other hairpins
novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH (27 loci)
block2517374 [novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.439 | no | no | 0.47/0.53 | 18/21/0.35 | 0.0 | 0.9 | 28 | 0 | 10 | 0 | 13 | -6 | 5arm_loop_3arm | 1 | nd | 0.30 | 4 | 43 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --------------GGGAGUU-------------------------------------------- | 42 | novel | |||||||||
| seed | ---------------GGAGUUG------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------TGGGAGTTGGACCACTTT---------------------------------- | 18 | 4 | 4 | - | 1 | 1 | - | 1 | 4 | 2 | 1 | |
| -------------TGGGAGTTGGACCACTTTTG-------------------------------- | 20 | 2 | 2 | 2 | - | - | - | 1 | 1 | 2 | 2 | |
| -------------TGGGAGTTGGACCACTTTT--------------------------------- | 19 | 2 | 1 | 1 | - | 2 | 1 | - | 1 | - | 1 | |
| -------------TGGGAGTTGGACCACTTTTGG------------------------------- | 21 | 1 | - | - | - | - | 1 | - | - | - | 1 | |
| --------------GGGAGTTGGACCACTTTTG-------------------------------- | 19 | - | - | - | - | - | - | - | - | - | 1 | |
| rat | tctacccagacagTGGGAGTTGGACCACTTTTGgctttggtgtcccagtgaattagtatggtggg | |||||||||||
| ***************************************************************** | ||||||||||||
| --------------------------------------------------------------------------- | ENSRNOT00000043627 ENSRNOG00000011841 Mtap2 | |||||||||||
| --------------------------------------------------------------------------- | ENSRNOT00000045766 ENSRNOG00000011841 Mtap2 | |||||||||||
| --------------------------------------------------------------------------- | ENSRNOT00000037974 ENSRNOG00000011841 Mtap2 | |||||||||||
| --------------------------------------------------------------------------- | ENSRNOT00000046576 ENSRNOG00000011841 Mtap2 | |||||||||||
| rat | .(((((....((.(((((((..(((((....))).))..)).))))).)).........))))). | 0.510 -16.42 | ||||||||||
| rat | chromosome:9:65214351:65214415:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000037974|ENSRNOG00000011841 ## ENSRNOG00000011841|protein_coding|Mtap2|Microtubule-associated protein 2 (MAP 2) (MAP-2). [Source:UniProtKB/Swiss-Prot;Acc:P15146] |
block2547516 [novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.189 | no | no | 0.33/0.37 | 18/19/0.00 | 0.0 | 0.0 | 12 | 0 | 2 | 0 | 15 | -1 | 3arm_loop | 1 | nd | 0.21 | 4 | 15 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------CUUUGGU-------------------------- | 15 | miR-9 | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -------------------------------------------TCTTTGGTTAAAGCTTGAC--------------- | 19 | 8 | 4 | |
| -------------------------------------------TCTTTGGTTAAAGCTTGA---------------- | 18 | 1 | 2 | |
| rat | gaggttggctatgtttaagaaaaggaccccaaagtacacttttTCTTTGGTTAAAGCTTGACatgtccttggccttg | |||
| ***************************************************************************** | ||||
| rat | (((((.((.((((.(((((.....((((..((((..........))))))))....))))))))).))...))))). | 0.980 -17.80 | ||
| rat | chromosome:9:102226950:102227026:-1 | intergenic |
block2755065 [novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.330 | no | no | 0.32/0.35 | 18/20/0.08 | 0.0 | 0.0 | 9 | 0 | 5 | 0 | 35 | -1 | 3arm_loop | 1 | nd | 0.28 | 4 | 13 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------------------AAAGUCU--------------------------------------------- | 13 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S2 | T5S1 | |||
| -----------------------------------------------------------TAAAGTCTTGGGAAAAAC----------------------------------- | 18 | 5 | 1 | 2 | 2 | 1 | |
| -----------------------------------------------------------TAAAGTCTTGGGAAAAACAG--------------------------------- | 20 | 1 | - | - | - | - | |
| -----------------------------------------------------------TAAAGTCTTGGGAAAAACA---------------------------------- | 19 | - | - | - | - | 1 | |
| rat | atgactggtagattaagactctaaggaagggctggcaggtcaccgggctttttggatgaTAAAGTCTTGGGAAAAACagagctcccttcttcaaaatttgactgaaagcatg | ||||||
| **************************************************************************************************************** | |||||||
