other hairpins
novel_lenNOK_cloningOK_multiarm_loopOverlap (31 loci)
sblock7700 [novel_lenNOK_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.141 | no | no | 0.20/0.42 | 19/23/0.68 | 0.5 0.0 0.0 0.0 0.0 0.2 | 1.5 0.0 0.0 0.0 1.3 0.5 | 2 1 1 1 3 8 | 0 0 0 0 0 0 | 2 1 1 1 1 2 | 0 0 0 0 0 0 | 10 18 25 32 21 4 | 24 19 13 6 -4 14 | 5arm 5arm 5arm 5arm 3arm_loop 3arm | 1 2 2 2 2 2 | nd nd nd nd nd nd | 0.32 0.35 0.58 0.84 0.16 0.36 | 5 5 11 16 3 3 | 19 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------------------AGUUACU------------------ | 7 | novel | ||
| seed | -----------------------------------------------------------UCAAAGU------------------------------------ | 3 | novel | ||
| seed | ------------------------------------------------------------------------------GUUACUG----------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------------------------ACUGACA-------------- | 1 | novel | ||
| seed | -----------UGUCCAA------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | -------------------GGUCUUU---------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------GUCCAAA----------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------AAGAUUU--------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------------------UAGUUAC------------------- | 1 | novel | ||
| seed | ---------------------------------AUUAAUG-------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S2 | T5S1 | |||
| ----------------------------------------------------------------------------TAGTTACTGACACAAGCCTTTT---- | 22 | - | 1 | 6 | |
| -----------------------------------------------------------------------------AGTTACTGACACAAGCCTT------ | 19 | - | - | 2 | |
| ----------------------------------------------------------TTCAAAGTGGTTGGATCTTAGTT--------------------- | 23 | - | - | 2 | |
| -------------------------TAAGATTTATTAATGGTCA---------------------------------------------------------- | 19 | - | - | 1 | |
| ----------TTGTCCAAAGGTCTTTAAGA------------------------------------------------------------------------ | 20 | - | - | 1 | |
| ----------------------------------------------------------TTCAAAGTGGTTGGATCTT------------------------- | 19 | - | - | 1 | |
| --------------------------------------------------------------------------------TACTGACACAAGCCTTTTA--- | 19 | - | - | 1 | |
| ------------------AGGTCTTTAAGATTTATTAA---------------------------------------------------------------- | 20 | 1 | - | - | |
| -----------TGTCCAAAGGTCTTTAAGATTT--------------------------------------------------------------------- | 22 | 1 | - | - | |
| --------------------------------TATTAATGGTCATGTAAAG--------------------------------------------------- | 19 | - | - | 1 | |
| ---------------------------------------------------------------------------TTAGTTACTGACACAAGCCTTTT---- | 23 | - | - | 1 | |
| rat | tgtaagctccttgtccaaaggtctttaagatttattaatggtcatgtaaagccgcttcTTCAAAGTGGTTGGATCTTAGTTACTGACACAAGCCTTTTataa | ||||
| ****************************************************************************************************** | |||||
| rat | ((((((...(((((.....(((..((((((((((................(((((((.....)))))))))))))))))..)))...)))))...)))))). | 0.490 -21.49 | |||
| rat | chromosome:3:141688033:141688134:-1 | intergenic |
sblock7966 [novel_lenNOK_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.281 | no | no | 0.42/0.56 | 18/20/0.28 | 0.0 0.4 0.0 0.0 | 0.0 0.2 0.0 0.0 | 12 5 6 1 | 0 0 0 0 | 3 1 4 1 | 0 0 0 0 | 5 9 27 11 | 13 8 -7 10 | 5arm 5arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.42 0.25 0.60 0.53 | 3 2 6 5 | 32 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------GACAUGG-------------------------------------------------------------------------- | 16 | novel | ||||
| seed | -----------------------------------------CACACAG--------------------------------------- | 8 | novel | ||||
| seed | -----------GGAGCCU--------------------------------------------------------------------- | 3 | novel | ||||
| seed | ----------UGGAGCC---------------------------------------------------------------------- | 2 | novel | ||||
| seed | ------------------------------------------ACACAGC-------------------------------------- | 2 | novel | ||||
