miR-Intess: classification

other hairpins

novel_cloningOK_multiarm_DicerNOK_loopOverlap (27 loci)

novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH (27 loci)

block93198 [novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.335	no	no	0.72/0.75	18/20/0.23	0.0	0.0	13	0	5	0	21	-1	3arm_loop	1	nd	0.28	4	22	5	na	na

		reads	miRBase family seed
seed	--------------------------------------------GGGGUGG-------------------------------	22	novel
		len	cloning frequencies
			T1S1	T2S1	T2S2	T3S1	T4S1
	-------------------------------------------TGGGGTGGGTTGGGGGGT---------------------	18	3	10	-	2	1
	-------------------------------------------TGGGGTGGGTTGGGGGGTGG-------------------	20	2	2	1	-	-
	-------------------------------------------TGGGGTGGGTTGGGGGGTG--------------------	19	-	1	-	-	-
rat	gcccagcctcaatactgtgttttctgcaatgacctctttatgcTGGGGTGGGTTGGGGGGTggagatcagtactgatgtggc
	**********************************************************************************
rat	(((..((.(((.(((((...(((((((..((((((((((.....)))).))))))....))))))).))))).))).)))))	0.990 -24.70

rat

chromosome:10:86182994:86183075:1

intergenic

block170096 [novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.018	no	no	0.22/0.26	18/19/0.00	0.2	0.0	10	0	4	0	21	-3	3arm_loop	1	nd	0.28	4	12	4	na	na

		reads	miRBase family seed
seed	--------------------------------------------CCAAAUA-------------------------------	10	novel
seed	-------------------------------------------UCCAAAU--------------------------------	2	novel
		len	cloning frequencies
			T1S1	T2S1	T4S1	T5S2
	-------------------------------------------TCCAAATAAAAGTAAAGT---------------------	18	2	6	1	1
	------------------------------------------CTCCAAATAAAAGTAAAGT---------------------	19	-	2	-	-
rat	ttgttcttccacagtctggaaaatcgctttacatcatttgtgCTCCAAATAAAAGTAAAGTgctttaaggctggaggcataa
	**********************************************************************************
rat	.(((.(((((..(((((...(((.((((((((...(((((.....)))))....)))))))).))).)))))))))).))).	1.000 -21.10

rat

chromosome:11:73833400:73833481:1

intergenic

block319992 [novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.086	no	no	0.61/0.61	18/18/0.00	0.0	0.0	18	0	7	0	23	-4	5arm_loop_3arm	1	nd	0.28	4	23	7	na	na

		reads	miRBase family seed
seed	------------------------CACUGUG------------------------------------------	23	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T4S1	T4S2	T5S1	T5S2
	-----------------------TCACTGTGCTAGGCCCTG--------------------------------	18	2	2	3	8	4	3	1
rat	ggatgttctaagctcgaagttgtTCACTGTGCTAGGCCCTGgcctatgcttagtgacttctccagtgagacca
	*************************************************************************
rat	((....(((..(((.((((....((((((.(((((((....))))).)).))))))))))...))).))))).	0.870 -22.50

rat

chromosome:13:82126010:82126082:1

intergenic

block352335 [novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.030	no	no	0.26/0.28	18/19/0.00	0.0	0.5	11	0	2	0	5	-5	5arm_loop_3arm	1	nd	0.21	4	11	2	na	na

		reads	miRBase family seed
seed	------AAGGCAU-----------------------------------	11	novel
		len	cloning frequencies
			T4S1	T4S2
	-----TAAGGCATAAAGAAATAGT------------------------	19	2	4
	-----TAAGGCATAAAGAAATAG-------------------------	18	2	3
rat	ttattTAAGGCATAAAGAAATAGTtcttttagtatatgctttttataa
	************************************************
rat	.(((..(((((((((((((....)))))......))))))))..))).	1.000 -8.90

