other hairpins
novel_lenNOK_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH (30 loci)
block601306 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.165 | no | no | 0.42/0.42 | 19/24/0.27 | 1.4 | 2.7 | 11 | 0 | 4 | 0 | 13 | -4 | 3arm | 1 | nd | 0.32 | 3 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------UCUGCAC------------------------------ | 4 | novel | |||
| seed | --------------------------------------------GCACAUC--------------------------- | 4 | novel | |||
| seed | ------------------------------------------CUGCACA----------------------------- | 3 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S2 | T5S1 | |||
| -------------------------------------------TGCACATCAGACTTGATGA---------------- | 19 | - | - | 1 | 3 | |
| ----------------------------------------TTCTGCACATCAGACTTGA------------------- | 19 | 3 | - | - | 1 | |
| -----------------------------------------TCTGCACATCAGACTTGATGAACA------------- | 24 | - | 1 | - | 2 | |
| rat | gcttcagttctacctcttgttaatctgcagctccagtgtcTTCTGCACATCAGACTTGATGAACAagggttctccagc | |||||
| ****************************************************************************** | ||||||
| rat | (((..((....(((.((((((.(((...((((...((((.....))))...)).)).))).))))))))).))..))) | 0.580 -16.80 | ||||
| rat | chromosome:17:17534331:17534408:-1 | intergenic |
block713357 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.238 | no | no | 0.52/0.63 | 18/26/0.43 | 3.1 | 2.6 | 14 | 0 | 5 | 0 | 26 | -25 | 3arm | 1 | nd | 0.37 | 2 | 14 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ----------------------------------------------------------GACCUCC------------------------------------------ | 6 | novel | ||||
| seed | -------------------------------------------------------------CUCCAGA--------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------------CCUCUUC-------------------------------------------------- | 2 | novel | ||||
| seed | ---------------------------------------------------------------CCAGACC------------------------------------- | 2 | novel | ||||
| seed | ---------------------------------------------------CUCUUCU------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------------CUUCUGA----------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T2S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------TGACCTCCAGACCAGTTCC------------------------------- | 19 | - | 2 | 1 | - | - | |
| -------------------------------------------------TCCTCTTCTGACCTCCAGAC-------------------------------------- | 20 | 1 | - | - | 1 | - | |
| ---------------------------------------------------------TGACCTCCAGACCAGTTCCAG----------------------------- | 21 | - | - | - | 2 | - | |
| --------------------------------------------------------------TCCAGACCAGTTCCAGCCT-------------------------- | 19 | - | - | - | 2 | - | |
| ------------------------------------------------------------CCTCCAGACCAGTTCCAGC---------------------------- | 19 | - | - | - | 1 | - | |
| --------------------------------------------------CCTCTTCTGACCTCCAGACCAGTTCC------------------------------- | 26 | - | - | - | 1 | - | |
| ---------------------------------------------------------TGACCTCCAGACCAGTTCCA------------------------------ | 20 | - | - | - | 1 | - | |
| ----------------------------------------------------TCTTCTGACCTCCAGACCAGT---------------------------------- | 21 | - | - | - | - | 1 | |
| ------------------------------------------------------------CCTCCAGACCAGTTCCAG----------------------------- | 18 | - | - | - | 1 | - | |
| rat | tgactccaagctactcaccataaagcatttagagttggtccctttgatgTCCTCTTCTGACCTCCAGACCAGTTCCAGCCTtgcttactgaagggggcttttcctca | ||||||
| *********************************************************************************************************** | |||||||
| rat | .((....(((((.(((..((..(((((....((..(((((.....((.(((.......))).))..)))))..))......)))))..))..))))))))....)). | 0.780 -22.70 | |||||
