other hairpins
novel_lenNOK_multiarm_Multihit_loopOverlap (28 loci)
sblock936 [novel_lenNOK_multiarm_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.293 | no | no | 0.37/0.58 | 19/24/0.33 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 2 2 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 10 40 33 9 | 24 -6 1 21 | 5arm 5arm_loop_3arm 3arm 3arm | 14 14 14 14 | nd nd nd nd | 0.26 0.42 0.35 0.33 | 3 5 5 4 | 6 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------AGGAGAC---------------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | -----------------------------------------GGCAUAU---------------------------------------------------------------- | 2 | novel | |||
| seed | ------------------------------------------------------------GUGAGAC--------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------------------------------AAGGUAC------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T3S2 | T5S1 | T5S2 | |||
| ----------CAGGAGACTGCTCAGAACC----------------------------------------------------------------------------------- | 19 | - | 2 | - | - | |
| ----------------------------------------TGGCATATTATTGGACATC----------------------------------------------------- | 19 | - | - | - | 2 | |
| -----------------------------------------------------------AGTGAGACTCTGACAGAAGA--------------------------------- | 20 | - | - | 1 | - | |
| -------------------------------------------------------------------------------AAAGGTACCGGATACATTCTCCTG--------- | 24 | 1 | - | - | - | |
| rat | caggtagacaCAGGAGACTGCTCAGAACCtagtttcaatcTGGCATATTATTGGACATCAGTGAGACTCTGACAGAAGAAAAGGTACCGGATACATTCTCCTGacaacgtga | |||||
| **************************************************************************************************************** | ||||||
| rat | ((.((.....(((((((.((.((...((((..((((..((((.((..((((((.....)))))).....)).)))).))))))))....))..)).)))))))...)).)). | 0.500 -25.10 | ||||
| rat | chromosome:1:203025030:203025141:-1 | intergenic |
sblock938 [novel_lenNOK_multiarm_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.095 | no | no | 0.37/0.58 | 19/24/0.33 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 2 2 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 1 31 24 0 | 24 -6 1 21 | 5arm 5arm_loop_3arm 3arm 3arm | 14 14 14 14 | nd nd nd nd | 0.26 0.42 0.35 0.30 | 3 5 5 4 | 6 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------------------GGCAUAU------------------------------------------------------- | 2 | novel | |||
| seed | --AGGAGAC------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | -----------------------------------------------------------------------AAGGUAC---------------- | 1 | novel | |||
| seed | ---------------------------------------------------GUGAGAC------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T3S2 | T5S1 | T5S2 | |||
| -------------------------------TGGCATATTATTGGACATC-------------------------------------------- | 19 | - | - | - | 2 | |
| -CAGGAGACTGCTCAGAACC-------------------------------------------------------------------------- | 19 | - | 2 | - | - | |
| --------------------------------------------------AGTGAGACTCTGACAGAAGA------------------------ | 20 | - | - | 1 | - | |
| ----------------------------------------------------------------------AAAGGTACCGGATACATTCTCCTG | 24 | 1 | - | - | - | |
| rat | aCAGGAGACTGCTCAGAACCtagtttcaatcTGGCATATTATTGGACATCAGTGAGACTCTGACAGAAGAAAAGGTACCGGATACATTCTCCTG | |||||
| ********************************************************************************************** | ||||||
| rat | .(((((((.((.((...((((..((((..((((.((..((((((.....)))))).....)).)))).))))))))....))..)).))))))) | 0.560 -23.20 | ||||
| rat | chromosome:1:203028894:203028987:-1 | intergenic |
block791899 [novel_lenNOK_multiarm_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.434 | no | no | 0.72/0.79 | 18/19/0.00 | 0.5 0.0 | 1.0 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 24 31 | 1 -5 | 5arm 5arm_loop_3arm | 24 24 | nd nd | 0.16 0.37 | 2 4 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------GAGACAG--------------------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------AGACAGC-------------------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------CGCCGGG-------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| ------------------------AGAGACAGCGCCGGGGCA----------------------------------------------------------------------- | 18 | - | 1 | |
| -------------------------GAGACAGCGCCGGGGCAAG--------------------------------------------------------------------- | 19 | 1 | - | |
| -------------------------------GCGCCGGGGCAAGCGAGAG--------------------------------------------------------------- | 19 | - | 1 | |
| rat | ccattgcagtacattgagctccatAGAGACAGCGCCGGGGCAAGCGAGAGccggacgggcactgggcgactctgtgcctcgtggaggaaaatcaactaaacatgggcaaagga | |||
| ***************************************************************************************************************** | ||||
| ..........................................................................................................>>>>>>>>>>>>>>>>> | ENSRNOT00000057873 ENSRNOG00000038033 | |||
