT--------------- | 19 | - | - | 1 | - | - | 1 | 14 | - | |
| ------------------------------TGTTTGCCACCCATTACACAAACC------------------------ | 24 | - | - | - | - | - | - | 2 | - | |
| -----------------------------------GCCACCCATTACACAAACC------------------------ | 19 | - | - | - | - | - | - | 2 | - | |
| -------------------------------------------TTACACAAACCAGCTCCTCTA-------------- | 21 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------TGCCACCCATTACACAAACCAGC--------------------- | 23 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------TTACACAAACCAGCTCCT----------------- | 18 | - | - | - | - | 1 | - | - | - | |
| rat | tatcgcatggactcaaaggcaaacctggtttgtttgccacccaTTACACAAACCAGCTCCTCTataacccaaaagatg | |||||||||
| ****************************************************************************** | ||||||||||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | |||||||||
| rat | ((((...(((......(((.....(((((((((.((........)).)))))))))..))).......)))...)))) | 0.970 -15.22 | ||||||||
| rat | chromosome:1:129030602:129030679:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
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