other hairpins
novel_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH (30 loci)
sblock8196 [novel_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.238 | no | no | 0.26/0.48 | 19/21/0.75 | 0.0 0.0 | 0.0 0.0 | 3 1 | 0 0 | 1 1 | 0 0 | 5 5 | 6 8 | 5arm 3arm | 5 5 | nd nd | 0.43 0.37 | 3 4 | 4 | 1 | 2 | 0 |
| reads | miRBase family seed | ||
| seed | ------GCUUGUG------------------------------------------------------- | 3 | novel |
| seed | ---------------------------------------------GGGAUUU---------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----TGCTTGTGTCTAGGTTCTGAG------------------------------------------ | 21 | 3 | |
| --------------------------------------------TGGGATTTTTCATATTTGA----- | 19 | 1 | |
| rat | ggacaTGCTTGTGTCTAGGTTCTGAGctatgagtagtcacatctTGGGATTTTTCATATTTGAtgttt | ||
| ******************************************************************** | |||
| rat | .(((((...((((...((((((..((...(((....)))...))..))))))..))))....))))). | 0.670 -13.50 |
| rat | chromosome:3:140164246:140164313:1 | intergenic |
sblock8206 [novel_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.590 | no | no | 0.22/0.50 | 19/23/0.83 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 4 1 1 | 0 0 0 | 2 1 1 | 0 0 0 | 14 24 20 | 6 -3 4 | 5arm 5arm_loop 3arm | 1 2 2 | nd nd nd | 0.35 0.47 0.48 | 4 4 4 | 6 | 2 | -5 | -1 |
| reads | miRBase family seed | |||
| seed | ---------------GACCCUC------------------------------------------------------------------------ | 4 | novel | |
| seed | ----------------------------------------------------AAUAGAU----------------------------------- | 1 | novel | |
| seed | -------------------------GUGUCAU-------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------GGACCCTCTTTGTGTCATTC------------------------------------------------------------ | 20 | 1 | 3 | |
| ------------------------TGTGTCATTCGAAGTCAGT--------------------------------------------------- | 19 | - | 1 | |
| ---------------------------------------------------TAATAGATTTTTATAAGAGGTGA-------------------- | 23 | - | 1 | |
| rat | accttaataacagtGGACCCTCTTTGTGTCATTCGAAGTCAGTaatagattTAATAGATTTTTATAAGAGGTGAttcagaatgcaagattcagg | |||
| ********************************************************************************************** | ||||
| rat | .(((.(((..((.((((.((((.(((((....((.(((((.......)))))....))....)))))))))...))))...))....))).))) | 0.690 -13.80 | ||
| rat | chromosome:3:140167285:140167378:1 | intergenic |
sblock8239 [novel_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.156 | no | no | 0.39/0.58 | 19/23/0.71 | 0.0 0.0 0.0 0.5 | 0.0 0.0 0.0 0.0 | 1 1 1 4 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 3 25 19 6 | 25 10 16 25 | 5arm 3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.45 0.32 0.32 0.48 | 4 5 4 5 | 7 | 1 | -3 | 1 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------CCUGUAG-------------------- | 2 | miR-10b |
| seed | -------------------------------------------------------------------------------UCCUGUA--------------------- | 2 | novel |
| seed | ----------------------------------------------------------------------GGGCCUA------------------------------ | 1 | novel |
| seed | ----------------------------------------------------------------CACCAUG------------------------------------ | 1 | novel |
| seed | ----GUCACUG------------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------------------------------------------------TTCCTGTAGAATGAAGGTGTTCT------ | 23 | 2 | |
| -------------------------------------------------------------------------------TCCTGTAGAATGAAGGTGTTCT------ | 22 | 2 | |
| ---------------------------------------------------------------------TGGGCCTACTTCCTGTAGA------------------- | 19 | 1 | |
| ---------------------------------------------------------------TCACCATGGGCCTACTTCC------------------------- | 19 | 1 | |
| ---TGTCACTGGAGCGTGTTTAG------------------------------------------------------------------------------------ | 20 | 1 | |
| rat | aggTGTCACTGGAGCGTGTTTAGggaggacgggcttgagtgtctttcttgcacaggaggacccTCACCATGGGCCTACTTCCTGTAGAATGAAGGTGTTCTatcctg | ||
| *********************************************************************************************************** | |||
| rat | (((...((((....(((...(((((((...(((((((((.((((((((.....)))))))).)))).....))))).)))))))....)))..))))......))). | 0.660 -36.20 |
| rat | chromosome:3:141758567:141758673:1 | intergenic |