| rat | (((.((..(((.(((((......(((((((((((.....((.(((((((((.........))))))).))))....)))....)))))))).....))))))))..))))). | 0.960 -26.50 | |||||
| rat | chromosome:X:95427941:95428052:-1 | intergenic |
block3026700 [novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.042 | no | no | 0.39/0.42 | 18/20/0.05 | 0.0 | 0.2 | 22 | 0 | 9 | 0 | 33 | -1 | 3arm | 1 | nd | 0.28 | 4 | 22 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | ---------------------------------------------------------------UCACAUU--------------------------------------------- | 22 | miR-23a/23b | ||||||||
| len | cloning frequencies | ||||||||||
| T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------ATCACATTGCCATGGAAT----------------------------------- | 18 | 3 | 1 | 1 | 3 | 1 | 3 | 2 | 2 | 3 | |
| --------------------------------------------------------------ATCACATTGCCATGGAATG---------------------------------- | 19 | - | - | - | 2 | - | - | - | - | - | |
| --------------------------------------------------------------ATCACATTGCCATGGAATGA--------------------------------- | 20 | - | 1 | - | - | - | - | - | - | - | |
| rat | ggggttaggaaaaggaaatctcagtctgatttaaaaaaaaatgctgtgtgttatgtgagtcgATCACATTGCCATGGAATGAgtaagtctccctcctcctcctcttcctcctcct | ||||||||||
| ******************************************************************************************************************* | |||||||||||
| rat | ((((..(((((.((((......((...((((((..........(((((.((.((((((.....)))))).)))))))......))))))...)).....)))).))))).)))). | 0.520 -30.29 | |||||||||
| rat | chromosome:X:95205954:95206068:1 | intergenic |
block713205 [novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.050 | no | no | 0.39/0.45 | 18/25/0.35 | 0.0 | 0.8 | 12 | 0 | 3 | 0 | 10 | -6 | 5arm_loop | 1 | nd | 0.27 | 4 | 20 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------AGGAAAA-------------------------------------------------------- | 19 | novel | ||
| seed | ------------GGAAAAC------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ----------TAGGAAAACTCACATTGGCCATAGA--------------------------------------- | 25 | - | - | 9 | |
| ----------TAGGAAAACTCACATTGGCCAT------------------------------------------ | 22 | 2 | 1 | 3 | |
| ----------TAGGAAAACTCACATTGG---------------------------------------------- | 18 | 1 | - | 1 | |
| ----------TAGGAAAACTCACATTGGC--------------------------------------------- | 19 | - | - | 2 | |
| -----------AGGAAAACTCACATTGGCCA------------------------------------------- | 20 | - | - | 1 | |
| rat | cgcggtgtttTAGGAAAACTCACATTGGCCATAGAtgtcaaaaaagctgtgagtttcccagagctggagactgc | ||||
| ************************************************************************** | |||||
| rat | .((((((((((.((.((((((((((((((.......)))))......))))))))))).))))).....))))) | 1.000 -22.10 | |||
| rat | chromosome:18:63578354:63578427:-1 | intergenic |
block1093436 [novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.034 | no | no | 0.42/0.54 | 19/25/0.60 | 0.0 0.3 1.0 | 0.0 0.7 2.4 | 2 3 5 | 0 0 0 | 1 2 2 | 0 0 0 | 20 9 0 | -3 7 15 | 3arm_loop 3arm 3arm | 1 1 1 | nd nd nd | 0.29 0.23 0.37 | 2 4 4 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------AAUGUAG------------------ | 4 | novel | |
| seed | ---------------------------------------------GCGAGGU------------------------------------ | 2 | novel | |
| seed | -------------------------------------------------------GAGGCUC-------------------------- | 2 | novel | |
| seed | --------------------------------------------------------------------AGACUGG------------- | 1 | novel | |
| seed | --------------------------------------------------------AGGCUCU------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------------------------------------------CGAGGCTCTAATGTAGACTGGTCAC--------- | 25 | - | 2 | |
| --------------------------------------------TGCGAGGTTGCGAGGCTCTAATGT-------------------- | 24 | - | 2 | |
| --------------------------------------------------------------TAATGTAGACTGGTCACAG------- | 19 | - | 2 | |
| --------------------------------------------------------------TAATGTAGACTGGTCACAGCA----- | 21 | - | 1 | |
| -------------------------------------------------------------------TAGACTGGTCACAGCAGCTGA | 21 | 1 | - | |