rat

chromosome:14:47387609:47387656:-1

intergenic

block391282 [novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.221	no	no	0.39/0.42	18/19/0.00	0.0	0.5	12	0	6	0	34	-5	5arm_loop	1	nd	0.28	5	12	6	na	na

		reads	miRBase family seed
seed	-----------------------------------GGGAGUU----------------------------------------------------------------------	12	novel
		len	cloning frequencies
			T1S1	T2S1	T2S2	T4S1	T4S2	T5S1
	----------------------------------TGGGAGTTAAGTAACTTG------------------------------------------------------------	18	1	1	2	-	2	-
	----------------------------------TGGGAGTTAAGTAACTTGG-----------------------------------------------------------	19	2	-	-	3	-	1
rat	aggtctgtcctgaatacatatattactttggaagTGGGAGTTAAGTAACTTGGacttgcttaactaactctctgttttccctggataaatgtgaaaacagtggatggtcgcc
	****************************************************************************************************************
rat	.(((((((((......(((((.(((((..(((((.(((((((((((((.......)))))))....))))))...)))))..)).))))))))........))))))..)))	0.610 -26.54

rat

chromosome:14:29238907:29239018:1

intergenic

block410445 [novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.155	no	no	0.53/0.56	18/20/0.08	0.0	0.0	7	0	3	0	42	-4	5arm_loop_3arm	1	nd	0.28	4	12	3	na	na

		reads	miRBase family seed
seed	-------------------------------------------GGAGUGU-------------------------------------------------------	12	miR-122
		len	cloning frequencies
			T1S1	T2S1	T2S2
	------------------------------------------TGGAGTGTGACACTGGGT---------------------------------------------	18	1	2	7
	------------------------------------------TGGAGTGTGACACTGGGTA--------------------------------------------	19	-	1	-
	------------------------------------------TGGAGTGTGACACTGGGTAG-------------------------------------------	20	-	1	-
rat	ggtgtaggtaactgtattccctagacaagaagagggtctctgTGGAGTGTGACACTGGGTagtggcaccatgactctagacccatgtctggatcggtctggcacc
	*********************************************************************************************************
rat	(((((.((..((((...(((..(((((......((((((....((((((((.((((....)))).)))....))))))))))).)))))))).)))))).)))))	0.930 -35.00

rat

chromosome:14:78355959:78356063:1

intergenic

block448398 [novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.039	no	no	0.36/0.42	19/22/0.04	0.0	0.0	21	0	4	0	43	-1	3arm_loop	3	nd	0.26	4	26	4	na	na

		reads	miRBase family seed
seed	------------------------------------------------------GACAUGA------------------------------------------------------	26	novel
		len	cloning frequencies
			T1S1	T1S2	T3S1	T5S1
	-----------------------------------------------------TGACATGAGGTTTGGGTTT-------------------------------------------	19	1	2	1	21
	-----------------------------------------------------TGACATGAGGTTTGGGTTTAAA----------------------------------------	22	-	-	-	1
rat	ggaacaaagaggtctgtgaagcccctctctccccaagtccatgctctggatccTGACATGAGGTTTGGGTTTaaagagaaaacaagaggcaggcataaggaagcagatctgtcca
	*******************************************************************************************************************
rat	(((......((((((((...(((((((((((((((((((((((.((........)))))).))))))))......))))......))))..)))........)))))))).))).	0.870 -33.50

rat

chromosome:15:49852678:49852792:-1

intergenic

block476925 [novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.109	no	no	0.61/0.63	18/19/0.00	0.0	0.0	8	0	6	0	31	-4	5arm_loop_3arm	1	nd	0.28	4	17	6	na	na

