other hairpins
novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap (31 loci)
sblock8662 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.883 | no | no | 0.50/0.60 | 18/25/0.25 | 0.0 2.0 0.0 | 0.0 0.5 0.0 | 1 2 1 | 0 0 0 | 1 2 1 | 0 0 0 | 7 23 22 | 5 -9 9 | 5arm 5arm_loop_3arm 3arm | 30 31 31 | nd nd nd | 0.16 0.23 0.50 | 2 3 4 | 4 | 4 | 2 | -11 |
| reads | miRBase family seed | |||||
| seed | ------------------------CUCUGCA---------------------------------------------------------- | 1 | novel | |||
| seed | --------AACCCCG-------------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------GCAGUGU------------------------------------------------------ | 1 | novel | |||
| seed | --------------------------------------------------GAAGACU-------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T2S2 | T5S1 | |||
| -------CAACCCCGAACGATGGACTCTGCAG--------------------------------------------------------- | 25 | - | 1 | - | - | |
| -------------------------------------------------GGAAGACTTTGTACCCTC---------------------- | 18 | - | - | 1 | - | |
| ---------------------------TGCAGTGTCCCGTGGACAT------------------------------------------- | 19 | 1 | - | - | - | |
| -----------------------ACTCTGCAGTGTCCCGTGGACA-------------------------------------------- | 22 | - | - | - | 1 | |
| rat | tcggtgtCAACCCCGAACGATGGACTCTGCAGTGTCCCGTGGACATtctGGAAGACTTTGTACCCTCtccttggcgaaggttcactggt | |||||
| ***************************************************************************************** | ||||||
| rat | ((((((..((((((((..((.(((((((.((((((((...)))))..)))..)))....)).)).))...))))....)))))))))). | 0.600 -21.30 | ||||
| rat | chromosome:4:150733814:150733902:-1 | intergenic |
sblock8689 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.923 | no | no | 0.50/0.60 | 18/25/0.25 | 0.0 2.0 0.0 | 0.0 0.5 0.0 | 1 2 1 | 0 0 0 | 1 2 1 | 0 0 0 | 6 22 20 | 5 -9 9 | 5arm 5arm_loop_3arm 3arm | 30 31 31 | nd nd nd | 0.16 0.23 0.50 | 2 3 4 | 4 | 4 | 2 | -11 |
| reads | miRBase family seed | |||||
| seed | -------AACCCCG------------------------------------------------------------------------ | 1 | novel | |||
| seed | -------------------------------------------------GAAGACU------------------------------ | 1 | novel | |||
| seed | ---------------------------GCAGUGU---------------------------------------------------- | 1 | novel | |||
| seed | -----------------------CUCUGCA-------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T2S2 | T5S1 | |||
| ----------------------ACTCTGCAGTGTCCCGTGGACA------------------------------------------ | 22 | - | - | - | 1 | |
| --------------------------TGCAGTGTCCCGTGGACAT----------------------------------------- | 19 | 1 | - | - | - | |
| ------CAACCCCGAACGATGGACTCTGCAG------------------------------------------------------- | 25 | - | 1 | - | - | |
| ------------------------------------------------GGAAGACTTTGTACCCTC-------------------- | 18 | - | - | 1 | - | |
| rat | cggtgtCAACCCCGAACGATGGACTCTGCAGTGTCCCGTGGACATtctGGAAGACTTTGTACCCTCtccttggcgaaggttcactg | |||||
| ************************************************************************************** | ||||||
| rat | (((((..((((((((..((.(((((((.((((((((...)))))..)))..)))....)).)).))...))))....))))))))) | 0.540 -19.70 | ||||
| rat | chromosome:4:150763080:150763165:-1 | intergenic |
sblock9365 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.046 | no | no | 0.42/0.57 | 19/23/0.50 | 2.3 0.0 | 3.7 0.0 | 3 1 | 0 0 | 3 1 | 0 0 | 2 20 | 22 -1 | 5arm 3arm | 136 136 | nd nd | 0.37 0.13 | 3 2 | 4 | 4 | -20 | -16 |
| reads | miRBase family seed | |||||
| seed | ---CAUCCAU------------------------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | -----------------------------------------------------------------------AGACUGU----------------------------------- | 1 | novel | |||
| seed | ----------GACAACU------------------------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T3S1 | T3S2 | T4S1 | |||
| ----------------------------------------------------------------------AAGACTGTGGATGGCCCCTCTGA-------------------- | 23 | - | - | - | 1 | |
| --TCATCCATGACAACTTTGG-------------------------------------------------------------------------------------------- | 19 | - | - | 1 | - | |
| --TCATCCATGACAACTTTGGCATC---------------------------------------------------------------------------------------- | 23 | 1 | - | - | - | |