| seed | ----------------------------------------------------------CUAUUGU---------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S1 | T4S1 | T5S1 | |||
| -----TGACATGGAGCCTGATGGA--------------------------------------------------------------- | 19 | 1 | - | - | 2 | 12 | |
| ----------------------------------------TCACACAGCCACAGTCATCT--------------------------- | 20 | - | 1 | - | 1 | 6 | |
| ----------TGGAGCCTGATGGAATATG---------------------------------------------------------- | 19 | - | - | - | - | 3 | |
| -----------------------------------------CACACAGCCACAGTCATCT--------------------------- | 19 | 1 | - | - | - | 1 | |
| ---------ATGGAGCCTGATGGAATATG---------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| ---------ATGGAGCCTGATGGAATAT----------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| -----TGACATGGAGCCTGATGG---------------------------------------------------------------- | 18 | 1 | - | - | - | - | |
| ---------------------------------------------------------TCTATTGTCCCACCACCCT----------- | 19 | - | - | 1 | - | - | |
| rat | tggagTGACATGGAGCCTGATGGAatatggccggggcgaaTCACACAGCCACAGTCATCTattgtcccaccaccctgcacacactcc | ||||||
| *************************************************************************************** | |||||||
| rat | .((((((...((.((..((.(((.(((((((...(((..........)))...))))).....)).))).))..)).))..)))))) | 0.760 -23.10 | |||||
| rat | chromosome:3:76940648:76940734:1 | intergenic |
sblock9070 [novel_lenNOK_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.030 | no | no | 0.48/0.74 | 18/25/0.36 | 0.0 0.0 0.0 0.2 0.0 0.0 | 1.5 0.0 1.0 0.0 3.3 0.0 | 2 1 2 4 3 2 | 0 0 0 0 0 0 | 1 1 1 2 1 1 | 0 0 0 0 0 0 | 4 15 30 40 33 1 | 35 24 9 0 -2 36 | 5arm 5arm 5arm 5arm 3arm_loop 3arm | 1 1 1 1 2 2 | nd nd nd nd nd nd | 0.28 0.43 0.68 0.42 0.48 0.16 | 2 3 9 4 6 1 | 14 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------CUCAGCC----------------------------------------------------------------------- | 3 | novel | |
| seed | ---------------------------------------------------------------AGGUCUC-------------------------------------------------- | 3 | novel | |
| seed | -----GGAGGAG------------------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | -------------------------------UUCAGCC---------------------------------------------------------------------------------- | 2 | novel | |
| seed | -----------------------------------------------------------------------------------------------------GCAGCCU------------ | 2 | novel | |
| seed | -----------------------------------------UCUCAGC------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------GGUCACU------------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------------------------TCTCAGCCGATCCCCCGCC------------------------------------------------------------ | 19 | 3 | - | |
| ----------------------------------------------------------------------------------------------------TGCAGCCTTCTCTCCAAGG- | 19 | - | 2 | |
| --------------------------------------------------------------TAGGTCTCCTAGGGGGTT---------------------------------------- | 18 | - | 1 | |
| ------------------------------TTTCAGCCCCTTCTCAGCCGA--------------------------------------------------------------------- | 21 | - | 1 | |
| ----TGGAGGAGGGGTGGTCACTTT----------------------------------------------------------------------------------------------- | 21 | - | 1 | |
| --------------------------------------------------------------TAGGTCTCCTAGGGGGTTAGGTGCA--------------------------------- | 25 | - | 1 | |
| --------------------------------------------------------------TAGGTCTCCTAGGGGGTTAGG------------------------------------- | 21 | - | 1 | |
| ----TGGAGGAGGGGTGGTCAC-------------------------------------------------------------------------------------------------- | 18 | - | 1 | |
| ----------------------------------------TTCTCAGCCGATCCCCCGCC------------------------------------------------------------ | 20 | - | 1 | |
| ------------------------------TTTCAGCCCCTTCTCAGCC----------------------------------------------------------------------- | 19 | - | 1 | |
| ---------------TGGTCACTTTGGGTGTTTCAG------------------------------------------------------------------------------------ | 21 | - | 1 | |