		reads	miRBase family seed
seed	--------------------------------CGCUGUG-------------------------------------------------------------------	16	novel
seed	-------------------------------UCGCUGU--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S1	T3S1	T3S2	T4S2	T5S1	T5S2
	-------------------------------TCGCTGTGATGATGGGCC---------------------------------------------------------	18	1	2	-	-	2	8
	-------------------------------TCGCTGTGATGATGGGCCC--------------------------------------------------------	19	-	-	1	1	1	-
	------------------------------CTCGCTGTGATGATGGGC----------------------------------------------------------	18	-	-	-	-	-	1
rat	ctccaactgagttctgagatgactccttgccTCGCTGTGATGATGGGCCcatttctttaactcacggcgcctcagtttcttcgcctccactctgaactcattgaag
	**********************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------	ENSRNOT00000048742 ENSRNOG00000009419 Ptprg
	--------------------------------------------------------------------------------------------------------------------	ENSRNOT00000042010 ENSRNOG00000009419 Ptprg
	--------------------------------------------------------------------------------------------------------------------	ENSRNOT00000043292 ENSRNOG00000009419 Ptprg
rat	...(((.(((((((.(((.(((....(((...((((((((.((((....))))........))))))))...))).....))).)))......))))))))))...	0.420 -25.10

rat

chromosome:15:14544520:14544625:1

block604263 [novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.025	no	no	0.33/0.44	18/21/0.54	0.9	0.5	26	0	4	0	6	-2	3arm	2	nd	0.29	4	35	4	na	na

		reads	miRBase family seed
seed	----------------------------------UCCUAUG-------------------	13	novel
seed	---------------------------------UUCCUAU--------------------	11	novel
seed	------------------------------------CUAUGAA-----------------	10	novel
seed	-------------------------------------UAUGAAU----------------	1	novel
		len	cloning frequencies
			T2S1	T2S2	T5S1	T5S2
	---------------------------------TTCCTATGAATTGACAGCCA-------	20	6	2	1	-
	-----------------------------------CCTATGAATTGACAGCCAT------	19	4	1	-	-
	-----------------------------------CCTATGAATTGACAGCCA-------	18	2	2	-	1
	--------------------------------TTTCCTATGAATTGACAGCCA-------	21	1	2	2	-
	--------------------------------TTTCCTATGAATTGACAGCC--------	20	-	1	2	-
	---------------------------------TTCCTATGAATTGACAGCC--------	19	1	-	-	1
	--------------------------------TTTCCTATGAATTGACAGC---------	19	2	-	-	-
	---------------------------------TTCCTATGAATTGACAGCCAT------	21	2	-	-	-
	--------------------------------TTTCCTATGAATTGACAG----------	18	-	1	-	-
	------------------------------------CTATGAATTGACAGCCAT------	18	-	1	-	-
rat	tgattctggttttgtccattctctgatccacgTTTCCTATGAATTGACAGCCATgagtta
	************************************************************
rat	((((((((((..((((.((((...((........))....)))).)))))))).))))))	1.000 -14.50

rat

chromosome:17:21603285:21603344:-1

intergenic

block1000436 [novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.377	no	no	0.50/0.55	18/21/0.62	0.0	0.8	13	0	8	0	11	-6	5arm_loop	1	nd	0.28	4	13	8	na	na

		reads	miRBase family seed
seed	------------GUUGUGU--------------------------------------------------	13	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S2	T5S2
	-----------TGTTGTGTAGCTGGCAAGGG--------------------------------------	20	2	1	1	1	-	1	-	-
	-----------TGTTGTGTAGCTGGCAAG----------------------------------------	18	-	1	-	-	1	-	1	-
	-----------TGTTGTGTAGCTGGCAAGGGA-------------------------------------	21	-	-	-	-	1	-	-	1
	-----------TGTTGTGTAGCTGGCAAGG---------------------------------------	19	-	-	-	1	-	1	-	-
rat	ttgaagtgttcTGTTGTGTAGCTGGCAAGGGAaagttgagcaaggacataacttctgtcacacttggac
	*********************************************************************
rat	((.((((((...(((((((.((((((........))).)))....))))))).......)))))).)).	0.780 -15.20