other hairpins
novel_loopOverlap_mirtron (29 loci)
block2358179 [novel_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.071 | no | no | 0.45/0.45 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 37 | -1 | 3arm | 1 | 3 | 0.25 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------UCGGUAA------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| -------------------------------------------------------------TTCGGTAAAGTCTTCTTGGG------------------------------------- | 20 | 1 | |
| rat | cgcaggctgtgggggctgctgcgagtgcttctgtgaggtgttagaaggctgctgcgggtgcTTCGGTAAAGTCTTCTTGGGctgcggcgagtgcttctgtaaggtcttcttgggctgc | ||
| ********************************************************************************************************************** | |||
| ++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>> | ENSRNOT00000056100 ENSRNOG00000037167 NP_001101660.1 | ||
| rat | .((((.(((.(((((((..((((((..(((((((..(((...((((((((..(((.((....)).))).))))))))...))))))).)))..)))..))).))))))).))).)))) | 0.930 -45.90 |
| rat | chromosome:8:115388664:115388781:-1 | Same_strand|Boundary_coding|ENSRNOT00000056100|ENSRNOG00000037167 ## ENSRNOG00000037167|protein_coding|NP_001101660.1|transmembrane protein 7 [Source:RefSeq_peptide;Acc:NP_001101660] ## {Repeats: trf 40 60 0 class=trf} |
block2624891 [novel_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.438 | no | no | 0.45/0.45 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 28 | -1 | 3arm | 1 | 3 | 0.27 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------UGACCUG------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| -----------------------------------------------------CTGACCTGATGTTCTTTCTCAC---------------------------- | 22 | 1 | |
| rat | gcgtgtacatgtgtaagcactgtgtaggtagatgaccttgtctctgttacataCTGACCTGATGTTCTTTCTCACcagcagtgtctttggaacagtgcctgtg | ||
| ******************************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000021309 ENSRNOG00000015619 NUPL_RAT | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000032009 ENSRNOG00000015619 NUPL_RAT | ||
| rat | (((.((((.(((..(((((((((...((((((.((...((((...((((.....))))..)))).))..))).))).)))))).)))....))))))).))). | 0.950 -25.50 |
| rat | chromosome:9:82206082:82206184:1 | Same_strand|Intronic_coding|ENSRNOT00000021309|ENSRNOG00000015619 ## ENSRNOG00000015619|protein_coding|NUPL_RAT|Nucleoporin-like protein RIP (HIV-1 Rev-binding protein homolog). [Source:UniProtKB/Swiss-Prot;Acc:Q4KLH5] |
block1551488 [novel_loopOverlap_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.028 | no | no | 0.67/0.67 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 19 | -1 | 3arm | 1 | 0 | 0.24 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------GUGCUCC-------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ------------------------------------GGTGCTCCACAGAGAAGCCCC------------------- | 21 | 1 | |
| rat | agctccaagctttcggtggctgctcgggggcgccttGGTGCTCCACAGAGAAGCCCCtgttcagccctcctggtgc | ||
| **************************************************************************** | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000024428 ENSRNOG00000017911 RGD1565474_predicted | ||
| rat | .((.(((.(((..(((.((((.(((.(((((((....)))))))...))).)))).)))...))).....))).)) | 0.800 -34.00 |
| rat | chromosome:4:70544255:70544330:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000024428|ENSRNOG00000017911 ## ENSRNOG00000017911|protein_coding|RGD1565474_predicted| |
novel_multiarm_DicerNOK_Multihit_loopOverlap (29 loci)
sblock10578 [novel_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.015 | no | no | 0.50/0.57 | 21/22/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 4 53 12 | 28 -21 26 | 5arm 5arm_loop_3arm 3arm | 20 35 35 | nd nd nd | 0.36 0.59 0.24 | 3 7 3 | 3 | 2 | -7 | -5 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------------------------UGUGAUG------------------------- | 1 | novel | |
| seed | ------------------------------------------------------ACCUUCC----------------------------------------------------------- | 1 | novel | |
| seed | -----ACUCGGG------------------------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T2S1 | |||
| ----AACTCGGGCCCATGGAAACAGT---------------------------------------------------------------------------------------------- | 22 | 1 | - | |
| -----------------------------------------------------AACCTTCCTGCAAAGGCCATTG--------------------------------------------- | 22 | - | 1 | |
| ---------------------------------------------------------------------------------------GTGTGATGCTGTACCCATCCC------------ | 21 | 1 | - | |
| rat | aagtAACTCGGGCCCATGGAAACAGTggcatggttcatgccaaattccgaagcAACCTTCCTGCAAAGGCCATTGgacacagaatccGTGTGATGCTGTACCCATCCCggatttaaacta | |||
| ************************************************************************************************************************ | ||||
| rat | .(((((..((((...((((..(((((.(((((((((.((((((...((...(((.......)))...))...)))).))..))).))))))...)))))..))))))))..))...))). | 0.520 -34.50 | ||