sblock8337 [novel_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.285 | no | no | 0.57/0.65 | 21/23/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 3 1 1 | 0 0 0 | 2 1 1 | 0 0 0 | 7 25 29 | 34 14 2 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.48 0.43 0.38 | 8 5 4 | 5 | 3 | 0 | 0 |
| reads | miRBase family seed | ||||
| seed | --------GCAGACG------------------------------------------------------------------------------------------------------ | 3 | novel | ||
| seed | --------------------------CCUGACA------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | --------------------------------------------------------------------GGCUCGU------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T3S2 | |||
| -------TGCAGACGCTCTCCTTCACCC----------------------------------------------------------------------------------------- | 21 | 2 | 1 | - | |
| -------------------------------------------------------------------GGGCTCGTTCTTTCCACTGGT----------------------------- | 21 | - | - | 1 | |
| -------------------------CCCTGACATCTGCCCTGGCTTCC--------------------------------------------------------------------- | 23 | - | - | 1 | |
| rat | cacgtggTGCAGACGCTCTCCTTCACCCTGACATCTGCCCTGGCTTCCgatgtttcgcccagtagttGGGCTCGTTCTTTCCACTGGTtagatgtggacaggcgtttggattgggtg | ||||
| ********************************************************************************************************************* | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000013865 ENSRNOG00000010435 NP_001102687.1 | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000032137 ENSRNOG00000010435 NP_001102687.1 | ||||
| rat | (((.((((.((((((((.(((.........(((((((((.(((.....((((....((((((...)))))).))))....)))..))).)))))))))..)))))))).)))).))) | 0.620 -38.40 | |||
| rat | chromosome:4:6369186:6369302:-1 | Same_strand|Intronic_coding|ENSRNOT00000032137|ENSRNOG00000010435 ## ENSRNOG00000010435|protein_coding|NP_001102687.1|similar to nucleoporin like 2 (predicted) (RGD1560934_predicted), mRNA [Source:RefSeq_dna;Acc:NM_001109217] |
sblock8462 [novel_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.047 | no | no | 0.41/0.50 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 16 10 | 5 10 | 5arm 3arm | 1 1 | nd nd | 0.59 0.40 | 7 4 | 2 | 2 | 4 | 8 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------CUGUGGA---------------------- | 1 | novel | |
| seed | -----------------CAAUGCC---------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ----------------ACAATGCCTTTGAAGAGTACTC-------------------------------------------------------- | 22 | - | 1 | |
| ----------------------------------------------------------------GCTGTGGAAGTTTCTCTGGA---------- | 20 | 1 | - | |
| rat | agttcagaactagaggACAATGCCTTTGAAGAGTACTCtgccccttcacaatcagggcaatggtGCTGTGGAAGTTTCTCTGGAtgcttgaact | |||
| ********************************************************************************************** | ||||
| rat | (((((((..((((((((.....((.......((((((.(((((...........)))))..))))))..))....))))))))...)).))))) | 0.700 -27.40 | ||
| rat | chromosome:4:116141512:116141605:-1 | intergenic |
sblock9335 [novel_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.629 | no | no | 0.35/0.39 | 20/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 10 2 | 18 21 | 5arm 3arm | 1 1 | nd nd | 0.35 0.39 | 4 4 | 2 | 2 | 7 | 11 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------CACAGAG----------------- | 1 | novel | |
| seed | -----------ACAUUCC-------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S2 | |||
| ----------AACATTCCTATGCTTTAGAG-------------------------------------------------------------------- | 20 | 1 | - | |
| -------------------------------------------------------------------------GCACAGAGTGTTTTATACATGTG-- | 23 | - | 1 | |
| rat | tcttttggcgAACATTCCTATGCTTTAGAGtaatgtatttccaagtagaaatttaaaaaaaatatcattaaggGCACAGAGTGTTTTATACATGTGac | |||
| ************************************************************************************************** | ||||
| rat | ((...((..((((((((...((((((....((((((((((.....(((....)))....))))).)))))))))))..))))))))....))...)). | 0.830 -14.00 | ||
| rat | chromosome:5:74862212:74862309:-1 | intergenic |
novel_5varHIGH_nonpairedHIGH (29 loci)
block367054 [novel_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.854 | no | no | 0.67/0.68 | 21/22/1.00 | 1.3 | 1.0 | 3 | 0 | 2 | 0 | 5 | 13 | 3arm | 1 | nd | 0.36 | 2 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------AGCUGCC------------------ | 2 | miR-22 | |
