other hairpins
novel_lenNOK_cloningOK_loopOverlap_randfoldOK (28 loci)
block1702130 [novel_lenNOK_cloningOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.39/0.45 | 18/20/0.09 | 0.3 | 0.5 | 11 | 0 | 7 | 0 | 6 | -1 | 5arm_loop | 2 | nd | 0.22 | 2 | 11 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -------CAGAAGA------------------------------------------------ | 9 | novel | ||||||
| seed | ---------GAAGAUC---------------------------------------------- | 1 | novel | ||||||
| seed | --------AGAAGAU----------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T2S2 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------TCAGAAGATCTGTGAAGA-------------------------------------- | 18 | 2 | 1 | 1 | 1 | 2 | 2 | - | |
| -------CAGAAGATCTGTGAAGAG------------------------------------- | 18 | - | - | - | - | - | - | 1 | |
| --------AGAAGATCTGTGAAGAGCCA---------------------------------- | 20 | - | - | - | 1 | - | - | - | |
| rat | caggggTCAGAAGATCTGTGAAGAGCCActgggctcccacagtctcctgagttagttccttg | ||||||||
| ************************************************************** | |||||||||
| rat | ((((((((((.(((.(((((..(((((....))))).)))))))).))))......)))))) | 1.000 -25.80 | |||||||
| rat | chromosome:4:173352781:173352842:1 | intergenic |
block1794161 [novel_lenNOK_cloningOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.61/0.65 | 18/20/0.42 | 0.0 | 0.5 | 12 | 0 | 6 | 0 | 35 | -4 | 5arm_loop_3arm | 1 | nd | 0.30 | 3 | 12 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ------------------------------------GGGGAUU--------------------------------------------------------------- | 12 | novel | |||||
| len | cloning frequencies | |||||||
| T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| -----------------------------------GGGGGATTAGCTCAGCTGG---------------------------------------------------- | 19 | 1 | 3 | 1 | - | - | 1 | |
| -----------------------------------GGGGGATTAGCTCAGCTGGG--------------------------------------------------- | 20 | 1 | - | 1 | 2 | - | 1 | |
| -----------------------------------GGGGGATTAGCTCAGCTG----------------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| rat | ggcctgggcctgtttgtgttggccctgccaggcggGGGGGATTAGCTCAGCTGGGctgctaattgcctccaaagtgccggccgggctgctgacaagggctgggcct | |||||||
| ********************************************************************************************************** | ||||||||
| rat | (((((((.((((((.((...(((((.(((.((((((((.(((((((..(((...)))))))))).))))).....)))))).))))))).)))).)).))))))). | 1.000 -59.10 | ||||||
| rat | chromosome:5:156087459:156087564:-1 | intergenic |
block1894674 [novel_lenNOK_cloningOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.14/0.18 | 18/22/0.24 | 0.2 | 1.0 | 17 | 0 | 8 | 0 | 5 | -5 | 5arm_loop_3arm | 1 | nd | 0.26 | 3 | 17 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | -------UGGAAUA------------------------------------- | 13 | novel | |||||||
| seed | --------GGAAUAG------------------------------------ | 2 | novel | |||||||
| seed | ------UUGGAAU-------------------------------------- | 2 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | |||
| ------TTGGAATAGTTTATTTTT--------------------------- | 18 | 2 | 1 | - | 1 | 1 | 2 | 2 | - | |
| ------TTGGAATAGTTTATTTTTT-------------------------- | 19 | - | - | 1 | - | - | - | 1 | 1 | |
| -----TTTGGAATAGTTTATTTTTT-------------------------- | 20 | - | 1 | - | - | - | - | - | - | |
| ------TTGGAATAGTTTATTTTTTAAA----------------------- | 22 | 1 | - | - | - | - | - | - | - | |
| -------TGGAATAGTTTATTTTTTAAA----------------------- | 21 | - | - | - | 1 | - | - | - | - | |
| -----TTTGGAATAGTTTATTTTT--------------------------- | 19 | - | - | 1 | - | - | - | - | - | |
| -------TGGAATAGTTTATTTTTTAAAC---------------------- | 22 | - | - | - | - | - | 1 | - | - | |
| rat | gaaggTTTGGAATAGTTTATTTTTTAAACaggattagacctccgggccttc | |||||||||
| *************************************************** | ||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049610 ENSRNOG00000037062 | |||||||||
| rat | (((((((((((...(((((.((((.....)))).))))).))))))))))) | 0.740 -17.00 | ||||||||
| rat | chromosome:5:160433416:160433466:1 | Same_strand|Intronic_coding|ENSRNOT00000049610|ENSRNOG00000037062 ## ENSRNOG00000037062|protein_coding|| |
block1904977 [novel_lenNOK_cloningOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 18 | 0 | 2 | 0 | 34 | -3 | 3arm_loop | 1 | nd | 0.28 | 2 | 18 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------GGAGUGU-------------------------------------------- | 18 | miR-122 | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| ------------------------------------------------TGGAGTGTGACTTAGTCA---------------------------------- | 18 | 13 | 5 | |