| rat | chromosome:7:11006585:11006704:-1 | intergenic |
sblock11994 [novel_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.011 | no | no | 0.50/0.57 | 19/22/0.75 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 4 18 53 12 | 28 17 -21 26 | 5arm 5arm 5arm_loop_3arm 3arm | 20 23 35 35 | nd nd nd nd | 0.36 0.16 0.59 0.24 | 3 2 7 3 | 4 | 3 | 6 | 6 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------------------------------UGUGAUG------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------ACCUUCC----------------------------------------------------------- | 1 | novel | ||
| seed | -------------------AAACAGU---------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----ACUCGGG------------------------------------------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S1 | T4S1 | |||
| ----AACTCGGGCCCATGGAAACAGT---------------------------------------------------------------------------------------------- | 22 | 1 | - | - | |
| ------------------GAAACAGTGGCATGGTTCG----------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| -----------------------------------------------------AACCTTCCTGCAAAGGCCATTG--------------------------------------------- | 22 | - | 1 | - | |
| ---------------------------------------------------------------------------------------GTGTGATGCTGTACCCATCCC------------ | 21 | 1 | - | - | |
| rat | aagtAACTCGGGCCCATGGAAACAGTGGCATGGTTCGtgccaaattccaaagcAACCTTCCTGCAAAGGCCATTGgacactgaatccGTGTGATGCTGTACCCATCCCggatttaaacta | ||||
| ************************************************************************************************************************ | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000018054 ENSRNOG00000013049 Treh | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049797 ENSRNOG00000013049 Treh | ||||
| rat | .(((((..((((...((((..(((((.((((((((((((((((...((...(((.......)))...))...)))).))).))).))))))...)))))..))))))))..))...))). | 0.910 -37.10 | |||
| rat | chromosome:8:47634019:47634138:1 | Same_strand|Intronic_coding|ENSRNOT00000049797|ENSRNOG00000013049 ## ENSRNOG00000013049|protein_coding|Treh|Alpha,alpha-trehalase (EC 3.2.1.28) (Fragment). [Source:UniProtKB/TrEMBL;Acc:O70282] |
sblock1371 [novel_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.041 | no | no | 0.50/0.59 | 19/24/0.88 | 0.5 0.0 | 1.8 0.2 | 4 4 | 0 0 | 2 1 | 0 0 | 10 13 | -7 -2 | 5arm 3arm_loop | 44 44 | nd nd | 0.25 0.23 | 3 2 | 8 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | -------------------------------CCAGUGU---------------------------- | 4 | miR-199a | |
| seed | -------------AGCAGGA---------------------------------------------- | 3 | novel | |
| seed | -----------GUAGCAG------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| ------------------------------TCCAGTGTGGCTTCTGTCCCAGT------------- | 23 | - | 3 | |
| ------------TAGCAGGACATCCACTGTTCCAGT------------------------------ | 24 | - | 3 | |
| ------------------------------TCCAGTGTGGCTTCTGTCCCAG-------------- | 22 | - | 1 | |
| ----------TGTAGCAGGACATCCACTG------------------------------------- | 19 | 1 | - | |
| rat | tgatgtgcacTGTAGCAGGACATCCACTGTTCCAGTGTGGCTTCTGTCCCAGTacctccactatca | |||
| ****************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049496 ENSRNOG00000031160 LOC685793 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042408 ENSRNOG00000031160 LOC685793 | |||
| ---------------------------------------------------------------------------- | ENSRNOT00000059958 ENSRNOG00000030545 LOC685793 | |||
| ---------------------------------------------------------------------------- | ENSRNOT00000049483 ENSRNOG00000030545 LOC685793 | |||
| ---------------------------------------------------------------------------- | ENSRNOT00000039913 ENSRNOG00000030545 LOC685793 | |||
| rat | .((((((.((((..((((((..(((((((...))))).)).))))))..)))).....))).))). | 0.890 -18.70 | ||
| rat | chromosome:1:50084184:50084249:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000039913|ENSRNOG00000030545 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000059959|ENSRNOG00000030545 ## Same_strand|Boundary_non-coding|ENSRNOT00000050327|ENSRNOG00000031160 ## Same_strand|Intronic_non-coding|ENSRNOT00000042408|ENSRNOG00000031160 ## Opposite_strand|Intronic_coding|ENSRNOT00000059958|ENSRNOG00000030545 ## ENSRNOG00000030545|protein_coding|LOC685793| ## ENSRNOG00000031160|protein_coding|LOC685793| |
sblock1457 [novel_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.041 | no | no | 0.50/0.59 | 19/24/0.88 | 0.5 0.0 | 1.8 0.2 | 4 4 | 0 0 | 2 1 | 0 0 | 10 13 | -7 -2 | 5arm 3arm_loop | 44 44 | nd nd | 0.25 0.23 | 3 2 | 8 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | -------------------------------CCAGUGU---------------------------- | 4 | miR-199a | |
| seed | -------------AGCAGGA---------------------------------------------- | 3 | novel | |
| seed | -----------GUAGCAG------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| ------------------------------TCCAGTGTGGCTTCTGTCCCAGT------------- | 23 | - | 3 | |