| rat | chromosome:18:63583295:63583401:-1 | intergenic |
block770036 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.145 | no | no | 0.21/0.40 | 19/25/0.63 | 4.8 | 2.6 | 14 | 0 | 2 | 0 | 34 | -16 | 3arm_loop | 1 | nd | 0.35 | 2 | 19 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------GAAUUGU--------------------------------------------------------- | 7 | miR-219 | |
| seed | ---------------------------------------------------------ACACAGA---------------------------------------------- | 4 | novel | |
| seed | ------------------------------------------------------GAUACAC------------------------------------------------- | 3 | novel | |
| seed | ---------------------------------------------------GUUGAUA---------------------------------------------------- | 3 | novel | |
| seed | --------------------------------------------------UGUUGAU----------------------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------------------------------------TGAATTGTTGATACACAGATTTTT----------------------------------------- | 24 | 1 | 5 | |
| --------------------------------------------------TGTTGATACACAGATTTTT----------------------------------------- | 19 | 1 | 2 | |
| --------------------------------------------------------TACACAGATTTTTAAAGGAC---------------------------------- | 20 | - | 3 | |
| -----------------------------------------------------TGATACACAGATTTTTAAAGGAC---------------------------------- | 23 | - | 2 | |
| -------------------------------------------------TTGTTGATACACAGATTTT------------------------------------------ | 19 | - | 2 | |
| ---------------------------------------------TGAATTGTTGATACACAGATTTT------------------------------------------ | 23 | - | 1 | |
| -----------------------------------------------------TGATACACAGATTTTTAAA-------------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------TACACAGATTTTTAAAGGACGAGGG----------------------------- | 25 | - | 1 | |
| rat | agctgttgggaccacttttggagttgggttttgcttgttccttttTGAATTGTTGATACACAGATTTTTAAAGGACgagggcaggacgctagttaaagggcacatagttg | |||
| ************************************************************************************************************** | ||||
| rat | (((((.((...((.((((.....(((((((((((((..((((((..(((((((......)))).)))..))))))...))))))))).))))..))))))..))))))). | 0.810 -28.40 | ||
| rat | chromosome:19:15928380:15928489:-1 | intergenic |
block770083 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.479 | no | no | 0.33/0.68 | 18/26/0.36 | 5.5 0.0 | 5.0 0.0 | 13 1 | 0 0 | 5 1 | 0 0 | 22 11 | -16 12 | 3arm 3arm | 1 1 | nd nd | 0.42 0.37 | 4 3 | 25 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ----------------------------------------------------------GUGACAU----------------------------------- | 4 | novel | |||||
| seed | ------------------------------------------------------------GACAUGG--------------------------------- | 4 | novel | |||||
| seed | ---------------------------------------------------CCUCUUU------------------------------------------ | 4 | novel | |||||
| seed | -----------------------------------------------UCUUCCU---------------------------------------------- | 3 | novel | |||||
| seed | -------------------------------------------UUCUUCU-------------------------------------------------- | 3 | novel | |||||
| seed | --------------------------------------------------UCCUCUU------------------------------------------- | 2 | novel | |||||
| seed | -------------------------------------CCCUAUU-------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------------------------------CUUGCCU---------------------- | 1 | novel | |||||
| seed | ---------------------------------------------CUUCUUC------------------------------------------------ | 1 | novel | |||||