| rat | agtgtgtagcagggtgggaaggagctcctgacttcgttacctgtgccgTGGAGTGTGACTTAGTCAggtgactcatattacaacactcaagctgcacaca | |||
| **************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000006527 ENSRNOG00000004806 Strn | |||
| rat | .(((((((((.(((((..((.(((..(((((((..(((((((.........)).)))))..)))))))...)))...))....)))))..))))))))). | 1.000 -41.70 | ||
| rat | chromosome:6:1430708:1430807:-1 | Same_strand|Intronic_coding|ENSRNOT00000006527|ENSRNOG00000004806 ## ENSRNOG00000004806|protein_coding|Strn|Striatin. [Source:UniProtKB/Swiss-Prot;Acc:P70483] |
block1942482 [novel_lenNOK_cloningOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.22/0.26 | 18/19/0.00 | 0.2 | 0.0 | 10 | 0 | 5 | 0 | 29 | -3 | 3arm_loop | 1 | nd | 0.28 | 2 | 10 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------------UUUACUA--------------------------------------- | 8 | novel | ||||
| seed | -----------------------------------------------------UUUUACU---------------------------------------- | 2 | novel | ||||
| len | cloning frequencies | ||||||
| T2S2 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------TTTTACTACTAAGACAAA----------------------------- | 18 | 1 | 2 | 2 | 2 | 1 | |
| ----------------------------------------------------CTTTTACTACTAAGACAAA----------------------------- | 19 | - | - | 1 | 1 | - | |
| rat | ggagaaagaagtgactgataattagcacacttgtctccggactgtaatttttCTTTTACTACTAAGACAAAgctaagatacagtctcaacttagctctcc | ||||||
| **************************************************************************************************** | |||||||
| rat | (((((...(((((((((....(((((....((((((..((...((((........))))..)).)))))).)))))....)))))...))))...))))) | 0.940 -26.90 | |||||
| rat | chromosome:6:71262377:71262476:-1 | intergenic |
block2001878 [novel_lenNOK_cloningOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.53/0.65 | 19/21/0.36 | 0.0 0.0 | 0.7 0.0 | 3 6 | 0 0 | 2 3 | 0 0 | 0 5 | -2 -6 | 5arm_loop 5arm_loop | 1 1 | nd nd | 0.21 0.42 | 2 7 | 11 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------GGGGGUU------------------------------------------------------- | 8 | novel | ||
| seed | -GGGGUGG------------------------------------------------------------ | 3 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T4S2 | |||
| -----TGGGGGTTTGAACCCCTTT-------------------------------------------- | 19 | 6 | - | - | |
| -----TGGGGGTTTGAACCCCTTTCC------------------------------------------ | 21 | - | 1 | 1 | |
| TGGGGTGGGGGTTTGAACCC------------------------------------------------ | 20 | 1 | 1 | - | |
| TGGGGTGGGGGTTTGAACC------------------------------------------------- | 19 | 1 | - | - | |
| rat | tggggTGGGGGTTTGAACCCCTTTcctctaaatctgcatatcataaagttcctacaactcccacgcca | ||||
| ******************************************************************** | |||||
| rat | .((.(((((((((.((((.............................))))....))))))))).)). | 0.940 -19.15 | |||
| rat | chromosome:6:20433914:20433981:1 | intergenic |
block2308416 [novel_lenNOK_cloningOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.56/0.58 | 18/19/0.00 | 0.0 | 0.0 | 10 | 0 | 5 | 0 | 16 | -3 | 3arm_loop | 1 | nd | 0.28 | 2 | 13 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------CUGAGUC-------------------------- | 13 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------ACTGAGTCCCCTCAGTCT---------------- | 18 | 1 | 5 | 3 | 1 | 2 | |
| -----------------------------------------------ACTGAGTCCCCTCAGTCTG--------------- | 19 | - | - | 1 | - | - | |
| rat | atgttctcagccttgtggctgatggggtttctcctccatgcctccctACTGAGTCCCCTCAGTCTgtgggccaaggatata | ||||||
| ********************************************************************************* | |||||||
| rat | (((((((..((((...((((((.((((...(((.................))).))))))))))...))))..))))))). | 0.790 -30.33 | |||||
| rat | chromosome:8:53892143:53892223:-1 | intergenic |
block2983038 [novel_lenNOK_cloningOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.47/0.56 | 18/19/0.00 | 0.6 | 0.5 | 10 | 0 | 6 | 0 | 35 | -1 | 5arm_loop | 1 | nd | 0.22 | 3 | 10 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------CCCUGCC------------------------------------------------------------------- | 6 | novel | |||||
| seed | -------------------------------------UCCCUGC-------------------------------------------------------------------- | 2 | novel | |||||
| seed | ------------------------------------UUCCCUG--------------------------------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------CUGCCCU----------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T4S2 | T5S1 | |||