| ---------TGACAACTTTGGCATCGTG------------------------------------------------------------------------------------- | 19 | - | 1 | - | - | |
| rat | ggTCATCCATGACAACTTTGGCATCGTGgaagggctcatgatcacagtctataccatcattgccactcagAAGACTGTGGATGGCCCCTCTGAaaagctgtagcgtgatggcc | |||||
| ***************************************************************************************************************** | ||||||
| rat | ((((((.((((...((...(((....((((.((((.(((..(((((((((.....................)))))))))))))))).))))....)))))..)))))))))) | 0.990 -36.10 | ||||
| rat | chromosome:5:100213090:100213202:-1 | intergenic |
sblock11165 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.754 | no | no | 0.42/0.61 | 19/23/0.44 | 0.0 1.5 0.0 | 0.0 2.8 0.5 | 1 6 2 | 0 0 0 | 1 2 1 | 0 0 0 | 19 27 0 | 10 -4 28 | 5arm 5arm 3arm | 16 16 16 | nd nd nd | 0.26 0.32 0.37 | 2 2 4 | 9 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | -------------------------------GCACACU------------------------------------------------------------------ | 3 | novel | |
| seed | ----------------------------------CACUCAG--------------------------------------------------------------- | 2 | novel | |
| seed | -------------------------------------------------------------------------------------CUAAUGA------------ | 2 | novel | |
| seed | ----------------------------GGAGCAC--------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------CCCCUGC----------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ------------------------------AGCACACTCAGTATCTACA------------------------------------------------------- | 19 | - | 3 | |
| ---------------------------------ACACTCAGTATCTACATGGACCC------------------------------------------------ | 23 | - | 2 | |
| -------------------TCCCCTGCTGGAGCACACTCAGT-------------------------------------------------------------- | 23 | - | 1 | |
| ------------------------------------------------------------------------------------GCTAATGACTGTAGCATGGT | 20 | - | 1 | |
| ------------------------------------------------------------------------------------GCTAATGACTGTAGCATGG- | 19 | - | 1 | |
| ---------------------------TGGAGCACACTCAGTATCT---------------------------------------------------------- | 19 | 1 | - | |
| rat | ccattattagttcaagaagTCCCCTGCTGGAGCACACTCAGTATCTACATGGACCCcctttgatgttagtaggccctagaagagGCTAATGACTGTAGCATGGT | |||
| ******************************************************************************************************** | ||||
| rat | ((((...(((.(((...((.((.((.((((.((..(((.((((((.....((....))...)))))))))..)).)))).)).))))..))))))....)))). | 0.890 -21.90 | ||
| rat | chromosome:7:17179590:17179693:1 | intergenic |
sblock11187 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.754 | no | no | 0.42/0.61 | 19/23/0.44 | 0.0 1.5 0.0 | 0.0 2.8 0.5 | 1 6 2 | 0 0 0 | 1 2 1 | 0 0 0 | 19 27 0 | 10 -4 28 | 5arm 5arm 3arm | 16 16 16 | nd nd nd | 0.26 0.32 0.37 | 2 2 4 | 9 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | -------------------------------GCACACU------------------------------------------------------------------ | 3 | novel | |
| seed | ----------------------------------CACUCAG--------------------------------------------------------------- | 2 | novel | |
| seed | -------------------------------------------------------------------------------------CUAAUGA------------ | 2 | novel | |
| seed | ----------------------------GGAGCAC--------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------CCCCUGC----------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ------------------------------AGCACACTCAGTATCTACA------------------------------------------------------- | 19 | - | 3 | |
| ---------------------------------ACACTCAGTATCTACATGGACCC------------------------------------------------ | 23 | - | 2 | |
| -------------------TCCCCTGCTGGAGCACACTCAGT-------------------------------------------------------------- | 23 | - | 1 | |
| ------------------------------------------------------------------------------------GCTAATGACTGTAGCATGGT | 20 | - | 1 | |
| ------------------------------------------------------------------------------------GCTAATGACTGTAGCATGG- | 19 | - | 1 | |
| ---------------------------TGGAGCACACTCAGTATCT---------------------------------------------------------- | 19 | 1 | - | |
| rat | ccattattagttcaagaagTCCCCTGCTGGAGCACACTCAGTATCTACATGGACCCcctttgatgttagtaggccctagaagagGCTAATGACTGTAGCATGGT | |||