| seed | ------------------------------------------------------CUUUGUG--------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------AUUUCUU---------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S1 | T3S1 | T4S1 | T4S2 | T5S1 | |||
| ---------------------------------------------------------TGTGACATGGGTTCCTTGC------------------------ | 19 | - | - | - | - | - | 4 | |
| -----------------------------------------------------------TGACATGGGTTCCTTGCCT---------------------- | 19 | - | - | - | - | 1 | 2 | |
| --------------------------------------------------TCCTCTTTGTGACATGGGT------------------------------- | 19 | - | - | - | - | - | 3 | |
| ------------------------------------------TTTCTTCTTCCTCTTTGTGACA------------------------------------ | 22 | - | - | - | - | - | 2 | |
| ----------------------------------------------TTCTTCCTCTTTGTGACATG---------------------------------- | 20 | - | 1 | - | 1 | - | - | |
| -------------------------------------------------TTCCTCTTTGTGACATGGG-------------------------------- | 19 | - | - | - | - | - | 2 | |
| -----------------------------------------------------------TGACATGGGTTCCTTGCCTTGCCTCC--------------- | 26 | - | - | - | - | - | 1 | |
| ------------------------------------------TTTCTTCTTCCTCTTTGTGA-------------------------------------- | 20 | - | - | - | - | - | 1 | |
| -----------------------------------------------------TCTTTGTGACATGGGTTCCT--------------------------- | 20 | - | - | - | 1 | - | - | |
| --------------------------------------------------TCCTCTTTGTGACATGGG-------------------------------- | 18 | - | - | - | - | - | 1 | |
| --------------------------------------------TCTTCTTCCTCTTTGTGACA------------------------------------ | 20 | - | - | - | - | - | 1 | |
| ----------------------------------------TATTTCTTCTTCCTCTTTGTGACA------------------------------------ | 24 | - | - | - | 1 | - | - | |
| ----------------------------------------------TTCTTCCTCTTTGTGACAT----------------------------------- | 19 | - | - | 1 | - | - | - | |
| ----------------------------------------------------------------------CCTTGCCTTGCCTCCCGTG----------- | 19 | 1 | - | - | - | - | - | |
| ------------------------------------GCCCTATTTCTTCTTCCTCTTTG----------------------------------------- | 23 | - | - | - | - | 1 | - | |
| rat | tgcgggaatgcatgggcgaccgcctcgaactcagcagccctaTTTCTTCTTCCTCTTTGTGACATGGGTTCCTTGCCTtgcctcccgtgcgtgctcctca | |||||||
| **************************************************************************************************** | ||||||||
| rat | ((.(((.((((((((((((..((...(((((((...((....................))....)))))))...)).)))))...)))))))..))).)) | 0.720 -25.05 | ||||||
| rat | chromosome:19:15929760:15929859:-1 | intergenic |
block1213136 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.404 | no | no | 0.45/0.55 | 18/24/0.59 | 4.4 | 3.4 | 17 | 0 | 2 | 0 | 11 | -18 | 3arm_loop | 4 | nd | 0.38 | 3 | 17 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------CUGGGUC------------------------------------- | 6 | novel | |
| seed | ---------------------------CUGUGAA------------------------------- | 3 | novel | |
| seed | ----------------------------------CAUCGAU------------------------ | 2 | novel | |
| seed | -----------------------GGGUCUG----------------------------------- | 2 | novel | |
| seed | ------------------------------UGAACAU---------------------------- | 1 | novel | |
| seed | ---------------------------------ACAUCGA------------------------- | 1 | novel | |
| seed | --------------------------------AACAUCG-------------------------- | 1 | novel | |
| seed | -------------------------GUCUGUG--------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| ---------------------------------ACATCGATGGCGTCAAATCAG----------- | 21 | 2 | - | |
| --------------------ACTGGGTCTGTGAACATCGATGGC--------------------- | 24 | 1 | 1 | |
| --------------------------TCTGTGAACATCGATGGC--------------------- | 18 | - | 2 | |
| ----------------------TGGGTCTGTGAACATCGATG----------------------- | 20 | 1 | - | |
