other hairpins
novel_5varHIGH_loopOverlap_nonpairedHIGH (27 loci)
block601494 [novel_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.050 | no | no | 0.25/0.39 | 19/24/0.83 | 5.2 | 4.2 | 6 | 0 | 2 | 0 | 27 | -18 | 3arm_loop | 1 | nd | 0.43 | 3 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------GGGCUCA------------------------------------------------------ | 2 | novel | |
| seed | -----------------------------------------------------CACUAAU------------------------------------------------- | 2 | novel | |
| seed | ---------------------------------------------------------AAUUGUA--------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------UGUAUCU------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------------------------------TGGGCTCACTAATTGTATCTTGA--------------------------------------- | 23 | 1 | 1 | |
| ----------------------------------------------------TCACTAATTGTATCTTGAT-------------------------------------- | 19 | - | 1 | |
| ----------------------------------------------------TCACTAATTGTATCTTGATACTCA--------------------------------- | 24 | - | 1 | |
| -----------------------------------------------------------TTGTATCTTGATACTCATGGAGG--------------------------- | 23 | - | 1 | |
| --------------------------------------------------------TAATTGTATCTTGATACTCA--------------------------------- | 20 | - | 1 | |
| rat | gactgacgtggaggtgtgggtgggaagacctcagggaaggttgagaaTGGGCTCACTAATTGTATCTTGATACTCATGGAGGaaaattttacctttgtctattttagtc | |||
| ************************************************************************************************************* | ||||
| rat | ((((((.(((((.....((((((((...((((...((..((..(((....((.........)).)))..))..))...))))....))))))))...))))).)))))) | 0.950 -29.80 | ||
| rat | chromosome:17:17549979:17550087:-1 | intergenic |
block602254 [novel_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.105 | no | no | 0.45/0.48 | 21/22/1.00 | 2.2 | 2.0 | 4 | 0 | 1 | 0 | 20 | -4 | 3arm | 1 | nd | 0.41 | 3 | 4 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------ACAUUCC-------------------------------------- | 2 | novel |
| seed | -------------------------------------------------CCUGGAU--------------------------------- | 1 | novel |
| seed | ------------------------------------------------UCCUGGA---------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------------TACATTCCTGGATGAGTAGCCA------------------------ | 22 | 2 | |
| ------------------------------------------------TCCTGGATGAGTAGCCATTCA-------------------- | 21 | 1 | |
| -----------------------------------------------TTCCTGGATGAGTAGCCATTCA-------------------- | 22 | 1 | |
| rat | cctcggagggaagcgtgggcgtatttcactcagggaccttaaaTACATTCCTGGATGAGTAGCCATTCAtaagcatgcttggccaagga | ||
| ***************************************************************************************** | |||
| rat | (((.((....((((((((((....((((..((((((...........))))))..))))..))).........)))))))..)).))). | 0.980 -27.20 |
| rat | chromosome:17:18978255:18978343:-1 | intergenic |
block881150 [novel_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.627 | no | no | 0.33/0.41 | 18/24/0.88 | 1.1 | 2.2 | 8 | 0 | 2 | 0 | 25 | -23 | 3arm_loop | 2 | nd | 0.33 | 3 | 8 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------GAGAGCA----------------------------------------- | 6 | novel | |
| seed | ----------------------------------------------------------GAGCACU--------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------GAGUACU------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -------------------------------------------------------TGAGAGCACTAAATGAATTGGGAA------------------------- | 24 | 3 | - | |
| -------------------------------------------------------TGAGAGCACTAAATGAATTGGG--------------------------- | 22 | 1 | - | |
| ---------------------------------------------------------AGAGCACTAAATGAATTGGGAA------------------------- | 22 | 1 | - | |
| -------------------------------------------------------TGAGAGCACTAAATGAATTGG---------------------------- | 21 | - | 1 | |
| ------------------------------------------------TGAGTACTGAGAGCACTAAATGAA-------------------------------- | 24 | 1 | - | |
| -------------------------------------------------------TGAGAGCACTAAATGAAT------------------------------- | 18 | 1 | - | |
| rat | cacagcttagatactgcaaggttgggtggacagagattttatggtgacTGAGTACTGAGAGCACTAAATGAATTGGGAAtgactgagcagtggtttgcgctttg | |||
| ******************************************************************************************************** | ||||
| rat | ((.(((.((((((((((..(((((..........(((((..(((((.((..........)))))))...))))).....)))))..)))))).)))).))).)) | 0.500 -20.66 | ||
