other hairpins
novel_5varHIGH_nonpairedHIGH (29 loci)
block1060990 [novel_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.070 | no | no | 0.65/0.67 | 23/24/1.00 | 2.5 | 3.0 | 2 | 0 | 1 | 0 | 16 | 0 | 5arm | 1 | nd | 0.33 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------GAAGAGG----------------------------------------------------------------- | 1 | novel |
| seed | -----------------AGACGGA---------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------GGAAGAGGGCAGAGCCTCGGACCT------------------------------------------------- | 24 | 1 | |
| ----------------GAGACGGAAGAGGGCAGAGCCTC------------------------------------------------------- | 23 | 1 | |
| rat | gctaaaggtcttgatgGAGACGGAAGAGGGCAGAGCCTCGGACCTagcgtcaggtcccaatgggtggagttcctcaaggtctccagcccttggt | ||
| ********************************************************************************************** | |||
| rat | (((((.(((.....(((((((....((((((...((((.((((((......))))))....))))...)).))))...)))))))))).))))) | 0.560 -36.00 |
| rat | chromosome:20:5523968:5524061:-1 | intergenic |
block1067323 [novel_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.112 | no | no | 0.50/0.56 | 18/23/0.83 | 1.5 | 1.3 | 6 | 0 | 1 | 0 | 9 | 0 | 3arm | 2 | nd | 0.35 | 3 | 6 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------CUGACAU------------------------ | 3 | novel |
| seed | ---------------------------------------------ACAUCAG--------------------- | 3 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------GACATCAGACATGGCTGAGA--------- | 20 | 3 | |
| -----------------------------------------GCTGACATCAGACATGGCTG------------ | 20 | 1 | |
| -----------------------------------------GCTGACATCAGACATGGCTGAGA--------- | 23 | 1 | |
| -----------------------------------------GCTGACATCAGACATGGC-------------- | 18 | 1 | |
| rat | tccgtgtgctccagactcttgctgaaactgctcttgaaaatGCTGACATCAGACATGGCTGAGAacacaggaa | ||
| ************************************************************************* | |||
| rat | (((.((((.(((((.((..((((((....((..........)).....)))).)).))))).)).))))))). | 0.900 -18.90 |
| rat | chromosome:20:13206997:13207069:-1 | intergenic |
block1498941 [novel_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.019 | no | no | 0.30/0.33 | 19/21/0.80 | 1.4 | 1.6 | 5 | 0 | 3 | 0 | 6 | 21 | 3arm | 2 | nd | 0.38 | 3 | 5 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------------------------------------AAGUCCU------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------------------------------------AACAAGU---------------------- | 2 | novel | ||
| seed | ------------------------------------------------------------------------------------------ACAAGUC--------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T4S1 | T5S1 | |||
| ----------------------------------------------------------------------------------------AAACAAGTCCTGTATTTTCA---------- | 20 | 1 | - | 1 | |
| -------------------------------------------------------------------------------------------CAAGTCCTGTATTTTCATAGA------ | 21 | - | 1 | 1 | |
| -----------------------------------------------------------------------------------------AACAAGTCCTGTATTTTCA---------- | 19 | - | - | 1 | |
| rat | agggttacttttagaattcttctaaggacctttgaattttctgcatctacggttgagaggtatccagtctctaaaacgtagaggatcaAAACAAGTCCTGTATTTTCATAGAtaaccc | ||||
| ********************************************************************************************************************** | |||||
| rat | .((((((((...(((((.......(((((.(((((....(((...((((((....(((((.......)))))....))))))))))))))....)))))..)))))...)).)))))) | 0.530 -28.60 | |||
| rat | chromosome:3:140164762:140164879:1 | intergenic |
block1723166 [novel_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.672 | no | no | 0.41/0.50 | 20/23/1.00 | 3.4 | 3.0 | 9 | 0 | 4 | 0 | 14 | 7 | 5arm | 3 | nd | 0.36 | 3 | 9 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------UCCCGAG----------------------------------------------------------------------- | 3 | novel | |||
| seed | ---------------------CCCGAGC---------------------------------------------------------------------- | 2 | novel | |||
| seed | -----------------CAGUCCC-------------------------------------------------------------------------- | 2 | novel | |||
| seed | ---------------AUCAGUC---------------------------------------------------------------------------- | 2 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T3S1 | T5S1 | T5S2 | |||
| -------------------GTCCCGAGCAGTATTCATTTTCT-------------------------------------------------------- | 23 | 1 | 1 | - | - | |
| ----------------TCAGTCCCGAGCAGTATTCA-------------------------------------------------------------- | 20 | - | - | 2 | - | |