| ------------TAGCAGGACATCCACTGTTCCAGT------------------------------ | 24 | - | 3 | |
| ------------------------------TCCAGTGTGGCTTCTGTCCCAG-------------- | 22 | - | 1 | |
| ----------TGTAGCAGGACATCCACTG------------------------------------- | 19 | 1 | - | |
| rat | tgatgtgcacTGTAGCAGGACATCCACTGTTCCAGTGTGGCTTCTGTCCCAGTacctccactatca | |||
| ****************************************************************** | ||||
| rat | .((((((.((((..((((((..(((((((...))))).)).))))))..)))).....))).))). | 0.890 -18.70 | ||
| rat | chromosome:1:51429642:51429707:1 | intergenic |
sblock1489 [novel_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.041 | no | no | 0.50/0.59 | 19/24/0.88 | 0.5 0.0 | 1.8 0.2 | 4 4 | 0 0 | 2 1 | 0 0 | 10 13 | -7 -2 | 5arm 3arm_loop | 44 44 | nd nd | 0.25 0.23 | 3 2 | 8 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | -------------------------------CCAGUGU---------------------------- | 4 | miR-199a | |
| seed | -------------AGCAGGA---------------------------------------------- | 3 | novel | |
| seed | -----------GUAGCAG------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| ------------------------------TCCAGTGTGGCTTCTGTCCCAGT------------- | 23 | - | 3 | |
| ------------TAGCAGGACATCCACTGTTCCAGT------------------------------ | 24 | - | 3 | |
| ------------------------------TCCAGTGTGGCTTCTGTCCCAG-------------- | 22 | - | 1 | |
| ----------TGTAGCAGGACATCCACTG------------------------------------- | 19 | 1 | - | |
| rat | tgatgtgcacTGTAGCAGGACATCCACTGTTCCAGTGTGGCTTCTGTCCCAGTacctccactatca | |||
| ****************************************************************** | ||||
| ---------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | .((((((.((((..((((((..(((((((...))))).)).))))))..)))).....))).))). | 0.890 -18.70 | ||
| rat | chromosome:1:51546237:51546302:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1506 [novel_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.041 | no | no | 0.50/0.59 | 19/24/0.88 | 0.5 0.0 | 1.8 0.2 | 4 4 | 0 0 | 2 1 | 0 0 | 10 13 | -7 -2 | 5arm 3arm_loop | 44 44 | nd nd | 0.25 0.23 | 3 2 | 8 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | -------------------------------CCAGUGU---------------------------- | 4 | miR-199a | |
| seed | -------------AGCAGGA---------------------------------------------- | 3 | novel | |
| seed | -----------GUAGCAG------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| ------------------------------TCCAGTGTGGCTTCTGTCCCAGT------------- | 23 | - | 3 | |
| ------------TAGCAGGACATCCACTGTTCCAGT------------------------------ | 24 | - | 3 | |
| ------------------------------TCCAGTGTGGCTTCTGTCCCAG-------------- | 22 | - | 1 | |
| ----------TGTAGCAGGACATCCACTG------------------------------------- | 19 | 1 | - | |
| rat | tgatgtgcacTGTAGCAGGACATCCACTGTTCCAGTGTGGCTTCTGTCCCAGTacctccactatca | |||
| ****************************************************************** | ||||
| ---------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | .((((((.((((..((((((..(((((((...))))).)).))))))..)))).....))).))). | 0.890 -18.70 | ||
| rat | chromosome:1:51604745:51604810:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1528 [novel_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.041 | no | no | 0.50/0.59 | 19/24/0.88 | 0.5 0.0 | 1.8 0.2 | 4 4 | 0 0 | 2 1 | 0 0 | 10 13 | -7 -2 | 5arm 3arm_loop | 44 44 | nd nd | 0.25 0.23 | 3 2 | 8 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | -------------------------------CCAGUGU---------------------------- | 4 | miR-199a | |
| seed | -------------AGCAGGA---------------------------------------------- | 3 | novel | |
| seed | -----------GUAGCAG------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| ------------------------------TCCAGTGTGGCTTCTGTCCCAGT------------- | 23 | - | 3 | |
| ------------TAGCAGGACATCCACTGTTCCAGT------------------------------ | 24 | - | 3 | |
| ------------------------------TCCAGTGTGGCTTCTGTCCCAG-------------- | 22 | - | 1 | |
| ----------TGTAGCAGGACATCCACTG------------------------------------- | 19 | 1 | - | |
| rat | tgatgtgcacTGTAGCAGGACATCCACTGTTCCAGTGTGGCTTCTGTCCCAGTacctccactatca | |||
| ****************************************************************** | ||||
| ---------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040973 ENSRNOG00000033340 RGD1561446_predicted | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046337 ENSRNOG00000033340 RGD1561446_predicted | |||
| rat | .((((((.((((..((((((..(((((((...))))).)).))))))..)))).....))).))). | 0.890 -18.70 | ||
| rat | chromosome:1:51659148:51659213:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Same_strand|Boundary_non-coding|ENSRNOT00000048434|ENSRNOG00000033340 ## Same_strand|Intronic_non-coding|ENSRNOT00000046337|ENSRNOG00000033340 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| ## ENSRNOG00000033340|protein_coding|RGD1561446_predicted| |
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