| rat | chromosome:1:129004727:129004830:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_loopOverlap (27 loci)
sblock10589 [novel_cloningOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.059 | no | no | 0.59/0.67 | 19/22/0.93 | 0.6 0.0 | 0.9 0.0 | 12 2 | 0 0 | 5 2 | 0 0 | 16 16 | -4 10 | 5arm_loop 3arm | 1 1 | 34 0 | 0.11 0.43 | 2 8 | 14 | 6 | 0 | -23 |
| reads | miRBase family seed | |||||||
| seed | -------------------UGGGGUG---------------------------------------------------------------- | 6 | novel | |||||
| seed | ------------------UUGGGGU----------------------------------------------------------------- | 4 | novel | |||||
| seed | ------------------------------------------------------CUGUCUC----------------------------- | 2 | novel | |||||
| seed | --------------------GGGGUGG--------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------CUUGGGG------------------------------------------------------------------ | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T3S1 | T3S2 | T4S2 | T5S2 | |||
| ------------------TTGGGGTGGACAGCCTGACTC--------------------------------------------------- | 21 | - | 2 | - | 1 | - | 1 | |
| -----------------------------------------------------CCTGTCTCCTCCACCCCACAG---------------- | 21 | 1 | 1 | - | - | - | - | |
| -----------------CTTGGGGTGGACAGCCTGACTC--------------------------------------------------- | 22 | - | 1 | 1 | - | - | - | |
| -----------------CTTGGGGTGGACAGCCTGAC----------------------------------------------------- | 20 | - | 1 | - | 1 | - | - | |
| -------------------TGGGGTGGACAGCCTGACTCA-------------------------------------------------- | 21 | - | - | - | - | 1 | - | |
| ------------------TTGGGGTGGACAGCCTGACTCA-------------------------------------------------- | 22 | - | - | - | 1 | - | - | |
| ----------------TCTTGGGGTGGACAGCCTGA------------------------------------------------------ | 20 | - | 1 | - | - | - | - | |
| ------------------TTGGGGTGGACAGCCTGAC----------------------------------------------------- | 19 | - | - | - | 1 | - | - | |
| rat | attctttgagtctcctTCTTGGGGTGGACAGCCTGACTCAtgattgggctgagCCTGTCTCCTCCACCCCACAGgcctgtgttctgagga | |||||||
| ****************************************************************************************** | ||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000008303 ENSRNOG00000006217 NP_001101534.1 | |||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000044179 ENSRNOG00000006217 NP_001101534.1 | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000008314 ENSRNOG00000006217 NP_001101534.1 | |||||||
| rat | .(((((.(((...(((...(((((((((((((((((.......))))))))...........))))))))).)))......))).))))) | 0.750 -29.30 | ||||||
| rat | chromosome:7:12933068:12933157:-1 | Same_strand|Intronic_coding|ENSRNOT00000008314|ENSRNOG00000006217 ## ENSRNOG00000006217|protein_coding|NP_001101534.1|widely-interspaced zinc finger motifs [Source:RefSeq_peptide;Acc:NP_001101534] |
sblock10904 [novel_cloningOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.023 | no | no | 0.32/0.53 | 19/22/0.95 | 0.0 0.0 0.0 1.5 | 0.0 0.0 0.0 2.5 | 2 1 13 2 | 0 0 0 0 | 2 1 2 1 | 0 0 0 0 | 8 15 24 14 | 2 -3 -12 -3 | 5arm 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.23 0.25 0.40 0.19 | 2 4 4 3 | 20 | 4 | 0 | -3 |
| reads | miRBase family seed | |||||
| seed | -------------------------ACUCUUG--------------------------------------- | 14 | novel | |||
| seed | ---------AACUCAU------------------------------------------------------- | 2 | novel | |||
| seed | ----------------GGUUUUU------------------------------------------------ | 1 | novel | |||
| seed | -------------------------------------AGGAUGA--------------------------- | 1 | novel | |||
| seed | ----------------------UCUACUC------------------------------------------ | 1 | novel | |||
| seed | ----------------------------------GCCAGGA------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T5S1 | T5S2 | |||
| ------------------------TACTCTTGTTGCCAGGATGA--------------------------- | 20 | 1 | - | 13 | - | |
| --------TAACTCATGGTTTTTCTACTCT----------------------------------------- | 22 | - | 1 | - | 1 | |
| ---------------TGGTTTTTCTACTCTTGTTG------------------------------------ | 20 | - | - | 1 | - | |
| ---------------------TTCTACTCTTGTTGCCAGGA------------------------------ | 20 | - | - | 1 | - | |
| ---------------------------------TGCCAGGATGATGGAAAGG------------------- | 19 | - | - | 1 | - | |
| ------------------------------------CAGGATGATGGAAAGGCTGAG-------------- | 21 | - | - | 1 | - | |
| rat | cagagttttaactcatggtttttcTACTCTTGTTGCCAGGATGAtggaaaggctgaggaaaagtgattctg | |||||
| *********************************************************************** | ||||||
