other hairpins
novel_lenNOK_multiarm_DicerOK (30 loci)
sblock7717 [novel_lenNOK_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.041 | no | no | 0.55/0.68 | 18/20/0.60 | 0.0 0.0 0.0 0.0 | 0.0 0.0 1.0 0.0 | 1 1 2 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 8 22 28 17 | 24 10 4 5 | 5arm 5arm 5arm 3arm | 1 1 1 1 | nd nd nd nd | 0.65 0.45 0.28 0.42 | 8 7 2 5 | 5 | 4 | 2 | 1 |
| reads | miRBase family seed | |||||
| seed | -----------------------------CCGCUGU---------------------------------------------------------------- | 2 | novel | |||
| seed | -----------------------------------------------------------------GCUUGCU---------------------------- | 1 | novel | |||
| seed | ---------GGCAACA------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | -----------------------GCGUCAC---------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S2 | T3S1 | T5S1 | T5S2 | |||
| --------AGGCAACATTCAGAGGCGTC------------------------------------------------------------------------ | 20 | - | 1 | - | - | |
| ----------------------------ACCGCTGTTTGCAGTCCC------------------------------------------------------ | 18 | - | - | - | 1 | |
| ----------------------------------------------------------------GGCTTGCTGCACAGTCCCC----------------- | 19 | - | - | 1 | - | |
| ----------------------GGCGTCACCGCTGTTTGCAG---------------------------------------------------------- | 20 | 1 | - | - | - | |
| ----------------------------ACCGCTGTTTGCAGTCCCGC---------------------------------------------------- | 20 | - | - | - | 1 | |
| rat | gaaagcgaAGGCAACATTCAGAGGCGTCACCGCTGTTTGCAGTCCCGCttcttttaggcagaacGGCTTGCTGCACAGTCCCCtcctcttcttcctttcc | |||||
| **************************************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000029620 ENSRNOG00000009640 LOC682071 | |||||
| rat | (((((.(((((........(((((.......(((((..(((((.(((.((((.......)))))))...)))))))))).....))))))))))))))). | 0.830 -29.30 | ||||
| rat | chromosome:3:142080932:142081031:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000029620|ENSRNOG00000009640 ## ENSRNOG00000009640|protein_coding|LOC682071|Proteasome inhibitor PI31 subunit. [Source:UniProtKB/Swiss-Prot;Acc:Q5XIU5] |
sblock85 [novel_lenNOK_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.418 | no | no | 0.47/0.58 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 15 9 | 24 22 | 5arm 3arm | 1 1 | nd nd | 0.37 0.26 | 3 1 | 2 | 1 | 1 | 3 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------------GCAGUGG-------------------- | 1 | novel |
| seed | ----------------GGGGUAG------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| -------------------------------------------------------------------------------------AGCAGTGGGTATCAGGGCA--------- | 19 | 1 | |
| ---------------AGGGGTAGTCAACATGGTT------------------------------------------------------------------------------- | 19 | 1 | |
| rat | tgtgacggcgagctcAGGGGTAGTCAACATGGTTggtaggcctgacaccggaaggctgtggtacatccctggttcaggaatccagAGCAGTGGGTATCAGGGCAgtctgtacg | ||
| ***************************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000025122 ENSRNOG00000018524 Vil2 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046746 ENSRNOG00000018524 Vil2 | ||
| rat | .(((..(((..((((...((((.(((...((.((((....(((((.(((((..((.((.....)).))))))))))))...))))..)).))).)))).)))).)))..))). | 0.840 -37.20 |
| rat | chromosome:1:41182855:41182967:-1 | Same_strand|Intronic_coding|ENSRNOT00000046746|ENSRNOG00000018524 ## ENSRNOG00000018524|protein_coding|Vil2|Ezrin (p81) (Cytovillin) (Villin-2). [Source:UniProtKB/Swiss-Prot;Acc:P31977] |
sblock8710 [novel_lenNOK_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.016 | no | no | 0.37/0.42 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 6 7 | 9 10 | 5arm 3arm | 2 2 | nd nd | 0.21 0.42 | 2 3 | 2 | 2 | 2 | 1 |
| reads | miRBase family seed | |||
| seed | -------UGAACGU------------------------------------------------------------ | 1 | novel | |
| seed | -------------------------------------------------CCUGAAU------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| ------CTGAACGTGTGATTATTCA------------------------------------------------- | 19 | 1 | - | |
| ------------------------------------------------ACCTGAATACACGGACAAA------- | 19 | - | 1 | |
| rat | tcatcaCTGAACGTGTGATTATTCAtcccggctggaaacaagaggatgACCTGAATACACGGACAAAttttgac | |||
| ************************************************************************** | ||||