| --------------TATCAGTCCCGAGCAGTATTCA-------------------------------------------------------------- | 22 | - | - | 2 | - | |
| --------------------TCCCGAGCAGTATTCATTTTCT-------------------------------------------------------- | 22 | - | - | - | 2 | |
| -------------------GTCCCGAGCAGTATTCATTT----------------------------------------------------------- | 20 | 1 | - | - | - | |
| rat | tgcggtcccagtccTATCAGTCCCGAGCAGTATTCATTTTCTagtgtgagttcattacatttacccgaagactcttatgtgcgatcactatgctgcat | |||||
| ************************************************************************************************** | ||||||
| ------------------------------------------------------------------------------------------------------------ | ENSRNOT00000047859 ENSRNOG00000024953 LOC678820 | |||||
| rat | ((((((...(((...(((.((...(((.(((.(((.......(((((((.....))))))).....))).))))))....))))).)))..)))))). | 0.610 -16.90 | ||||
| rat | chromosome:5:25427827:25427924:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000041129|ENSRNOG00000024953 ## Opposite_strand|Intronic_coding|ENSRNOT00000047859|ENSRNOG00000024953 ## ENSRNOG00000024953|protein_coding|LOC678820| |
block1886247 [novel_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.276 | no | no | 0.57/0.57 | 21/23/1.00 | 3.3 | 2.0 | 3 | 0 | 3 | 0 | 13 | 17 | 5arm | 1 | nd | 0.35 | 3 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------UGGGGGU------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | --------------UGGGAUG------------------------------------------------------------------------------------------ | 1 | miR-30b | ||
| len | cloning frequencies | ||||
| T2S2 | T3S1 | T3S2 | |||
| ------------------ATGGGGGTTGTTCTAGGGGAG------------------------------------------------------------------------ | 21 | - | 1 | 1 | |
| -------------ATGGGATGGGGGTTGTTCTAGGG--------------------------------------------------------------------------- | 23 | 1 | - | - | |
| rat | ctaaggcattaggATGGGATGGGGGTTGTTCTAGGGGAGttaggaaagtgaccttgacagcgtagagttacctgaatcacctgtttagctaattcattctgtgtgaccttg | ||||
| *************************************************************************************************************** | |||||
| rat | .((((((((((((((.((((...(((((...((((.((.(((((....((((((((....)).)).))))))))).)).))))..))))).)))))))))).))).))))) | 0.610 -28.20 | |||
| rat | chromosome:5:150935045:150935155:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (29 loci)
block126017 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.926 | no | no | 0.72/0.89 | 18/25/0.08 | 0.0 0.3 1.5 | 0.0 1.7 1.4 | 1 3 8 | 0 0 0 | 1 2 4 | 0 0 0 | 15 19 25 | -4 -14 -17 | 5arm_loop 5arm_loop 5arm_loop_3arm | 7 8 8 | nd nd nd | 0.58 0.63 0.79 | 5 10 14 | 12 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -----------------------------CCGCCGC----------------------------------------------- | 4 | novel | |||||
| seed | --------------------------CCGCCGC-------------------------------------------------- | 4 | novel | |||||
| seed | --------------------GCCGCGC-------------------------------------------------------- | 2 | novel | |||||
| seed | ---------------------CCGCGCC------------------------------------------------------- | 1 | novel | |||||
| seed | ----------------CUUCGCC------------------------------------------------------------ | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T4S2 | T5S1 | |||
| -------------------------GCCGCCGCCGCTCTCTAAC--------------------------------------- | 19 | 1 | - | 1 | - | - | 2 | |
| ----------------------------GCCGCCGCTCTCTAACGCC------------------------------------ | 19 | 1 | 2 | - | - | - | - | |
| -------------------CGCCGCGCCGCCGCCGCTCTCTAAC--------------------------------------- | 25 | - | - | - | 1 | - | - | |
| --------------------GCCGCGCCGCCGCCGCTCT-------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| -------------------CGCCGCGCCGCCGCCGCTCTCT------------------------------------------ | 22 | - | - | - | 1 | - | - | |
| ----------------------------GCCGCCGCTCTCTAACGC------------------------------------- | 18 | 1 | - | - | - | - | - | |
| ---------------CCTTCGCCGCGCCGCCGCC------------------------------------------------- | 19 | - | - | 1 | - | - | - | |
| rat | ctccggtgttcgcagCCTTCGCCGCGCCGCCGCCGCTCTCTAACGCCagcgccgcctcttgcttgctgagctccagccgaagg | |||||||
| *********************************************************************************** | ||||||||
| rat | ((.(((((((((((((....((.((((.((..............))..)))).)).....))).)).))))....)))).)). | 0.660 -22.24 | ||||||
| rat | chromosome:11:53935753:53935835:-1 | intergenic |