| rat | (((((((....(((..((((((((((.(((((....)))))...))))))))))))).......))))))) | 1.000 -19.60 | ||||
| rat | chromosome:7:96051328:96051398:-1 | intergenic |
sblock11617 [novel_cloningOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.088 | no | no | 0.35/0.50 | 20/24/1.00 | 0.0 0.0 0.0 | 0.7 0.5 0.0 | 3 4 4 | 0 0 0 | 3 1 1 | 0 0 0 | 20 39 10 | 8 -12 15 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.55 0.45 0.20 | 5 5 2 | 12 | 3 | 0 | 10 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------CCUUGGG----------------------------------------------------- | 4 | novel | ||
| seed | -----------------------------------------------------------------------GCCUGUC---------------------- | 4 | novel | ||
| seed | ---------------------AACAGCA------------------------------------------------------------------------ | 3 | miR-21* | ||
| seed | -------------------------------------------------------------------GACUGCC-------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S1 | T5S1 | |||
| ----------------------------------------------------------------------TGCCTGTCCAATACTCCTCA---------- | 20 | - | - | 4 | |
| ---------------------------------------CCCTTGGGCGATTTTTTTTCCC--------------------------------------- | 22 | - | - | 2 | |
| ---------------------------------------CCCTTGGGCGATTTTTTTTCCCA-------------------------------------- | 23 | - | - | 2 | |
| --------------------TAACAGCAGGACATTTTTTC------------------------------------------------------------ | 20 | - | 1 | 1 | |
| --------------------TAACAGCAGGACATTTTTTCCC---------------------------------------------------------- | 22 | 1 | - | - | |
| ------------------------------------------------------------------TGACTGCCTGTCCAATACTCCTCA---------- | 24 | - | - | 1 | |
| rat | gagagctaacggggaagtgttaacagcaggacattttttCCCTTGGGCGATTTTTTTTCCCAtccatgacTGCCTGTCCAATACTCCTCAtttgactttt | ||||
| **************************************************************************************************** | |||||
| rat | (((((.(((.((((.((((((....(((((.((.((.......((((.((.....)).)))).....)).)))))))..))))))))))..))).))))) | 0.930 -23.30 | |||
| rat | chromosome:8:57713830:57713929:-1 | intergenic ## {Repeats: dust 57713872 57713879 0 class=dust} |
sblock11629 [novel_cloningOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.286 | no | no | 0.35/0.54 | 19/25/0.91 | 1.5 0.0 0.5 0.0 | 3.5 0.0 0.5 0.0 | 2 10 2 4 | 0 0 0 0 | 2 4 1 1 | 0 0 0 0 | 1 48 38 29 | 27 -14 -8 1 | 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.26 0.60 0.45 0.29 | 3 9 6 3 | 23 | 5 | -21 | -20 |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------------GGCAGUU------------------------------------------------------------- | 11 | novel | ||||
| seed | -----------------------------------------------------------------CCUACGG--------------------------------------------- | 4 | novel | ||||
| seed | --------------------------------------------------------------------ACGGUGG------------------------------------------ | 1 | novel | ||||
| seed | ---------------------------------------------CUUUGGC----------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------UUGGCAG--------------------------------------------------------------- | 1 | novel | ||||
| seed | ---------------------------------------------------------CAGUUUC----------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------CCUUUGG------------------------------------------------------------------ | 1 | novel | ||||
| seed | --GCCAAAU------------------------------------------------------------------------------------------------------------ | 1 | novel | ||||
| seed | --------------------------------------------------------UCAGUUU------------------------------------------------------ | 1 | novel | ||||
| seed | -----AAAUCCU--------------------------------------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T2S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------TGGCAGTTTCAGTTTCTCCT------------------------------------------------- | 20 | - | - | - | 10 | 1 | |
| ----------------------------------------------------------------TCCTACGGTGGTCAATACCAGCTC----------------------------- | 24 | - | - | - | 4 | - | |
| --------------------------------------------------------TCAGTTTCTCCTACGGTGGTCA--------------------------------------- | 22 | - | - | - | 1 | - | |
| ----CAAATCCTTAAGTTCTTAGGAAG------------------------------------------------------------------------------------------ | 23 | - | - | - | 1 | - | |
| -------------------------------------------------------TTCAGTTTCTCCTACGGTGGTCAA-------------------------------------- | 24 | - | - | - | 1 | - | |