| rat | ((.((((.((...((((.((((((.(((((((((((.((((..((....)).......)).)).))))...))))..))))))))).....))))....))....)))).)). | 0.450 -34.00 | ||
| rat | chromosome:19:56979642:56979754:-1 | intergenic |
sblock1130 [novel_lenNOK_multiarm_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.310 | no | no | 0.44/0.53 | 18/20/0.20 | 0.7 0.0 | 1.3 0.0 | 3 2 | 0 0 | 3 2 | 0 0 | 0 35 | 43 -2 | 5arm 3arm_loop | 18 18 | nd nd | 0.44 0.26 | 8 3 | 5 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -CCUUCUU--------------------------------------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | ------------------------------------------------------------------GGCAAGC---------------------------------------------- | 2 | novel | ||||
| seed | ---UUCUUAA------------------------------------------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------AGGCAAGCTCCAAAGTTGC----------------------------------- | 19 | - | - | 1 | 1 | - | |
| --CTTCTTAAATGGTCCTGC--------------------------------------------------------------------------------------------------- | 18 | - | 1 | - | - | - | |
| GCCTTCTTAAATGGTCCT----------------------------------------------------------------------------------------------------- | 18 | 1 | - | - | - | - | |
| GCCTTCTTAAATGGTCCTGC--------------------------------------------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| rat | GCCTTCTTAAATGGTCCTGCctgctgtgctctgtgtcccgcggttggattctgtgaggcatgctcAGGCAAGCTCCAAAGTTGCgacatggtgagcacattgtcagggcacacaaaggg | ||||||
| *********************************************************************************************************************** | |||||||
| rat | .((((........((((((.....(((((((.(((((..(((.(((((.........((.(((....))).)))))))...))))))))...)))))))....)))))).....)))). | 0.840 -37.92 | |||||
| rat | chromosome:1:385584:385702:1 | intergenic |
sblock6123 [novel_lenNOK_multiarm_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.784 | no | no | 0.72/0.79 | 18/19/0.00 | 0.5 0.0 0.0 | 1.0 0.0 0.0 | 2 1 1 | 0 0 0 | 2 1 1 | 0 0 0 | 7 14 22 | 1 -5 -4 | 5arm 5arm_loop_3arm 3arm_loop | 24 24 25 | nd nd nd | 0.16 0.37 0.63 | 2 4 7 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------CGCCGGG----------------------------------------------- | 1 | novel | |
| seed | ---------AGACAGC----------------------------------------------------- | 1 | novel | |
| seed | -----------------------------AGAGCCG--------------------------------- | 1 | novel | |
| seed | --------GAGACAG------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| -------AGAGACAGCGCCGGGGCA-------------------------------------------- | 18 | - | 1 | |
| --------------GCGCCGGGGCAAGCGAGAG------------------------------------ | 19 | - | 1 | |
| --------GAGACAGCGCCGGGGCAAG------------------------------------------ | 19 | 1 | - | |
| ----------------------------GAGAGCCGGACGGGCACTG---------------------- | 19 | 1 | - | |
| rat | gctccatAGAGACAGCGCCGGGGCAAGCGAGAGCCGGACGGGCACTGggcgactctgtgcctcgcggag | |||
| ********************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016621 ENSRNOG00000012427 Veph1 | |||
| rat | .((((...(((((((((((.((((..((....)).......)).)).))))...))))..)))..)))) | 0.590 -24.50 | ||
| rat | chromosome:2:155903901:155903969:-1 | Same_strand|Intronic_coding|ENSRNOT00000016621|ENSRNOG00000012427 ## ENSRNOG00000012427|protein_coding|Veph1|Ventricular zone-expressed PH domain-containing protein homolog 1 (Protein melted homolog). [Source:UniProtKB/Swiss-Prot;Acc:Q5PQS3] |
sblock7907 [novel_lenNOK_multiarm_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.465 | no | no | 0.72/0.79 | 18/19/0.00 | 0.5 0.0 0.0 | 1.0 0.0 0.0 | 2 1 1 | 0 0 0 | 2 1 1 | 0 0 0 | 15 22 30 | 1 -5 -4 | 5arm 5arm_loop_3arm 3arm_loop | 24 24 25 | nd nd nd | 0.21 0.37 0.63 | 2 4 7 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------AGACAGC------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------AGAGCCG----------------------------------------- | 1 | novel | |
| seed | ----------------GAGACAG-------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------CGCCGGG------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| ---------------AGAGACAGCGCCGGGGCA---------------------------------------------------- | 18 | - | 1 | |
| ----------------GAGACAGCGCCGGGGCAAG-------------------------------------------------- | 19 | 1 | - | |
| ------------------------------------GAGAGCCGGACGGGCACTG------------------------------ | 19 | 1 | - | |
| ----------------------GCGCCGGGGCAAGCGAGAG-------------------------------------------- | 19 | - | 1 | |
| rat | gactgttatttcgatAGAGACAGCGCCGGGGCAAGCGAGAGCCGGACGGGCACTGggcgactctgtgtctcgcggaggaaaatca | |||
| ************************************************************************************* | ||||
| rat | ((...((.(((((..(((.((((((((.((((..((....)).......)).)).))))...)))).)))..))))).))..)). | 0.900 -26.50 | ||
| rat | chromosome:3:61138257:61138341:1 | intergenic |
novel_5varHIGH_loopOverlap_nonpairedHIGH (27 loci)