| rat | (((....((..((((((.(((.((((((....((....))...))))))..))).))))))..)).....))). | 0.980 -20.10 | ||
| rat | chromosome:4:160365986:160366059:-1 | intergenic |
sblock8726 [novel_lenNOK_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.347 | no | no | 0.45/0.47 | 19/22/0.67 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 9 3 | 1 11 | 5arm 3arm | 1 1 | nd nd | 0.16 0.50 | 3 6 | 3 | 1 | 3 | 3 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------ACACCCU----------------- | 2 | novel |
| seed | ----------GGAAAUA---------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------TACACCCTTGTGCTTTACAGAC--- | 22 | 2 | |
| ---------TGGAAATAGGGGTCTAGAG----------------------------------------- | 19 | 1 | |
| rat | gcaaaacacTGGAAATAGGGGTCTAGAGatcactctgctagttgTACACCCTTGTGCTTTACAGACggc | ||
| ********************************************************************* | |||
| rat | ........(((...(((((((((((((((....))).))))......))))))))......)))..... | 0.940 -15.70 |
| rat | chromosome:4:164232585:164232653:-1 | intergenic |
sblock8809 [novel_lenNOK_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.208 | no | no | 0.47/0.70 | 19/20/0.33 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 10 9 | 5 8 | 5arm 3arm | 1 1 | nd nd | 0.25 0.32 | 2 2 | 3 | 1 | 3 | 2 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------CUGAUGU-------------------- | 2 | novel |
| seed | -----------GGCGGGG------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| --------------------------------------------------ACTGATGTCTCAAGTCCAC--------- | 19 | 2 | |
| ----------CGGCGGGGGATGTGTGTGTC------------------------------------------------ | 20 | 1 | |
| rat | gcctggctggCGGCGGGGGATGTGTGTGTCtgtggctactctcctccgacACTGATGTCTCAAGTCCACctgctatgt | ||
| ****************************************************************************** | |||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000049474 ENSRNOG00000029308 Lrmp | ||
| rat | ((.((((.((.(((..(((((((..(((((...((.......))...)))))..)))))))..)))..)).)))).)) | 0.540 -25.30 |
| rat | chromosome:4:182770843:182770920:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000049474|ENSRNOG00000029308 ## ENSRNOG00000029308|protein_coding|Lrmp|lymphoid-restricted membrane protein Gene [Source:MGI (curated);Acc:Lrmp-001] |
sblock883 [novel_lenNOK_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.544 | no | no | 0.28/0.50 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 22 25 | 10 13 | 5arm 3arm | 1 1 | nd nd | 0.28 0.28 | 2 2 | 2 | 2 | 3 | 2 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------------GAGUUGU----------------------------------- | 1 | novel | |
| seed | -----------------------UUGUGCC------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S2 | |||
| -----------------------------------------------------------------------------AGAGTTGTGGGAGCATGT------------------------- | 18 | 1 | - | |
| ----------------------ATTGTGCCATTTTTTAAC-------------------------------------------------------------------------------- | 18 | - | 1 | |
| rat | tagctgagcttggcttgggtctATTGTGCCATTTTTTAACttctgggggctctaggttttaaatgtctctaaagggcAGAGTTGTGGGAGCATGTatcagagagaagaggtctctgttaa | |||
| ************************************************************************************************************************ | ||||
| rat | ((((.((.(((..(((.(((.((.(((.((((.((((..(((.(((((((..............))))))).)))..))))..))))..))))).)))...)))..))).))...)))). | 0.720 -28.54 | ||
| rat | chromosome:1:188668619:188668738:-1 | intergenic |
novel_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH (30 loci)
sblock10608 [novel_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.202 | no | no | 0.26/0.43 | 19/23/0.88 | 0.0 0.0 | 0.0 0.0 | 1 6 | 0 0 | 1 1 | 0 0 | 4 23 | 24 0 | 5arm 3arm | 4 4 | nd nd | 0.53 0.43 | 7 5 | 8 | 1 | 0 | 0 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------ACGAAUU-------------------------------------- | 7 | novel |
| seed | -----CUCUGAC------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------------------TACGAATTCCACAGGAGGAAAAG----------------------- | 23 | 6 | |
| --------------------------------------------------------TACGAATTCCACAGGAGGAAAA------------------------ | 22 | 1 | |
| ----TCTCTGACTTTTATGTTAA------------------------------------------------------------------------------- | 19 | 1 | |
| rat | acattctctgacttttatgttaatagtccaccataacgagttcagtgacattgcccTACGAATTCCACAGGAGGAAAAGcaagcatttttgaagagcaatgt | ||