block126021 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.926 | no | no | 0.72/0.89 | 18/25/0.08 | 0.0 0.3 1.5 | 0.0 1.7 1.4 | 1 3 8 | 0 0 0 | 1 2 4 | 0 0 0 | 15 19 25 | -4 -14 -17 | 5arm_loop 5arm_loop 5arm_loop_3arm | 7 8 8 | nd nd nd | 0.58 0.63 0.79 | 5 10 14 | 12 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -----------------------------CCGCCGC----------------------------------------------- | 4 | novel | |||||
| seed | --------------------------CCGCCGC-------------------------------------------------- | 4 | novel | |||||
| seed | --------------------GCCGCGC-------------------------------------------------------- | 2 | novel | |||||
| seed | ---------------------CCGCGCC------------------------------------------------------- | 1 | novel | |||||
| seed | ----------------CUUCGCC------------------------------------------------------------ | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T4S2 | T5S1 | |||
| -------------------------GCCGCCGCCGCTCTCTAAC--------------------------------------- | 19 | 1 | - | 1 | - | - | 2 | |
| ----------------------------GCCGCCGCTCTCTAACGCC------------------------------------ | 19 | 1 | 2 | - | - | - | - | |
| -------------------CGCCGCGCCGCCGCCGCTCTCTAAC--------------------------------------- | 25 | - | - | - | 1 | - | - | |
| --------------------GCCGCGCCGCCGCCGCTCT-------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| -------------------CGCCGCGCCGCCGCCGCTCTCT------------------------------------------ | 22 | - | - | - | 1 | - | - | |
| ----------------------------GCCGCCGCTCTCTAACGC------------------------------------- | 18 | 1 | - | - | - | - | - | |
| ---------------CCTTCGCCGCGCCGCCGCC------------------------------------------------- | 19 | - | - | 1 | - | - | - | |
| rat | ctccggtgttcgcagCCTTCGCCGCGCCGCCGCCGCTCTCTAACGCCagcgccgcctcttgcttgctgagctccagccgaagg | |||||||
| *********************************************************************************** | ||||||||
| rat | ((.(((((((((((((....((.((((.((..............))..)))).)).....))).)).))))....)))).)). | 0.660 -22.24 | ||||||
| rat | chromosome:11:53936862:53936944:-1 | intergenic |
block234805 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.127 | no | no | 0.35/0.53 | 18/24/0.35 | 0.0 1.5 | 0.0 2.6 | 7 8 | 0 0 | 3 2 | 0 0 | 9 14 | -3 -15 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.32 0.38 | 4 7 | 17 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------CCCCUAU---------------------------------------- | 9 | novel | |||
| seed | -----------------GGGUCAG--------------------------------- | 6 | novel | |||
| seed | ---------------AUGGGUC----------------------------------- | 2 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T3S1 | T4S2 | T5S1 | |||
| ---------TCCCCTATGGGTCAGTCTT----------------------------- | 19 | 1 | - | 1 | 7 | |
| ----------------TGGGTCAGTCTTAAAAACGAGTC------------------ | 23 | - | 1 | - | 2 | |
| --------------TATGGGTCAGTCTTAAAAAC----------------------- | 20 | - | - | - | 2 | |
| ----------------TGGGTCAGTCTTAAAAAC----------------------- | 18 | - | - | - | 2 | |
| ----------------TGGGTCAGTCTTAAAAACGAGTCC----------------- | 24 | - | - | - | 1 | |
| rat | tgtggagatTCCCCTATGGGTCAGTCTTaaaaacgagtccggggggaggggtgcaca | |||||
| ********************************************************* | ||||||
| rat | .(((....(((((((.((((((.((.......)))).))))))))))).....))). | 1.000 -16.50 | ||||
| rat | chromosome:12:44302204:44302260:1 | intergenic |
block255641 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.125 | no | no | 0.58/0.64 | 18/24/0.13 | 0.0 1.6 | 0.0 1.3 | 1 14 | 0 0 | 1 6 | 0 0 | 47 39 | -15 -4 | 5arm_loop_3arm 3arm | 1 2 | nd nd | 0.33 0.42 | 6 8 | 15 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -----------------------------------------------------CAGCAGG-------------------------------------------------------- | 6 | miR-214 | |||||
| seed | --------------------------------------------------------CAGGUAG----------------------------------------------------- | 6 | novel | |||||
| seed | ---------------------------------------------------------AGGUAGC---------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------UGGUGCA------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------------------GUAGCAG-------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | |||
| -------------------------------------------------------GCAGGTAGCAGTGACCCTC------------------------------------------ | 19 | - | - | 1 | 1 | 3 | 1 | |
| ----------------------------------------------------GCAGCAGGTAGCAGTGACC--------------------------------------------- | 19 | - | 1 | 1 | - | 1 | - | |