| -------------------------------------TCCCTGCCCTTTGTACAG--------------------------------------------------------- | 18 | - | 2 | 2 | - | 1 | 1 | |
| ------------------------------------TTCCCTGCCCTTTGTACA---------------------------------------------------------- | 18 | 1 | - | - | - | - | 1 | |
| -----------------------------------ATTCCCTGCCCTTTGTACA---------------------------------------------------------- | 19 | - | 1 | - | - | - | - | |
| ---------------------------------------CCTGCCCTTTGTACAGTG------------------------------------------------------- | 18 | - | - | - | 1 | - | - | |
| rat | ttgtgcagcaaacacttctgagccatttctctaacATTCCCTGCCCTTTGTACAGTGttttaaacacaaggccggtaggatggctcagtggttaaaggtgtgcgttgacaaa | |||||||
| **************************************************************************************************************** | ||||||||
| rat | ((((.((((..(((((((((((((((.............((((((((((((...((.......))))))))..))))))))))))))).......))))))..)))))))). | 0.970 -36.32 | ||||||
| rat | chromosome:X:58767271:58767382:1 | intergenic |
novel_lenNOK_multiarm_Multihit_loopOverlap (28 loci)
block713629 [novel_lenNOK_multiarm_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.400 | no | no | 0.53/0.58 | 19/21/0.33 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 53 37 31 | -17 -1 7 | 5arm_loop_3arm 3arm 3arm | 21 21 21 | nd nd nd | 0.37 0.24 0.42 | 6 2 3 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------GACGUGU------------------------------------------ | 1 | novel | |
| seed | -------------------------------------------------------------GGUUGAU-------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------CACACAA--------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T4S2 | |||
| -----------------------------------------------------CCACACAAGGTTGATGGAC---------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------------AGGTTGATGGACGTGTGGTGG------------------------------------- | 21 | 1 | - | |
| --------------------------------------------------------------------GGACGTGTGGTGGAACCAA------------------------------- | 19 | 1 | - | |
| rat | gttttgtgacctactcttatgtggaagaggtggatgctgcaatgtgtgctcagCCACACAAGGTTGATGGACGTGTGGTGGAACCAAagagctgtttctagagaggattctgtaaagc | |||
| ********************************************************************************************************************** | ||||
| rat | (((((..(((((.((((.....((((.((.(((.(((..((.(((.((.((((((......)))))))).)))))..)))...))).....)).)))).)))))))..))...))))) | 0.780 -29.30 | ||
| rat | chromosome:18:64009422:64009539:-1 | intergenic |
block845402 [novel_lenNOK_multiarm_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.246 | no | no | 0.35/0.44 | 18/25/0.20 | 0.5 0.0 0.0 | 0.3 0.0 0.0 | 11 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 29 35 27 | -12 -23 2 | 5arm_loop_3arm 5arm_loop_3arm 3arm | 40 40 40 | nd nd nd | 0.47 0.44 0.22 | 6 6 2 | 15 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------UGACUAG---------------------------------------------------- | 7 | novel |
| seed | ------------------------------UUGACUA----------------------------------------------------- | 5 | novel |
| seed | ----------------------------------------------UCAUAGG------------------------------------- | 1 | novel |
| seed | ------------------------------------AGCCUUA----------------------------------------------- | 1 | novel |
| seed | -----------------------------UUUGACU------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------TTGACTAGCCTTATGATCA----------------------------------------- | 19 | 6 | |
| -----------------------------TTTGACTAGCCTTATGATC------------------------------------------ | 19 | 3 | |
| -----------------------------TTTGACTAGCCTTATGATCA----------------------------------------- | 20 | 2 | |
| -----------------------------------TAGCCTTATGATCATAGGGAGACAC------------------------------ | 25 | 1 | |
| ---------------------------------------------ATCATAGGGAGACACTAG--------------------------- | 18 | 1 | |
| ----------------------------CTTTGACTAGCCTTATGATC------------------------------------------ | 20 | 1 | |
| ------------------------------TTGACTAGCCTTATGATC------------------------------------------ | 18 | 1 | |
| rat | ggcatgcccaatggtacttctgcttcctcTTTGACTAGCCTTATGATCAtagggagacactaggccattggaagatgaggagagcaatgt | ||
| ****************************************************************************************** | |||
| rat | .((((((((((((((.((..((((((((...(((.((......)).))).)))))).))..))))))))))............))).))) | 0.690 -23.80 |
| rat | chromosome:1:50685162:50685251:-1 | intergenic |
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