| ****************************************************************************************************** | |||
| rat | (((((((((.......(((((.....(((.((.....((((((.(((.........)))))))))....)).)))......)))))......)))).))))) | 0.810 -20.32 |
| rat | chromosome:7:17113924:17114025:-1 | intergenic |
sblock10639 [novel_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.202 | no | no | 0.26/0.43 | 19/23/0.88 | 0.0 0.0 | 0.0 0.0 | 1 6 | 0 0 | 1 1 | 0 0 | 4 23 | 24 0 | 5arm 3arm | 4 4 | nd nd | 0.53 0.43 | 7 5 | 8 | 1 | 0 | 0 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------ACGAAUU-------------------------------------- | 7 | novel |
| seed | -----CUCUGAC------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------------------TACGAATTCCACAGGAGGAAAAG----------------------- | 23 | 6 | |
| --------------------------------------------------------TACGAATTCCACAGGAGGAAAA------------------------ | 22 | 1 | |
| ----TCTCTGACTTTTATGTTAA------------------------------------------------------------------------------- | 19 | 1 | |
| rat | acattctctgacttttatgttaatagtccaccataacgagttcagtgacattgcccTACGAATTCCACAGGAGGAAAAGcaagcatttttgaagagcaatgt | ||
| ****************************************************************************************************** | |||
| rat | (((((((((.......(((((.....(((.((.....((((((.(((.........)))))))))....)).)))......)))))......)))).))))) | 0.810 -20.32 |
| rat | chromosome:7:17375283:17375384:-1 | intergenic |
sblock11015 [novel_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.198 | no | no | 0.48/0.65 | 18/23/0.75 | 0.5 0.0 | 2.0 1.5 | 2 2 | 0 0 | 1 2 | 0 0 | 11 24 | 14 6 | 5arm 3arm | 1 1 | nd nd | 0.52 0.48 | 6 6 | 4 | 3 | -10 | -10 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------GGCUGGG--------------------------------------- | 2 | novel | ||
| seed | ------------CGGCGUA---------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------GGCGUAG--------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T5S1 | |||
| -----------CCGGCGTAGACTTAGAACGTATT------------------------------------------------------------------------- | 23 | - | - | 1 | |
| ------------------------------------------------------------GGGCTGGGTCTTTGCGCAGA--------------------------- | 20 | - | 1 | - | |
| ------------CGGCGTAGACTTAGAACG----------------------------------------------------------------------------- | 18 | - | - | 1 | |
| ------------------------------------------------------------GGGCTGGGTCTTTGCGCAGAATG------------------------ | 23 | 1 | - | - | |
| rat | agaggggggctCCGGCGTAGACTTAGAACGTATTttcggtcggtggacacttaggttcctGGGCTGGGTCTTTGCGCAGAATGtagtcggagctctggcgctcctct | ||||
| *********************************************************************************************************** | |||||
| rat | ((((((((((((((((....((......((((..(((((((((.((((......)))))))).)))))....))))......)).)))))))))))......))))) | 0.480 -38.80 | |||
| rat | chromosome:7:119936874:119936980:-1 | intergenic ## {SimpF: oe = 0.86 0 CpG} |
sblock1154 [novel_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.622 | no | no | 0.45/0.68 | 19/22/0.75 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 13 19 20 | 22 15 11 | 5arm 5arm 3arm | 2 4 4 | nd nd nd | 0.47 0.35 0.36 | 4 4 4 | 4 | 3 | -4 | 2 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------------GCCGCUU---------------------------------- | 2 | novel | ||
| seed | --------------------GCUUCAA--------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------UUUCCUG--------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S1 | T5S2 | |||
| ------------------------------------------------------------------------GGCCGCTTTGAGCCTGAGCCCT-------------------- | 22 | - | 2 | - | |
| -------------GTTTCCTGCTTCAACAGTG---------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| -------------------TGCTTCAACAGTGCTTGAAC--------------------------------------------------------------------------- | 20 | 1 | - | - | |
| rat | cagagtcgccgtgGTTTCCTGCTTCAACAGTGCTTGAACggagcctggtgctcgacccctccgaccctcgctGGCCGCTTTGAGCCTGAGCCCTttgcaacttcgtcgctctgc | ||||
| ****************************************************************************************************************** | |||||
| rat | (((((.((.((.((((....(((....(((.(((..((((((((..((...(((.......))).))..)))..))).))..))))))))).......)))).)).))))))). | 0.590 -32.80 | |||
| rat | chromosome:1:24185774:24185887:1 | intergenic |
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