| --------------------------------AACATCGATGGCGTCAAATC------------- | 20 | - | 1 | |
| --------------------------TCTGTGAACATCGATGGCG-------------------- | 19 | 1 | - | |
| --------------------ACTGGGTCTGTGAACATCGA------------------------- | 20 | 1 | - | |
| ----------------------TGGGTCTGTGAACATCGATGGC--------------------- | 22 | 1 | - | |
| --------------------ACTGGGTCTGTGAACATC--------------------------- | 18 | - | 1 | |
| -------------------------------GAACATCGATGGCGTCAAA--------------- | 19 | - | 1 | |
| -----------------------------GTGAACATCGATGGCGTCA----------------- | 19 | 1 | - | |
| --------------------ACTGGGTCTGTGAACATCG-------------------------- | 19 | - | 1 | |
| ------------------------GGTCTGTGAACATCGATGGC--------------------- | 20 | 1 | - | |
| --------------------ACTGGGTCTGTGAACATCGATG----------------------- | 22 | 1 | - | |
| rat | agacactacttgtggtaatgACTGGGTCTGTGAACATCGATGGCGTCAAATCAGgtgggatgtct | |||
| ***************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000051293 ENSRNOG00000030590 Amy2 | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000022268 ENSRNOG00000030590 Amy2 | |||
| rat | ((((((((((((......((((...(((((....))..)))...))))...)))))))..))))) | 0.980 -15.60 | ||
| rat | chromosome:2:209511949:209512013:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000051293|ENSRNOG00000030590 ## Same_strand|Intronic_coding|ENSRNOT00000022268|ENSRNOG00000030590 ## ENSRNOG00000030590|protein_coding|Amy2|Pancreatic alpha-amylase precursor (EC 3.2.1.1) (PA) (1,4-alpha-D- glucan glucanohydrolase). [Source:UniProtKB/Swiss-Prot;Acc:P00689] |
block1748217 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.226 | no | no | 0.47/0.52 | 19/21/0.27 | 1.9 | 0.4 | 11 | 0 | 4 | 0 | 11 | -2 | 3arm | 1 | nd | 0.37 | 2 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------------------------------GCCACCU------------------------ | 7 | novel | |||
| seed | -----------------------------CUGCCAC-------------------------- | 2 | novel | |||
| seed | ---------------------------------CACCUUA---------------------- | 1 | novel | |||
| seed | --------------------------------CCACCUU----------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T3S1 | T4S2 | T5S1 | |||
| ------------------------------TGCCACCTTAGTTTGTCTG------------- | 19 | 2 | 2 | 1 | 2 | |
| ----------------------------CCTGCCACCTTAGTTTGTCTG------------- | 21 | - | - | - | 2 | |
| --------------------------------CCACCTTAGTTTGTCTGCA----------- | 19 | - | - | - | 1 | |
| -------------------------------GCCACCTTAGTTTGTCTGCA----------- | 20 | - | - | - | 1 | |
| rat | tagtgtgagaagacacctgggtccatagCCTGCCACCTTAGTTTGTCTGCAttcctacacta | |||||
| ************************************************************** | ||||||
| rat | (((((((.(((((((.((((((.((.....))..)))).))..)))))....)).))))))) | 0.970 -13.30 | ||||
| rat | chromosome:5:75287577:75287638:-1 | intergenic |
novel_lenNOK_multiarm_DicerOK (30 loci)
sblock10052 [novel_lenNOK_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.072 | no | no | 0.67/0.84 | 19/21/0.25 | 0.0 0.0 | 0.0 0.7 | 1 3 | 0 0 | 1 2 | 0 0 | 25 30 | 2 5 | 5arm 3arm | 1 1 | nd nd | 0.16 0.32 | 2 2 | 4 | 3 | 2 | 3 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------ACUCUAC------------------------------------------- | 3 | novel | ||
| seed | --------------------------CCUCCCA------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S2 | |||
| -------------------------------------------------------GACTCTACCCGGGGAGGAC-------------------------------- | 19 | 2 | - | - | |
| -------------------------TCCTCCCAGGGCGGGGCCC-------------------------------------------------------------- | 19 | - | - | 1 | |
| -------------------------------------------------------GACTCTACCCGGGGAGGACAC------------------------------ | 21 | - | 1 | - | |