| seed | -----------------------------------------------------------------CCGAAGC---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| --------------------------------------------------------------------AAGCTGCCAGATCCACCGGGG----- | 21 | 2 | - | |
| ----------------------------------------------------------------CCCGAAGCTGCCAGATCCACCG-------- | 22 | - | 1 | |
| rat | gcggagagggcggggcctggagcgcggagccgcgggcgcgcttgggagggactagagcccggtgCCCGAAGCTGCCAGATCCACCGGGGgagcg | |||
| ********************************************************************************************** | ||||
| .......................................................................................................> | ENSRNOT00000005646 ENSRNOG00000004168 Slc35e4 | |||
| rat | ((.....((...((..(((((((.(((.((..(((((...((.((......)))).)))))..)))))..))).))))..)).))......)). | 0.670 -39.00 | ||
| rat | chromosome:14:84575890:84575983:-1 | intergenic |
block519935 [novel_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.102 | no | no | 0.55/0.67 | 21/22/1.00 | 2.0 | 2.5 | 2 | 0 | 1 | 0 | 6 | 20 | 3arm | 1 | nd | 0.32 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------CACCUCG------------------------ | 1 | novel |
| seed | ---------------------------------------------------------------------------------------UCGAGCG-------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| --------------------------------------------------------------------------------------CTCGAGCGGTTGGCAGATTTCA------ | 22 | 1 | |
| ----------------------------------------------------------------------------------CCACCTCGAGCGGTTGGCAGA----------- | 21 | 1 | |
| rat | cgggtccttcaggtcctacagggctcactaggagggaggacatgacacgtggcctcacatgggaggctgaaggttcagatccCCACCTCGAGCGGTTGGCAGATTTCAggaccc | ||
| ****************************************************************************************************************** | |||
| rat | .(((((((..(((((...(((.((((...(((..((.(((..((((...(((((((......)))))))...)).))..))))).))).))))..)))...))))).))))))) | 0.790 -44.60 |
| rat | chromosome:16:8169322:8169435:-1 | intergenic |
block846234 [novel_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.082 | no | no | 0.30/0.33 | 20/24/1.00 | 2.0 | 0.0 | 2 | 0 | 1 | 0 | 6 | 8 | 3arm | 4 | nd | 0.40 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------GAAGAGA------------------ | 1 | novel |
| seed | -------------------------------------------------CCAUGAA---------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------------------TCCATGAAGAGATGTATTGTTTTG------ | 24 | 1 | |
| ----------------------------------------------------TGAAGAGATGTATTGTTTTG------ | 20 | 1 | |
| rat | tagccatacttttgggtgtatttataaagctgttgaccttcaaccagcTCCATGAAGAGATGTATTGTTTTGgtctaa | ||
| ****************************************************************************** | |||
| rat | ((((((.((...((.((...(((((..((((((((.....)))).))))..)))))...)).))..))..))).))). | 0.900 -16.70 |
| rat | chromosome:1:51006222:51006299:-1 | intergenic |
block892513 [novel_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.096 | no | no | 0.50/0.53 | 19/22/0.75 | 1.2 | 0.5 | 4 | 0 | 2 | 0 | 14 | 15 | 3arm | 1 | nd | 0.36 | 3 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------------GGACUAG------------------------------ | 3 | novel | |
| seed | ------------------------------------------------------------------------------------AGGACUC------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S2 | |||
| ------------------------------------------------------------------------------AGGACTAGGACTCTGAGATTGC---------------- | 22 | - | 3 | |
| -----------------------------------------------------------------------------------TAGGACTCTGAGATTGCGG-------------- | 19 | 1 | - | |
| rat | gctagagattgccaggaagacagtgaagagccaggaagtcagatttctgctgagccaggtctgctggccggtggacagAGGACTAGGACTCTGAGATTGCGGgttggtgtggagca | |||
| ******************************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000050227 ENSRNOG00000019270 P2ry6 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000026072 ENSRNOG00000019270 P2ry6 | |||
| rat | (((......((((((.....((((..((((((....((((.....((..(((.(((((.....))))))))..)).....)))).)).))))...))))....))))))...))). | 0.970 -36.40 | ||
| rat | chromosome:1:158396770:158396885:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000026072|ENSRNOG00000019270 ## ENSRNOG00000019270|protein_coding|P2ry6|P2Y purinoceptor 6 (P2Y6). [Source:UniProtKB/Swiss-Prot;Acc:Q63371] |
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