| ----------------------------------------------------GCAGCAGGTAGCAGTGACCCTC------------------------------------------ | 22 | 1 | - | - | - | - | - | |
| --------------------------------------------------------CAGGTAGCAGTGACCCTC------------------------------------------ | 18 | - | - | - | - | 1 | - | |
| -----------------------------------------------CTGGTGCAGCAGGTAGCA--------------------------------------------------- | 18 | - | - | - | 1 | - | - | |
| ----------------------------------------------------------GGTAGCAGTGACCCTCTGA--------------------------------------- | 19 | - | - | - | 1 | - | - | |
| ----------------------------------------------------GCAGCAGGTAGCAGTGACCCTCTG---------------------------------------- | 24 | - | - | - | - | 1 | - | |
| ----------------------------------------------------GCAGCAGGTAGCAGTGAC---------------------------------------------- | 18 | - | 1 | - | - | - | - | |
| rat | tgtttttataaaagtccggttcgggccagaaacttcaattttgttgcCTGGTGCAGCAGGTAGCAGTGACCCTCTGAggcgtttggtgctccggtagctaccagggctggagagcg | |||||||
| ******************************************************************************************************************** | ||||||||
| ...........................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000061220 ENSRNOG00000003866 Cxcr4 | |||||||
| rat | .((((((.....((((((((((((((((((..(((((...((((((((((......))))))))))........)))))..))))))...)))).....))).))))).)))))). | 0.830 -40.20 | ||||||
| rat | chromosome:13:41312125:41312240:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000061220|ENSRNOG00000003866 ## ENSRNOG00000003866|protein_coding|Cxcr4|C-X-C chemokine receptor type 4 (CXC-R4) (CXCR-4) (Stromal cell- derived factor 1 receptor) (SDF-1 receptor) (Fusin) (Leukocyte-derived seven transmembrane domain receptor) (LESTR) (CD184 antigen). [Source:UniProtKB/Swiss-Prot;Acc:O08565] |
block439594 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.208 | no | no | 0.50/0.65 | 18/20/0.15 | 1.3 0.5 0.0 0.5 | 1.3 0.2 0.0 0.0 | 6 4 1 2 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 3 12 17 24 | 4 -1 -6 -12 | 5arm 5arm_loop 5arm_loop 5arm_loop_3arm | 3 3 3 3 | nd nd nd nd | 0.32 0.42 0.65 0.68 | 4 4 7 9 | 13 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------GGCAGAA------------------------------------------------------- | 3 | novel | |
| seed | -----UGAGCUG--------------------------------------------------------------- | 2 | novel | |
| seed | ----CUGAGCU---------------------------------------------------------------- | 2 | novel | |
| seed | ---------------CAGAACG----------------------------------------------------- | 1 | novel | |
| seed | ------------------AACGGAC-------------------------------------------------- | 1 | novel | |
| seed | -------AGCUGAG------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------CACUCAU------------------------------------------ | 1 | novel | |
| seed | -------------------------ACACUCA------------------------------------------- | 1 | novel | |
| seed | ---------CUGAGGC----------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| ------------AGGCAGAACGGACACACTC-------------------------------------------- | 19 | 3 | - | |
| ----CTGAGCTGAGGCAGAACG----------------------------------------------------- | 18 | - | 2 | |
| --------GCTGAGGCAGAACGGACAC------------------------------------------------ | 19 | 1 | - | |
| -----------------GAACGGACACACTCATGCAG-------------------------------------- | 20 | 1 | - | |
| --------------GCAGAACGGACACACTCA------------------------------------------- | 18 | 1 | - | |
| ------------------------CACACTCATGCAGAAGGAC-------------------------------- | 19 | 1 | - | |
| ---GCTGAGCTGAGGCAGAACG----------------------------------------------------- | 19 | 1 | - | |
| ------GAGCTGAGGCAGAACGGA--------------------------------------------------- | 18 | - | 1 | |
| -------------------------ACACTCATGCAGAAGGAC-------------------------------- | 18 | 1 | - | |
| ---GCTGAGCTGAGGCAGAACGG---------------------------------------------------- | 20 | 1 | - | |
| rat | agaGCTGAGCTGAGGCAGAACGGACACACTCATGCAGAAGGACaagtgccacatgcctcctcggagcctgctctg | |||
| *************************************************************************** | ||||
| .................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000060295 ENSRNOG00000039345 | |||
| rat | (((((...(((((((((....((.(((..((.........))...)))))...)))))).....)))..))))). | 0.990 -22.20 | ||
| rat | chromosome:15:30984805:30984879:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000060295|ENSRNOG00000039345 ## ENSRNOG00000039345|protein_coding|| |
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