| rat | tcctTGGAGGAGGGGTGGTCACTTTGGGTGTTTCAGCCCCTTCTCAGCCGATCCCCCGCCgcTAGGTCTCCTAGGGGGTTAGGTGCAttcaaccccattcTGCAGCCTTCTCTCCAAGGc | |||
| ************************************************************************************************************************ | ||||
| rat | .(((((((((((((.((..((...((((.(((...((.........(((...((((((((....)))......)))))...)))))....)))))))...)))).))))).)))))))). | 0.550 -46.60 | ||
| rat | chromosome:4:164249872:164249991:1 | intergenic |
sblock9078 [novel_lenNOK_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.124 | no | no | 0.45/0.53 | 19/23/0.50 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 2.0 0.0 0.7 | 1 1 2 3 3 | 0 0 0 0 0 | 1 1 1 3 1 | 0 0 0 0 0 | 38 54 29 16 1 | -2 -21 5 22 34 | 5arm_loop 5arm_loop_3arm 3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.26 0.45 0.32 0.58 0.50 | 3 6 2 7 6 | 10 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------------------------------------CCUAAGC--------------------------- | 3 | novel | |||
| seed | ------------------------------------------------------------------------------------------------UCUCCAA--------------- | 3 | novel | |||
| seed | -------------------------------------------------------------------GAGGUCA-------------------------------------------- | 2 | novel | |||
| seed | -------------------------------------------------------AGCAAGG-------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------GGAUUCU------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T4S2 | T5S1 | |||
| -----------------------------------------------------------------------------------ACCTAAGCCTTCTTCTCCA---------------- | 19 | 1 | 1 | - | 1 | |
| -----------------------------------------------------------------------------------------------TTCTCCAAGCCTCAAAGTAGTG- | 22 | - | - | - | 2 | |
| ------------------------------------------------------------------TGAGGTCAGAAGCCAGAAC--------------------------------- | 19 | - | - | - | 1 | |
| ------------------------------------------------------------------TGAGGTCAGAAGCCAGAACCTAA----------------------------- | 23 | - | - | - | 1 | |
| ------------------------------------------------------TAGCAAGGTCTCTGAGGTCAGA------------------------------------------ | 22 | - | - | - | 1 | |
| -----------------------------------------------------------------------------------------------TTCTCCAAGCCTCAAAGTAG--- | 20 | - | - | - | 1 | |
| --------------------------------------TGGATTCTCCCAGCGATAG------------------------------------------------------------- | 19 | - | - | 1 | - | |
| rat | ccattttaaagtgacgctcgcacatgaagcagagtctcTGGATTCTCCCAGCGATAGCAAGGTCTCTGAGGTCAGAAGCCAGAACCTAAGCCTTCTTCTCCAAGCCTCAAAGTAGTGg | |||||
| ********************************************************************************************************************** | ||||||
| rat | (((((......(((.(((.......(((((..((..(((((.(((((((((.(((......))).))).))..)))).)))))..))..)).))).......))).)))....))))) | 0.970 -32.64 | ||||
| rat | chromosome:4:164252291:164252408:1 | intergenic |
sblock9763 [novel_lenNOK_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.372 | no | no | 0.44/0.56 | 18/20/0.10 | 0.2 0.0 0.0 0.0 | 0.2 1.0 0.0 0.0 | 4 2 3 1 | 0 0 0 0 | 2 2 2 1 | 0 0 0 0 | 9 17 24 21 | 2 -7 -12 -6 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm_loop | 1 1 1 1 | nd nd nd nd | 0.22 0.35 0.39 0.56 | 3 6 6 5 | 10 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------------------------UGUUGGC------------------------------------- | 3 | novel | |||
| seed | ----------CUCAUUG---------------------------------------------------- | 3 | novel | |||
| seed | ------------------GGCUAGA-------------------------------------------- | 2 | novel | |||
| seed | -----------UCAUUGC--------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------CAGUGUA------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S1 | T3S1 | T3S2 | |||
| ---------GCTCATTGCGGCTAGATG------------------------------------------ | 18 | - | - | - | 3 | |
| ------------------------ATGTTGGCAGTGTAACTC--------------------------- | 18 | 2 | - | - | 1 | |
| -----------------CGGCTAGATGTTGGCAGT---------------------------------- | 18 | 1 | - | - | - | |