| --------------------------------------------------------------TAATGTAGACTGGTCACAGCAG---- | 22 | - | 1 | |
| -------------------------------------------------------GAGGCTCTAATGTAGACTGGTC----------- | 22 | 1 | - | |
| rat | caatgtgatgacatagagaccatcagagtcgtcgctgtccctcaTGCGAGGTTGCGAGGCTCTAATGTAGACTGGTCACAGCAGCTGA | |||
| **************************************************************************************** | ||||
| rat | ((.(((..((((.(((....(((.((((((.((((....((((....))))..)))))))))).)))....)))))))..)))..)). | 0.990 -30.00 | ||
| rat | chromosome:20:5535257:5535344:1 | intergenic |
block1767287 [novel_lenNOK_cloningOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.085 | no | no | 0.32/0.39 | 18/25/0.67 | 0.0 | 0.7 | 10 | 0 | 2 | 0 | 21 | -9 | 5arm_loop_3arm | 1 | nd | 0.24 | 5 | 12 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------AGAACUU---------------------------------------------------- | 12 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------------TAGAACTTGCTTGACAGAAAATG------------------------------------- | 23 | - | 5 | |
| ---------------------TAGAACTTGCTTGACAGAAAAT-------------------------------------- | 22 | - | 3 | |
| ---------------------TAGAACTTGCTTGACAGAAAATGTT----------------------------------- | 25 | 1 | 2 | |
| ---------------------TAGAACTTGCTTGACAGA------------------------------------------ | 18 | - | 1 | |
| rat | gactaaaggcacgttgtggaaTAGAACTTGCTTGACAGAAAATGTTagaacaggtgtttgaaacccataaccccaaaggtc | |||
| ********************************************************************************* | ||||
| rat | ((((...((...(((((((..(((((((((.((((((.....))))))..))))).))))....))))))).))...)))) | 0.990 -18.40 | ||
| rat | chromosome:5:114565588:114565668:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH (27 loci)
block234806 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.284 | no | no | 0.43/0.56 | 18/26/0.60 | 0.0 0.0 | 0.0 0.0 | 2 6 | 0 0 | 1 6 | 0 0 | 6 32 | -6 -6 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.40 0.60 | 7 5 | 20 | 6 | 0 | 0 |
| reads | miRBase family seed | |||||||
| seed | -----------------------------GUACUGA-------------------------------------------- | 7 | novel | |||||
| seed | -----------------------UCUCUUG-------------------------------------------------- | 3 | novel | |||||
| seed | -------------------------------ACUGAAC------------------------------------------ | 3 | novel | |||||
| seed | -------GCACACC------------------------------------------------------------------ | 2 | novel | |||||
| seed | ----------------------------------GAACCCA--------------------------------------- | 1 | novel | |||||
| seed | ----------------------------UGUACUG--------------------------------------------- | 1 | novel | |||||
| seed | --------------------------CUUGUAC----------------------------------------------- | 1 | novel | |||||
| seed | ------------------------CUCUUGU------------------------------------------------- | 1 | novel | |||||
| seed | ------------------CUCGUUC------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T5S1 | |||
| ----------------------------TGTACTGAACCCACGTCCCA-------------------------------- | 20 | 2 | 1 | - | - | - | 4 | |
| ------TGCACACCGGACCTCGTTCTCTTGT------------------------------------------------- | 25 | - | - | - | - | - | 2 | |
| ----------------------TTCTCTTGTACTGAACCCACGTCCCA-------------------------------- | 26 | 1 | - | - | - | - | 1 | |
| ---------------------------TTGTACTGAACCCACGTCC---------------------------------- | 19 | - | - | - | - | - | 1 | |
| -----------------------TCTCTTGTACTGAACCCAC-------------------------------------- | 19 | - | - | 1 | - | - | - | |
| -----------------CCTCGTTCTCTTGTACTGAACCC---------------------------------------- | 23 | - | - | - | - | 1 | - | |
| ------------------------------TACTGAACCCACGTCCCA-------------------------------- | 18 | - | 1 | - | - | - | - | |
| -------------------------TCTTGTACTGAACCCACGTCCCA-------------------------------- | 23 | - | - | - | 1 | - | - | |
| ------------------------------TACTGAACCCACGTCCCATAAAA--------------------------- | 23 | - | - | - | - | - | 1 | |
| ---------------------------------TGAACCCACGTCCCATAAA---------------------------- | 19 | - | - | - | - | - | 1 | |