| -------------------------------------------TCCTTTGGCAGTTTCAGTTTCTCCT------------------------------------------------- | 25 | - | 1 | - | - | - | |
| -GGCCAAATCCTTAAGTTCT------------------------------------------------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| ----------------------------------------------TTTGGCAGTTTCAGTTTCTC--------------------------------------------------- | 20 | - | - | - | 1 | - | |
| --------------------------------------------CCTTTGGCAGTTTCAGTTTCTC--------------------------------------------------- | 22 | 1 | - | - | - | - | |
| -------------------------------------------------------------------TACGGTGGTCAATACCAGCTCTC--------------------------- | 23 | - | - | - | 1 | - | |
| rat | aggccaaatccttaagttcttaggaagctttgttcacgcaccctccttTGGCAGTTTCAGTTTCTCCTACGGTGGTCAATACCAGCTCtccagtaactgaggttaggggcctggctt | ||||||
| ********************************************************************************************************************* | |||||||
| rat | ((((((..(((((((.(((...(((((((.((((.((.((((.......((.((.........))))...)))))).))))..)))).))).......))).)))))))..)))))) | 0.810 -30.80 | |||||
| rat | chromosome:8:57718918:57719034:-1 | intergenic |
sblock1284 [novel_cloningOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.414 | no | no | 0.35/0.53 | 19/25/0.82 | 4.0 1.0 0.0 0.0 | 1.3 1.2 0.0 0.0 | 3 4 23 1 | 0 0 0 0 | 2 2 6 1 | 0 0 0 0 | 13 30 46 28 | 20 4 -9 6 | 5arm 5arm 5arm_loop_3arm 3arm | 4 4 4 4 | nd nd nd nd | 0.26 0.30 0.57 0.16 | 4 4 5 2 | 40 | 7 | 1 | 0 |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------------------GACAAAA------------------------------------------------------------- | 31 | novel | ||||||
| seed | --------------------------------CCUCAGC---------------------------------------------------------------------------- | 2 | novel | ||||||
| seed | --------------------CACAACC---------------------------------------------------------------------------------------- | 2 | novel | ||||||
| seed | -------------------------------UCCUCAG----------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------AUGACAA--------------------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------------------------AAGUCCA--------------------------------------- | 1 | novel | ||||||
| seed | --------------ACCACUC---------------------------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------CAGCUCU------------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------TGACAAAATGTAACCCTACTC------------------------------------------------ | 21 | - | 1 | 1 | 1 | - | 23 | - | |
| ----------------------------------------------TGACAAAATGTAACCCTACT------------------------------------------------- | 20 | 1 | - | - | - | - | 2 | - | |
| -------------------TCACAACCTGTCTCCTCAG----------------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | 1 | |
| ----------------------------------------------TGACAAAATGTAACCCTAC-------------------------------------------------- | 19 | - | - | - | - | - | 2 | - | |
| -------------------------------TCCTCAGCTCTTGTATGACAAAA------------------------------------------------------------- | 23 | - | - | - | - | - | 2 | - | |
| -------------TACCACTCACAACCTGTCTCCTC------------------------------------------------------------------------------- | 23 | - | - | - | - | - | - | 1 | |
| ----------------------------------TCAGCTCTTGTATGACAAA-------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | |
| ------------------------------CTCCTCAGCTCTTGTATGAC----------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------TAAGTCCATATGTTGGGGG---------------------------- | 19 | - | - | - | - | - | 1 | - | |
| --------------------------------------------TATGACAAAATGTAACCCTACTCCT---------------------------------------------- | 25 | - | - | - | - | 1 | - | - | |
| rat | tgggccggataaataccactcacaacctgtctcctcagctcttgtaTGACAAAATGTAACCCTACTCctaagtccatatgttgggggggttgtttttttttgttttgttttgttt | ||||||||
| ******************************************************************************************************************* | |||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | ||||||||
| rat | .((((..((((((........(((((((....(((((((....(((((((.....(((....)))......))).))))))))))))))))))..........))))))..)))) | 0.960 -22.97 | |||||||
| rat | chromosome:1:47838719:47838833:1 | Same_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
sblock1878 [novel_cloningOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.345 | no | no | 0.45/0.57 | 18/21/0.80 | 0.0 0.0 1.0 0.0 0.0 | 0.0 0.0 0.0 0.5 0.0 | 1 1 2 4 2 | 0 0 0 0 0 | 1 1 2 1 1 | 0 0 0 0 0 | 37 48 36 30 18 | 1 -9 -3 4 16 | 5arm 5arm_loop_3arm 3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.29 0.50 0.26 0.22 0.30 | 3 7 2 2 4 | 10 | 2 | 3 | 0 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------AGGUUUG------------------------------------------ | 4 | novel | |