| ----------CTCATTGCGGCTAGATGT----------------------------------------- | 18 | - | - | 1 | - | |
| -----------------CGGCTAGATGTTGGCAGTGT-------------------------------- | 20 | - | - | - | 1 | |
| ------------------------------GCAGTGTAACTCTATCCC--------------------- | 18 | - | 1 | - | - | |
| rat | gccttggtgGCTCATTGCGGCTAGATGTTGGCAGTGTAACTCTATCCCagccgtgttaggcgcactggt | |||||
| ********************************************************************* | ||||||
| rat | (((..(((((((...((((((((((.((((......))))))).....)))))))...))).))))))) | 0.800 -20.90 | ||||
| rat | chromosome:5:107252696:107252764:1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap (31 loci)
sblock10552 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.179 | no | no | 0.48/0.65 | 19/25/0.50 | 0.0 0.0 4.0 1.5 | 0.0 0.0 1.0 1.5 | 1 1 2 2 | 0 0 0 0 | 1 1 2 2 | 0 0 0 0 | 25 49 32 13 | 9 -14 3 26 | 5arm 5arm_loop_3arm 3arm 3arm | 9 16 16 16 | nd nd nd nd | 0.50 0.58 0.53 0.15 | 7 6 8 2 | 6 | 5 | 0 | 0 |
| reads | miRBase family seed | ||||||
| seed | --------------------------CUGAAGC--------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------------------CAUCUUG------------------------------------------- | 1 | novel | ||||
| seed | -------------------------------------------------------------------------------------CGAAGCC---------------------------- | 1 | novel | ||||
| seed | --------------------------------------------------------------AAGUAAA--------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------------------------------------AGCCUGC------------------------- | 1 | novel | ||||
| seed | --------------------------------------------------AGGCAGA--------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T2S1 | T3S1 | T3S2 | T4S1 | T5S2 | |||
| ---------------------------------------------------------------------------------------AAGCCTGCGGGAGCAGAAGT------------- | 20 | - | - | - | 1 | - | |
| -------------------------------------------------GAGGCAGAGGTCCAAGTAA---------------------------------------------------- | 19 | 1 | - | - | - | - | |
| -------------------------------------------------------------CAAGTAAACCATCTTGTGCACCCAC---------------------------------- | 25 | - | - | - | - | 1 | |
| -------------------------GCTGAAGCGCAAGAGAAGAA--------------------------------------------------------------------------- | 20 | - | - | 1 | - | - | |
| ------------------------------------------------------------------------------------ACGAAGCCTGCGGGAGCAGA---------------- | 20 | - | - | 1 | - | - | |
| ---------------------------------------------------------------------CCATCTTGTGCACCCACGA-------------------------------- | 19 | - | 1 | - | - | - | |
| rat | tcggtttgtgtgcctgcctttccagGCTGAAGCGCAAGAGAAGAAagatGAGGCAGAGGTCCAAGTAAACCATCTTGTGCACCCACGAAGCCTGCGGGAGCAGAAGTaagggatgctgaa | ||||||
| ************************************************************************************************************************ | |||||||
| rat | (((((.....((((((.(((((((((((...((((((((.........((.(((....))))).........))))))))........)))))).))))))))..)))......))))). | 0.510 -36.47 | |||||
| rat | chromosome:7:1840166:1840285:-1 | intergenic |
sblock11232 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.040 | no | no | 0.42/0.58 | 19/19/0.00 | 2.3 0.0 0.0 | 2.3 0.0 0.0 | 6 1 2 | 0 0 0 | 1 1 2 | 0 0 0 | 26 18 4 | -5 -4 10 | 5arm_loop 3arm_loop 3arm | 6 11 11 | nd nd nd | 0.26 0.16 0.11 | 2 3 1 | 9 | 2 | 0 | 3 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------GCUGCCU--------------- | 2 | novel | |
| seed | -----------------------------AGUGUGA--------------------------------------------------- | 2 | novel | |
| seed | --------------------------------GUGAGGU------------------------------------------------ | 2 | novel | |
| seed | ---------------------------CUAGUGU----------------------------------------------------- | 2 | novel | |
| seed | ---------------------------------------------------UCCCUUG----------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -------------------------------TGTGAGGTCTACAGCATAA------------------------------------- | 19 | 2 | - | |