block15952 [novel_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.854 | no | no | 0.33/0.36 | 21/22/1.00 | 1.5 | 2.0 | 2 | 0 | 1 | 0 | 15 | -2 | 3arm | 3 | nd | 0.36 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------GAUUAAU----------------------------- | 1 | novel |
| seed | -----------------------------------------------UGUGAUU-------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------------------------TTGTGATTAATCGTGAATGAG------------------- | 21 | 1 | |
| -------------------------------------------------TGATTAATCGTGAATGAGTCTG--------------- | 22 | 1 | |
| rat | cgaggacatgtggggagcacctccagagttaccttttgaaaacttaTTGTGATTAATCGTGAATGAGTCTGctgacatctgttgtt | ||
| ************************************************************************************** | |||
| rat | .((.((((.(((...((((.(((.....((((...((((..((.....))..))))..))))..)))..))))..))).)))).)) | 0.440 -15.40 |
| rat | chromosome:10:36706360:36706445:-1 | intergenic |
block75191 [novel_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.094 | no | no | 0.40/0.52 | 18/24/0.83 | 3.0 1.5 | 3.5 2.0 | 2 4 | 0 0 | 2 3 | 0 0 | 8 25 | -2 -13 | 5arm_loop 5arm_loop | 5 6 | nd nd | 0.39 0.67 | 3 12 | 6 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------------CAACAUC--------------------------------------------------------- | 2 | novel | |||
| seed | ----------------------------ACAUCCA------------------------------------------------------- | 1 | novel | |||
| seed | ---------CGCACCC-------------------------------------------------------------------------- | 1 | novel | |||
| seed | ------------------------------AUCCAGA----------------------------------------------------- | 1 | novel | |||
| seed | ---------------CUCUCUG-------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T2S2 | |||
| --------CCGCACCCTCTCTGATTACAACA----------------------------------------------------------- | 23 | - | 1 | - | - | |
| --------------CCTCTCTGATTACAACATCCAGAA---------------------------------------------------- | 24 | - | - | 1 | - | |
| ---------------------------AACATCCAGAAAGAGTCAAC------------------------------------------- | 20 | - | - | - | 1 | |
| -----------------------------CATCCAGAAAGAGTCAAC------------------------------------------- | 18 | 1 | - | - | - | |
| -------------------------ACAACATCCAGAAAGAGTCAACCC----------------------------------------- | 24 | - | 1 | - | - | |
| -------------------------ACAACATCCAGAAAGAGTCA--------------------------------------------- | 20 | 1 | - | - | - | |
| rat | gaagatggCCGCACCCTCTCTGATTACAACATCCAGAAAGAGTCAACCCtgcaccttgtcctccgcctgaggggcggcatgcagatcttc | |||||
| ****************************************************************************************** | ||||||
| rat | ((((((.(((((.(((((...((..((((....(((............)))....))))..)).....))))))))))......)))))) | 0.440 -26.50 | ||||
| rat | chromosome:10:48738913:48739002:1 | intergenic ## {Repeats: trf 486 527 0 class=trf} |
block234795 [novel_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.219 | no | no | 0.53/0.56 | 18/20/0.78 | 1.1 | 1.1 | 7 | 0 | 1 | 0 | 8 | -1 | 3arm_loop | 1 | nd | 0.40 | 3 | 9 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------GACUCCA------------------------ | 7 | novel |
| seed | ---------------------------------------------CCACCAU-------------------- | 2 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------------------TGACTCCACCATGGTCTCTG------------ | 20 | 5 | |
| --------------------------------------------TCCACCATGGTCTCTGCAGA-------- | 20 | 2 | |
| ----------------------------------------TGACTCCACCATGGTCTCT------------- | 19 | 1 | |
| ----------------------------------------TGACTCCACCATGGTCTC-------------- | 18 | 1 | |
| rat | attggttcacaaagctacacttgggtggaatccccacagaTGACTCCACCATGGTCTCTGCAGAagccagtc | ||
| ************************************************************************ | |||
| rat | (((((((.....((..((.....((((((.((.........)).))))))...))..)).....))))))). | 0.730 -17.30 |
| rat | chromosome:12:44301903:44301974:1 | intergenic |
block541847 [novel_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.338 | no | no | 0.58/0.62 | 19/21/0.75 | 1.2 | 0.8 | 4 | 0 | 1 | 0 | 34 | -6 | 3arm | 1 | nd | 0.37 | 3 | 4 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------UGACCUG-------------------------------------------------- | 3 | novel |
| seed | ------------------------------------------------UGGUCCC--------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| ------------------------------------------GTGACCTGGTCCCTGTTCTCC------------------------------------- | 21 | 3 | |
| -----------------------------------------------CTGGTCCCTGTTCTCCACA---------------------------------- | 19 | 1 | |
| rat | gctttggatgcgggatgtaaaacgcttggctgctggggccatGTGACCTGGTCCCTGTTCTCCACAttcaatgtttacttcacttcccacacaatgagtt | ||
| **************************************************************************************************** | |||
| rat | ((((....((.((((.(((((.....(((..((.(((((((.......))))))).))...))).........)))))......)))).))....)))). | 0.600 -25.74 |
| rat | chromosome:16:59263444:59263543:-1 | intergenic |
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