| ------------------------------TACTGAACCCACGTCCCATAA----------------------------- | 21 | - | - | - | - | - | 1 | |
| ----------------------TTCTCTTGTACTGAACCCACGTC----------------------------------- | 23 | - | - | - | - | - | 1 | |
| rat | gaggggTGCACACCGGACCTCGTTCTCTTGTACTGAACCCACGTCCCAtaaaattcacatttcaaaggtgtgtggttttc | |||||||
| ******************************************************************************** | ||||||||
| rat | (((((.((((((((((((...((((.........))))....))))....................)))))))).))))) | 0.520 -19.15 | ||||||
| rat | chromosome:12:44302249:44302328:1 | intergenic |
block871236 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.435 | no | no | 0.21/0.57 | 19/22/0.53 | 0.0 0.7 0.0 0.0 0.0 | 0.0 0.3 0.0 0.0 0.0 | 1 6 4 2 2 | 0 0 0 0 0 | 1 2 1 1 1 | 0 0 0 0 0 | 6 10 17 11 4 | -4 -11 -15 -6 1 | 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.37 0.50 0.58 0.52 0.43 | 5 9 9 5 5 | 15 | 2 | 0 | -20 |
| reads | miRBase family seed | |||
| seed | -----------GUGAAUC-------------------------------------- | 4 | novel | |
| seed | ------------------UGAUUUU------------------------------- | 4 | novel | |
| seed | -------------------------AACUUUU------------------------ | 2 | novel | |
| seed | --------------------------------AGGAAGC----------------- | 2 | novel | |
| seed | -------------GAAUCUG------------------------------------ | 2 | novel | |
| seed | -------GACUGUG------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------CTGATTTTAACTTTTAGGA-------------------- | 19 | - | 4 | |
| ----------TGTGAATCTGATTTTAACTTTT------------------------ | 22 | 1 | 3 | |
| ------------TGAATCTGATTTTAACTTT------------------------- | 19 | 1 | 1 | |
| -------------------------------TAGGAAGCCTCCAGCCTCAGT---- | 21 | - | 2 | |
| ------------------------TAACTTTTAGGAAGCCTCCAG----------- | 21 | - | 2 | |
| ------TGACTGTGAATCTGATTTT------------------------------- | 19 | - | 1 | |
| rat | gcactctgacTGTGAATCTGATTTTAACTTTTAGGAAGCCTCCAGCCTCAGTatgc | |||
| ******************************************************** | ||||
| rat | (((..(((((((.((.(((((.........))))).....)))))..))))..))) | 0.810 -9.20 | ||
| rat | chromosome:1:102928247:102928302:-1 | intergenic |
block2140560 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.154 | no | no | 0.39/0.53 | 19/26/0.62 | 0.0 0.0 0.8 | 0.2 0.3 1.3 | 4 3 6 | 0 0 0 | 1 1 4 | 0 0 0 | 14 25 19 | 0 -13 -6 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.35 0.54 0.50 | 4 6 4 | 13 | 4 | -1 | -7 |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------CCCAUGA------------------------------------ | 5 | novel | |||
| seed | ---------------CAGUCAG------------------------------------------------------------ | 4 | novel | |||
| seed | --------------------------GAAGAUU------------------------------------------------- | 3 | novel | |||
| seed | --------------------------------------------GACCUCC------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S2 | T5S1 | T5S2 | |||
| --------------TCAGTCAGTCGTGAAGATTGTTTC-------------------------------------------- | 24 | - | - | 3 | - | |
| --------------------------------------TCCCATGACCTCCAATCTGTG----------------------- | 21 | - | 1 | 2 | - | |
| -------------------------TGAAGATTGTTTCTCCCATGACCTC-------------------------------- | 25 | - | - | 2 | - | |
| --------------------------------------TCCCATGACCTCCAATCTG------------------------- | 19 | - | - | 1 | 1 | |
| -------------------------------------------TGACCTCCAATCTGTGCCAA------------------- | 20 | 1 | - | - | - | |
| -------------------------TGAAGATTGTTTCTCCCATGACCTCC------------------------------- | 26 | - | - | 1 | - | |
| --------------TCAGTCAGTCGTGAAGATTGTTT--------------------------------------------- | 23 | - | - | 1 | - | |
| rat | gctttcacagtgtcTCAGTCAGTCGTGAAGATTGTTTCTCCCATGACCTCCAATCTGTGCCAAggacctgagaacttaggca | |||||
| ********************************************************************************** | ||||||
| rat | ((((....(((.((((((((....((..((((((..((......))....))))))..))....))).)))))))).)))). | 0.410 -20.30 | ||||
| rat | chromosome:7:96047086:96047167:-1 | intergenic |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 30749 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.