| ----------------------------TAGTGTGAGGTCTACAGCA---------------------------------------- | 19 | 2 | - | |
| ----------------------------------------------------------------TGCTGCCTTTTCAGGAAGA---- | 19 | 1 | 1 | |
| --------------------------TCTAGTGTGAGGTCTACAG------------------------------------------ | 19 | 2 | - | |
| --------------------------------------------------TTCCCTTGGACCCATGCTG------------------ | 19 | 1 | - | |
| rat | tgccttttttgccatgaaatggctcaTCTAGTGTGAGGTCTACAGCATAATTCCCTTGGACCCATGCTGCCTTTTCAGGAAGAtgca | |||
| *************************************************************************************** | ||||
| rat | .((...((((.((.(((((.(((......((((((.((((((.((.........))))))))))))))))).))))))))))).)). | 0.950 -24.20 | ||
| rat | chromosome:7:18840994:18841080:1 | intergenic |
sblock1428 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.559 | no | no | 0.33/0.47 | 18/21/0.54 | 0.0 1.5 0.0 0.0 0.0 0.0 | 0.0 0.5 0.0 1.0 0.0 0.2 | 2 2 1 3 1 4 | 0 0 0 0 0 0 | 1 1 1 1 1 1 | 0 0 0 0 0 0 | 20 43 56 35 22 11 | 21 -5 -15 -4 11 20 | 5arm 5arm_loop 5arm_loop_3arm 3arm_loop 3arm 3arm | 26 26 32 32 32 32 | nd nd nd nd nd nd | 0.26 0.52 0.47 0.38 0.05 0.14 | 2 5 6 4 1 1 | 13 | 1 | 2 | 7 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------------GGGGUGG------------------------ | 4 | novel |
| seed | ---------------------------------------------------------------CAAUUGG------------------------------------------------ | 3 | novel |
| seed | ---------------------UUCAACC------------------------------------------------------------------------------------------ | 2 | novel |
| seed | --------------------------------------------AUUAGAA------------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------------------------AGAAUUG---------------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------------------------------------GAUGAUG--------------------------------- | 1 | novel |
| seed | ---------------------------------------------------------CAGACUC------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------------------------------------------------TGGGGTGGATGAAAAACTTC------------ | 20 | 3 | |
| --------------------------------------------------------------TCAATTGGAGAAGCAAGATGA----------------------------------- | 21 | 2 | |
| --------------------TTTCAACCAGTTTCACGAT------------------------------------------------------------------------------- | 19 | 2 | |
| -----------------------------------------------------------------------------AGATGATGTTGGGGTGGAT---------------------- | 19 | 1 | |
| ----------------------------------------------TAGAATTGTCTCAGACTCA----------------------------------------------------- | 19 | 1 | |
| -------------------------------------------TATTAGAATTGTCTCAGACTC------------------------------------------------------ | 21 | 1 | |
| --------------------------------------------------------------------------------------TGGGGTGGATGAAAAACTTCA----------- | 21 | 1 | |
| --------------------------------------------------------------TCAATTGGAGAAGCAAGA-------------------------------------- | 18 | 1 | |
| --------------------------------------------------------TCAGACTCAATTGGAGAAG------------------------------------------- | 19 | 1 | |
| rat | gtatttgtaaagatgtaaatTTTCAACCAGTTTCACGATaagtTATTAGAATTGTCTCAGACTCAATTGGAGAAGCAAGATGATGTTGGGGTGGATGAAAAACTTCAttatatttgcc | ||
| ********************************************************************************************************************** | |||
| rat | (((..(((((.((.((...((((((.(((..(((.((((..((((((....((.((.(((......))))).))....)))))))))))))))).)))))))).)).)))))..))). | 0.500 -19.80 |
| rat | chromosome:1:51121579:51121696:1 | intergenic |
sblock1445 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.282 | no | no | 0.23/0.42 | 19/22/0.50 | 0.0 0.0 0.0 0.0 1.5 0.0 | 0.0 0.0 0.0 0.0 0.5 0.0 | 1 1 1 2 2 1 | 0 0 0 0 0 0 | 1 1 1 1 1 1 | 0 0 0 0 0 0 | 18 29 41 37 11 1 | 7 -5 -12 -7 16 29 | 5arm 5arm_loop 3arm_loop 3arm_loop 3arm 3arm | 11 22 32 32 32 32 | nd nd nd nd nd nd | 0.29 0.45 0.60 0.47 0.33 0.42 | 3 6 11 6 3 3 | 8 | 2 | 0 | -24 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------UUCAACC------------------------------------------------ | 2 | novel | |