| seed | -----------------------------------------------------------------------------------GCAAGCA------------------------------ | 2 | novel | |
| seed | -------------------------------------------------AAACGGG---------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------CAACUAG----------------------------------------------- | 1 | novel | |
| seed | --------------------------------------CUGUGCA--------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------CUCAACU------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| ----------------------------------------------------------------------TAGGTTTGTGGGTGCAAGCA------------------------------ | 20 | - | 3 | |
| ----------------------------------------------------------------------------------TGCAAGCATGGGTTTCATAG------------------ | 20 | - | 2 | |
| ------------------------------------------------CAAACGGGCTGTTACACTCA---------------------------------------------------- | 20 | - | 1 | |
| -------------------------------------TCTGTGCACGACAAACGGGCT-------------------------------------------------------------- | 21 | - | 1 | |
| ----------------------------------------------------------------------TAGGTTTGTGGGTGCAAG-------------------------------- | 18 | - | 1 | |
| ---------------------------------------------------------------ACTCAACTAGGTTTGTGGGTG------------------------------------ | 21 | 1 | - | |
| -----------------------------------------------------------------TCAACTAGGTTTGTGGGTG------------------------------------ | 19 | - | 1 | |
| rat | tttggcttcatgctcaattgaaactaacatttgctgcTCTGTGCACGACAAACGGGCTGTTACACTCAACTAGGTTTGTGGGTGCAAGCATGGGTTTCATAGcgcatttgaaagaaaaaa | |||
| ************************************************************************************************************************ | ||||
| rat | (((..((((((((.....(((((((......((((......(((((.((((((.((.((.......)).))..))))))..)))))))))..)))))))....)))..))).))..))). | 0.730 -26.00 | ||
| rat | chromosome:1:124860687:124860806:1 | intergenic |
sblock2346 [novel_cloningOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.022 | no | no | 0.47/0.57 | 19/21/0.75 | 0.0 0.0 0.0 0.0 0.0 | 0.5 0.5 0.0 0.0 0.0 | 4 2 4 1 1 | 0 0 0 0 0 | 2 1 3 1 1 | 0 0 0 0 0 | 10 24 36 23 13 | 14 -1 5 19 27 | 5arm 5arm_loop 3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.20 0.25 0.45 0.26 0.48 | 2 2 8 4 4 | 12 | 3 | 5 | -3 |
| reads | miRBase family seed | ||||
| seed | -----------ACAACCC------------------------------------------------------------------------------------------------ | 4 | novel | ||
| seed | -----------------------------------------------------------GACACCC------------------------------------------------ | 4 | novel | ||
| seed | -------------------------UAAGGAG---------------------------------------------------------------------------------- | 2 | novel | ||
| seed | -------------------------------------------------------------------------AUCCUAA---------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------------------GCCAAAC-------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ----------------------------------------------------------TGACACCCACCAACGATCCT------------------------------------ | 20 | 1 | 2 | 1 | |
| ----------TACAACCCTGGGCATTAAGG------------------------------------------------------------------------------------ | 20 | 1 | - | 1 | |
| ----------TACAACCCTGGGCATTAAG------------------------------------------------------------------------------------- | 19 | 1 | - | 1 | |
| ------------------------TTAAGGAGGGGTGTGACCAGA--------------------------------------------------------------------- | 21 | - | - | 1 | |
| ------------------------TTAAGGAGGGGTGTGACCAG---------------------------------------------------------------------- | 20 | - | - | 1 | |
| --------------------------------------------------------------------------------TGCCAAACCAGGTCTGCCAGA------------- | 21 | - | - | 1 | |
| ------------------------------------------------------------------------GATCCTAATGCCAAACCAG----------------------- | 19 | - | - | 1 | |
| rat | ggctttgcctTACAACCCTGGGCATTAAGGAGGGGTGTGACCAGAgcttccacctggaTGACACCCACCAACGATCCTAATGCCAAACCAGGTCTGCCAGAcattcgcttgcct | ||||
| ****************************************************************************************************************** | |||||
| rat | (((...((((..((..((((((((((.((((.((((((..((((.........))))...))))))........))))))))))....))))..))..))......))..))). | 0.640 -36.40 | |||
| rat | chromosome:10:36521208:36521321:-1 | intergenic |
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