| ******************************************************************************************************** | ||||
| rat | ((((...(((.(((...((.((.((.((((.((..(((.((((((.....((....))...)))))))))..)).)))).)).))))..))))))....)))). | 0.890 -21.90 | ||
| rat | chromosome:7:17426713:17426816:1 | intergenic |
sblock11233 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.754 | no | no | 0.42/0.61 | 19/23/0.44 | 0.0 1.5 0.0 | 0.0 2.8 0.5 | 1 6 2 | 0 0 0 | 1 2 1 | 0 0 0 | 19 27 0 | 10 -4 28 | 5arm 5arm 3arm | 16 16 16 | nd nd nd | 0.26 0.32 0.37 | 2 2 4 | 9 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | -------------------------------GCACACU------------------------------------------------------------------ | 3 | novel | |
| seed | ----------------------------------CACUCAG--------------------------------------------------------------- | 2 | novel | |
| seed | -------------------------------------------------------------------------------------CUAAUGA------------ | 2 | novel | |
| seed | ----------------------------GGAGCAC--------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------CCCCUGC----------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ------------------------------AGCACACTCAGTATCTACA------------------------------------------------------- | 19 | - | 3 | |
| ---------------------------------ACACTCAGTATCTACATGGACCC------------------------------------------------ | 23 | - | 2 | |
| -------------------TCCCCTGCTGGAGCACACTCAGT-------------------------------------------------------------- | 23 | - | 1 | |
| ------------------------------------------------------------------------------------GCTAATGACTGTAGCATGGT | 20 | - | 1 | |
| ------------------------------------------------------------------------------------GCTAATGACTGTAGCATGG- | 19 | - | 1 | |
| ---------------------------TGGAGCACACTCAGTATCT---------------------------------------------------------- | 19 | 1 | - | |
| rat | ccattattagttcaagaagTCCCCTGCTGGAGCACACTCAGTATCTACATGGACCCcctttgatgttagtaggccctagaagagGCTAATGACTGTAGCATGGT | |||
| ******************************************************************************************************** | ||||
| rat | ((((...(((.(((...((.((.((.((((.((..(((.((((((.....((....))...)))))))))..)).)))).)).))))..))))))....)))). | 0.890 -21.90 | ||
| rat | chromosome:7:18841253:18841356:1 | intergenic |
novel_lenNOK_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH (30 loci)
block22270 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.797 | no | no | 0.48/0.63 | 18/24/0.68 | 3.0 | 2.5 | 22 | 0 | 7 | 0 | 25 | -20 | 3arm | 9 | nd | 0.35 | 3 | 22 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ----------------------------------------------------AGCCCAG------------------------------------------------- | 6 | novel | ||||||
| seed | -----------------------------------------------------GCCCAGU------------------------------------------------ | 4 | novel | ||||||
| seed | --------------------------------------------------GGAGCCC--------------------------------------------------- | 4 | novel | ||||||
| seed | ----------------------------------------------------------GUGACAC------------------------------------------- | 3 | novel | ||||||
| seed | -------------------------------------------------------CCAGUGA---------------------------------------------- | 2 | novel | ||||||
| seed | ------------------------------------------------------------GACACCA----------------------------------------- | 1 | novel | ||||||
| seed | --------------------------------------------------------------CACCAUC--------------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------------------------------CAUCGAG------------------------------------ | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------GAGCCCAGTGACACCATCGAGAAC--------------------------------- | 24 | - | 2 | - | - | 3 | - | - | |
| -------------------------------------------------TGGAGCCCAGTGACACCATC--------------------------------------- | 20 | - | 1 | 2 | 1 | - | - | - | |
| ----------------------------------------------------AGCCCAGTGACACCATCGAGAAC--------------------------------- | 23 | 1 | - | 1 | - | 1 | - | - | |
| ---------------------------------------------------------AGTGACACCATCGAGAAC--------------------------------- | 18 | - | - | - | 1 | - | - | 1 | |
| -----------------------------------------------------------TGACACCATCGAGAACGTGAA---------------------------- | 21 | - | - | - | 1 | - | - | - | |