| rat | tgtggtcgctggaaccacgccccttTCCTCCCAGGGCGGGGCCCggagctctgcgGACTCTACCCGGGGAGGACACcgggctttctcggttgtcttgttgctcaca | ||||
| ********************************************************************************************************** | |||||
| rat | .(((((.((.((((((..((((...(((((((.(((..((((((((....))).)).)))..))).)))))))....))))......)))..))).)).)).))). | 0.940 -46.80 | |||
| rat | chromosome:6:108681666:108681771:-1 | intergenic |
sblock10064 [novel_lenNOK_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.549 | no | no | 0.61/0.67 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 16 17 | 2 3 | 5arm 3arm | 1 1 | nd nd | 0.17 0.28 | 3 3 | 3 | 2 | 1 | 1 |
| reads | miRBase family seed | |||
| seed | -----------------CUGUUGU-------------------------------------------------------- | 2 | novel | |
| seed | ----------------------------------------------CUGUGGC--------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ----------------GCTGTTGTCACGGACCCG---------------------------------------------- | 18 | - | 2 | |
| ---------------------------------------------GCTGTGGCAGCTAGAGTG----------------- | 18 | 1 | - | |
| rat | gctccggagccaggagGCTGTTGTCACGGACCCGagtgtgtttttGCTGTGGCAGCTAGAGTGtactgcctttgtttgta | |||
| ******************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000005873 ENSRNOG00000004300 Gtf2a1 | |||
| rat | ((..(((((.(((...(((((((((((((...((((......))))))))))))))...)))...))).)))))...)). | 0.480 -22.30 | ||
| rat | chromosome:6:115208959:115209038:-1 | Same_strand|Intronic_coding|ENSRNOT00000005873|ENSRNOG00000004300 ## ENSRNOG00000004300|protein_coding|Gtf2a1|Transcription initiation factor IIA subunit 1 (General transcription factor IIA1) [Contains: Transcription initiation factor IIA alpha chain (TFIIA p35 subunit); Transcription initiation factor IIA beta chain (TFIIA p19 subunit)]. [Source:UniProtKB/Swiss-Prot;Acc:O08949] ## {SimpF: oe = 0.80 -1 CpG} |
sblock10164 [novel_lenNOK_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.130 | no | no | 0.44/0.56 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 17 13 | 0 3 | 5arm 3arm | 1 1 | nd nd | 0.28 0.22 | 2 2 | 2 | 2 | 3 | 3 |
| reads | miRBase family seed | |||
| seed | ------------------GAAAUGG---------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------GGGGGGG----------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T2S2 | |||
| ----------------------------------------------AGGGGGGGGATTCCAAAT------------- | 18 | - | 1 | |
| -----------------TGAAATGGCCTTCATAGG------------------------------------------ | 18 | 1 | - | |
| rat | gggtccctgagaattaaTGAAATGGCCTTCATAGGgattgagatctAGGGGGGGGATTCCAAATtctttggtcctct | |||
| ***************************************************************************** | ||||
| rat | (((..((.(((((((..((.(((..(((((.((((........)))).)))))..))).))))))))).))..))). | 0.850 -21.30 | ||
| rat | chromosome:6:132212636:132212712:-1 | intergenic ## {Repeats: dust 132212658 132212665 0 class=dust} |
sblock10407 [novel_lenNOK_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.324 | no | no | 0.40/0.56 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 5 4 | 7 9 | 5arm 3arm | 2 2 | nd nd | 0.35 0.28 | 3 3 | 2 | 2 | 1 | 2 |
| reads | miRBase family seed | |||
| seed | ------AGGCUAA------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------CUCUUCA-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------------------------------------CCTCTTCAAGTGCCCCAA---- | 18 | 1 | - | |
| -----AAGGCTAAACTTTGAGACAC------------------------------------------ | 20 | - | 1 | |
| rat | gggtgAAGGCTAAACTTTGAGACACagccctagatgtaggacagtCCTCTTCAAGTGCCCCAAtccc | |||
| ******************************************************************* | ||||
| rat | ((((...(((...((((.((((.((...((((....))))...))..)))).)))))))...)))). | 0.940 -15.20 | ||
| rat | chromosome:6:124485288:124485354:1 | intergenic |
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