| seed | -------------------AGACUUU--------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------AAAAUUU----------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------AGAAUUG---------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------------------------CAGACUC------------ | 1 | novel | |
| seed | ---------------------------------------------------------------------------AUUAGAA------------------------- | 1 | novel | |
| seed | ------------------------------UGUAUUU---------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------------TTTCAACCAGTTTCACGAT------------------------------------- | 19 | - | 2 | |
| -----------------------------ATGTATTTGTAAAGCTGTAAAA-------------------------------------------------------- | 22 | - | 1 | |
| ---------------------------------------------------------------------------------------TCAGACTCAATTGGAGAAG- | 19 | - | 1 | |
| ----------------------------------------------TAAAATTTCAACCAGTTTCA----------------------------------------- | 20 | 1 | - | |
| -----------------------------------------------------------------------------TAGAATTGTCTCAGACTCA----------- | 19 | - | 1 | |
| ------------------AAGACTTTCAGATGTATTTGT-------------------------------------------------------------------- | 21 | - | 1 | |
| --------------------------------------------------------------------------TATTAGAATTGTCTCAGACTC------------ | 21 | - | 1 | |
| rat | cttcctcctctcggtggtAAGACTTTCAGATGTATTTGTAAAGCTGTAAAATTTCAACCAGTTTCACGATaagtTATTAGAATTGTCTCAGACTCAATTGGAGAAGa | |||
| *********************************************************************************************************** | ||||
| rat | (((.((((......((((.((((.(((.((((...((((.((((((............)))))).)))).....)))).)))..))))...)).))...))))))). | 1.000 -21.20 | ||
| rat | chromosome:1:51422700:51422806:1 | intergenic |
sblock1485 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.140 | no | no | 0.32/0.53 | 19/22/0.38 | 0.0 0.0 0.0 0.0 2.0 | 0.0 0.0 0.0 0.0 0.5 | 1 1 3 1 2 | 0 0 0 0 0 | 1 1 1 1 1 | 0 0 0 0 0 | 18 32 41 26 11 | 19 2 -4 4 18 | 5arm 5arm 5arm_loop 3arm 3arm | 22 22 22 24 24 | nd nd nd nd nd | 0.37 0.45 0.58 0.50 0.23 | 6 10 6 10 3 | 8 | 2 | 0 | 7 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------AUCUGCA---------------------------------------------------------------- | 3 | novel | |
| seed | --------------------------------------------------------------------------------GUAGCCA-------------------------- | 1 | novel | |
| seed | ---------------------------------GCUGCUA------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------GACAGUA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------UUGUCUU---------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------------CCAUACU---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -----------------------------------------TATCTGCATAAGTATTTCC----------------------------------------------------- | 19 | 3 | - | |
| ------------------TGACAGTAGATCCAGGCTG---------------------------------------------------------------------------- | 19 | 1 | - | |
| -----------------------------------------------------------------CTTGTCTTTCACTATGTAGCCA-------------------------- | 22 | - | 1 | |
| --------------------------------GGCTGCTAATATCTGCATAAGT----------------------------------------------------------- | 22 | 1 | - | |
| -----------------------------------------------------------------------------------GCCATACTTTCAGATACAT----------- | 19 | 1 | - | |
| -------------------------------------------------------------------------------TGTAGCCATACTTTCAGATACA------------ | 22 | 1 | - | |
| rat | gtatttattctgtgccccTGACAGTAGATCCAGGCTGCTAATATCTGCATAAGTATTTCCcatgcCTTGTCTTTCACTATGTAGCCATACTTTCAGATACATttatgaagaca | |||
| ***************************************************************************************************************** | ||||
| --------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | ((.(((((...(((...((((.((((......((((((..........((((((((.....)))).))))..........)))))).)))).))))...)))..))))).)). | 0.920 -21.65 | ||
| rat | chromosome:1:51544544:51544656:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
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