| ---------------------------------------------------------AGTGACACCATCGAGAACG-------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------ACACCATCGAGAACGTGAAG--------------------------- | 20 | - | 1 | - | - | - | - | - | |
| ----------------------------------------------------AGCCCAGTGACACCATCG-------------------------------------- | 18 | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------CCCAGTGACACCATCGAGA----------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------------------CCATCGAGAACGTGAAGGC------------------------- | 19 | - | 1 | - | - | - | - | - | |
| ---------------------------------------------------GAGCCCAGTGACACCATCG-------------------------------------- | 19 | - | 1 | - | - | - | - | - | |
| ------------------------------------------------------CCCAGTGACACCATCGAGAAC--------------------------------- | 21 | - | - | - | 1 | - | - | - | |
| rat | atgcaattctctgtgaagaccctgaccggcaagaccatcaccctggaggTGGAGCCCAGTGACACCATCGAGAACGTGAAGGCcaagatccaggataaagagggcatc | ||||||||
| ************************************************************************************************************ | |||||||||
| rat | ((((....((((........((((...(((.......((((.((.((((((..((...))..)))).)).))...))))..)))......))))....)))).)))). | 0.530 -25.20 | |||||||
| rat | chromosome:10:49428080:49428187:-1 | intergenic |
block69176 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.164 | no | no | 0.60/0.72 | 18/21/0.14 | 1.4 | 1.1 | 14 | 0 | 7 | 0 | 25 | -18 | 5arm_loop_3arm | 1 | nd | 0.33 | 2 | 14 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------CGGCUGG------------------------------------ | 8 | novel | ||||||
| seed | -----------------------------UCGCAGC------------------------------------------ | 2 | novel | ||||||
| seed | ------------------------------------GGCUGGA----------------------------------- | 2 | novel | ||||||
| seed | -------------------------------GCAGCGG---------------------------------------- | 1 | novel | ||||||
| seed | ----------------------------------GCGGCUG------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S2 | T5S1 | |||
| ----------------------------------GCGGCTGGAGAGAAACGAC------------------------- | 19 | 3 | 1 | 3 | 1 | - | - | - | |
| ----------------------------GTCGCAGCGGCTGGAGAG-------------------------------- | 18 | - | - | - | - | 2 | - | - | |
| -----------------------------------CGGCTGGAGAGAAACGAC------------------------- | 18 | - | - | - | - | 2 | - | - | |
| ---------------------------------AGCGGCTGGAGAGAAACGAC------------------------- | 20 | - | - | - | - | - | 1 | - | |
| ------------------------------CGCAGCGGCTGGAGAGAAACG--------------------------- | 21 | - | - | - | - | - | - | 1 | |
| rat | cggcgcggacgccattttgtcggtgtttGTCGCAGCGGCTGGAGAGAAACGACggcggtttggcgacatttctcggcc | ||||||||
| ****************************************************************************** | |||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000005048 ENSRNOG00000003714 Clk4 | ||||||||
| rat | .(((.(((((((((..((((((.(((((.((.(((...)))..)).))))).))))))..))))).....)).))))) | 0.740 -30.00 | |||||||
| rat | chromosome:10:36784056:36784133:1 | Same_strand|Boundary_non-coding|ENSRNOT00000047377|ENSRNOG00000003714 ## Same_strand|Intronic_non-coding|ENSRNOT00000005048|ENSRNOG00000003714 ## ENSRNOG00000003714|protein_coding|Clk4|CDC like kinase 4 [Source:RefSeq_peptide;Acc:NP_001013059] |
block75195 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.944 | no | no | 0.48/0.63 | 18/24/0.68 | 3.0 | 2.5 | 22 | 0 | 7 | 0 | 22 | -20 | 3arm | 9 | nd | 0.35 | 3 | 22 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ---------------------------------------------AGCCCAG---------------------------------------------- | 6 | novel | ||||||
| seed | ----------------------------------------------GCCCAGU--------------------------------------------- | 4 | novel | ||||||
| seed | -------------------------------------------GGAGCCC------------------------------------------------ | 4 | novel | ||||||
| seed | ---------------------------------------------------GUGACAC---------------------------------------- | 3 | novel | ||||||
| seed | ------------------------------------------------CCAGUGA------------------------------------------- | 2 | novel | ||||||
| seed | -----------------------------------------------------GACACCA-------------------------------------- | 1 | novel | ||||||
| seed | ----------------------------------------------------------CAUCGAG--------------------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------CACCAUC------------------------------------ | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| --------------------------------------------GAGCCCAGTGACACCATCGAGAAC------------------------------ | 24 | - | 2 | - | - | 3 | - | - | |
| ------------------------------------------TGGAGCCCAGTGACACCATC------------------------------------ | 20 | - | 1 | 2 | 1 | - | - | - | |
| ---------------------------------------------AGCCCAGTGACACCATCGAGAAC------------------------------ | 23 | 1 | - | 1 | - | 1 | - | - | |
| --------------------------------------------------AGTGACACCATCGAGAAC------------------------------ | 18 | - | - | - | 1 | - | - | 1 | |
| ---------------------------------------------AGCCCAGTGACACCATCG----------------------------------- | 18 | - | - | - | - | - | 1 | - | |
| -----------------------------------------------CCCAGTGACACCATCGAGAAC------------------------------ | 21 | - | - | - | 1 | - | - | - | |
| ----------------------------------------------------TGACACCATCGAGAACGTGAA------------------------- | 21 | - | - | - | 1 | - | - | - | |
| ---------------------------------------------------------CCATCGAGAACGTGAAGGC---------------------- | 19 | - | 1 | - | - | - | - | - | |
| --------------------------------------------GAGCCCAGTGACACCATCG----------------------------------- | 19 | - | 1 | - | - | - | - | - | |
| --------------------------------------------------AGTGACACCATCGAGAACG----------------------------- | 19 | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------ACACCATCGAGAACGTGAAG------------------------ | 20 | - | 1 | - | - | - | - | - | |
| -----------------------------------------------CCCAGTGACACCATCGAGA-------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| rat | tcttcgtgaagaccctgaccggcaagaccatcaccctagaggTGGAGCCCAGTGACACCATCGAGAACGTGAAGGCcaagatccaggataaagagggc | ||||||||
| ************************************************************************************************** | |||||||||
| rat | (((((........((((...(((.......((((.((.((((((..((...))..)))).)).))...))))..)))......)))).....))))). | 0.470 -20.22 | |||||||
| rat | chromosome:10:48738998:48739095:1 | intergenic ## {Repeats: trf 374 408 0 class=trf} |
block88260 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.366 | no | no | 0.44/0.47 | 18/20/0.20 | 1.3 | 1.1 | 10 | 0 | 5 | 0 | 16 | -3 | 5arm_loop | 1 | nd | 0.32 | 3 | 10 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------CCGUGAG------------------------------------------------------ | 4 | novel | ||||
| seed | ----------------------UGAGUAU--------------------------------------------------- | 3 | novel | ||||
| seed | ------------------UCCGUGA------------------------------------------------------- | 2 | novel | ||||
| seed | -----------------CUCCGUG-------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T3S1 | T3S2 | T5S1 | |||
| ------------------TCCGTGAGTATGTACATGC------------------------------------------- | 19 | - | 2 | - | 1 | - | |
| -----------------CTCCGTGAGTATGTACATG-------------------------------------------- | 19 | - | - | 1 | 1 | - | |
| ---------------------GTGAGTATGTACATGCAG----------------------------------------- | 18 | - | - | 2 | - | - | |
| ---------------------GTGAGTATGTACATGCAGG---------------------------------------- | 19 | 1 | - | - | - | - | |
| ------------------TCCGTGAGTATGTACATGCA------------------------------------------ | 20 | - | - | 1 | - | - | |
| ----------------TCTCCGTGAGTATGTACATG-------------------------------------------- | 20 | - | - | - | - | 1 | |
| rat | tgactgactgttttggTCTCCGTGAGTATGTACATGCAGGtaggcagacattcacagacattcactgcaacagataagtt | ||||||
| ******************************************************************************** | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000009077 ENSRNOG00000023698 Tex14_predicted | ||||||
| rat | .((((..(((((.((((.((.((((..((((...(((......))).)))))))).)).....)))).)))))...)))) | 0.960 -17.50 | |||||
| rat | chromosome:10:75760043:75760122:1 | Same_strand|Boundary_non-coding|ENSRNOT00000055770|ENSRNOG00000023698 ## Same_strand|Intronic_non-coding|ENSRNOT00000009077|ENSRNOG00000023698 ## ENSRNOG00000023698|protein_coding|Tex14_predicted| |
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