other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH (27 loci)
sblock9119 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.975 | no | no | 0.35/0.64 | 19/22/0.31 | 0.0 0.0 0.3 | 0.0 0.0 0.0 | 1 3 12 | 0 0 0 | 1 2 1 | 0 0 0 | 22 41 27 | -1 -17 -1 | 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.41 0.63 0.40 | 3 9 4 | 16 | 2 | 0 | -4 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------AGAUCAU-------------------------------------- | 8 | novel | |
| seed | ----------------------------------------------------UAGAUCA--------------------------------------- | 4 | novel | |
| seed | ------------------------------------------GCCCUGC------------------------------------------------- | 3 | novel | |
| seed | -----------------------GACGCCU-------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| ----------------------------------------------------TAGATCATATGACTTGGAC--------------------------- | 19 | - | 8 | |
| ---------------------------------------------------TTAGATCATATGACTTGGAC--------------------------- | 20 | - | 4 | |
| -----------------------------------------TGCCCTGCCTTTAGATCAT-------------------------------------- | 19 | 1 | 2 | |
| ----------------------TGACGCCTGCTCTCGACTCTGC------------------------------------------------------ | 22 | - | 1 | |
| rat | acaaaacccaaaatagcctgcctgacgcctgctctcgactctgccctgcctTTAGATCATATGACTTGGACgtagccccagcgctgtgtttccttgtc | |||
| ************************************************************************************************** | ||||
| rat | ((((........((((((((....(((((...((..((.((((.........))))))....))...)).))).....))).)))))......)))). | 0.710 -14.34 | ||
| rat | chromosome:4:164268633:164268730:1 | intergenic |
sblock9180 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.138 | no | no | 0.40/0.58 | 19/26/0.50 | 0.2 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 | 5 1 1 4 1 | 0 0 0 0 0 | 2 1 1 3 1 | 0 0 0 0 0 | 0 14 21 24 12 | 31 15 4 -4 7 | 5arm 5arm 5arm 3arm_loop 3arm | 2 2 3 4 4 | nd nd nd nd nd | 0.68 0.32 0.31 0.42 0.40 | 13 4 4 4 4 | 12 | 4 | 0 | 17 |
| reads | miRBase family seed | |||||
| seed | -GACAUGC---------------------------------------------------------------------------------------- | 4 | novel | |||
| seed | ------------------------------------------------------GGGUAGG----------------------------------- | 4 | novel | |||
| seed | ----------------------AAGGUGU------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------CACAGGA------------------------ | 1 | novel | |||
| seed | ---------------GUUCUUC-------------------------------------------------------------------------- | 1 | miR-22* | |||
| seed | --ACAUGCC--------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------TGGGTAGGACCTCACAGGA------------------------ | 19 | - | 1 | 2 | 1 | |
| TGACATGCCACATTTGTTCT---------------------------------------------------------------------------- | 20 | 1 | - | 3 | - | |
| ----------------------------------------------------------------TCACAGGATGGCCACAATGA------------ | 20 | - | - | 1 | - | |
| -GACATGCCACATTTGTTCT---------------------------------------------------------------------------- | 19 | - | - | 1 | - | |
| ---------------------CAAGGTGTCGTAAAGGTTGGGTGAGG------------------------------------------------- | 26 | - | - | 1 | - | |
| --------------TGTTCTTCAAGGTGTCGTAAAG------------------------------------------------------------ | 22 | - | - | 1 | - | |
| rat | TGACATGCCACATTTGTTCTTCAAGGTGTCGTAAAGGTTGGGTGAGGcctgtgTGGGTAGGACCTCACAGGATGGCCACAATGAattgaagtgact | |||||
| ************************************************************************************************ | ||||||
| rat | ...............(((((((((....((((...(((((.((((((((((......)))).))))))....)))))...)))).)))))).))). | 0.750 -28.10 | ||||
| rat | chromosome:4:164795379:164795474:1 | intergenic |
sblock9379 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.448 | no | no | 0.28/0.65 | 18/25/0.60 | 0.0 0.0 0.0 0.0 0.8 | 0.0 0.0 0.0 0.0 2.0 | 1 1 3 1 4 | 0 0 0 0 0 | 1 1 1 1 3 | 0 0 0 0 0 | 9 16 24 31 14 | 6 -3 -11 -17 -9 | 5arm 5arm_loop 5arm_loop 5arm_loop_3arm 3arm_loop | 1 1 1 1 1 | nd nd nd nd nd | 0.39 0.35 0.65 0.63 0.44 | 5 4 12 12 7 | 10 | 4 | 0 | 9 |
| reads | miRBase family seed | |||||
| seed | -------------------------AGGCGUG-------------------------------------------- | 3 | novel | |||
| seed | --------------------------------------AUACCUU------------------------------- | 2 | novel | |||
| seed | --------------------------------GCCUUUA------------------------------------- | 1 | novel | |||
| seed | -----------------UAAUCGU---------------------------------------------------- | 1 | novel | |||
| seed | ----------CCUUUAU----------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------UAUACCU-------------------------------- | 1 | novel | |||
| seed | ----------------------------------------ACCUUCC----------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T3S2 | T4S2 | T5S1 | |||
| ------------------------TAGGCGTGGCCTTTATACCT-------------------------------- | 20 | - | - | - | 3 | |
| -------------------------------------TATACCTTCCACCCTCGCCCCATTG-------------- | 25 | 2 | - | - | - | |
| ---------------------------------------TACCTTCCACCCTCGCCCCA----------------- | 20 | - | 1 | - | - | |
| -------------------------------GGCCTTTATACCTTCCACC-------------------------- | 19 | - | 1 | - | - | |
| ------------------------------------TTATACCTTCCACCCTCGCCC------------------- | 21 | - | - | 1 | - | |
| ---------TCCTTTATTAATCGTTAG------------------------------------------------- | 18 | - | - | - | 1 | |
| ----------------TTAATCGTTAGGCGTGGCCT---------------------------------------- | 20 | 1 | - | - | - | |
| rat | gctgcaagcTCCTTTATTAATCGTTAGGCGTGGCCTTTATACCTTCCACCCTCGCCCCATTGgttccaagtaagca | |||||
| **************************************************************************** | ||||||
| rat | (((....(((.....((((((.((.(((.((((............))))))).))...))))))....))).))). | 0.610 -13.20 | ||||
| rat | chromosome:5:114519050:114519125:-1 | intergenic |
sblock9984 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.283 | no | no | 0.42/0.47 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 21 | 0 0 | 1 7 | 0 0 | 6 12 | 5 -5 | 5arm 3arm_loop | 1 1 | nd nd | 0.47 0.44 | 4 4 | 33 | 7 | 0 | 8 |
| reads | miRBase family seed | ||||||||
| seed | ----------------------------------CAAGGUU---------------------- | 32 | novel | ||||||
| seed | -------CGUGUCU------------------------------------------------- | 1 | miR-187 | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S1 | T4S2 | T5S2 | |||
| ---------------------------------CCAAGGTTAATCACAGCA------------ | 18 | 6 | 1 | 1 | 1 | 3 | 15 | 4 | |
| ------TCGTGTCTGCTTTTTGTGT-------------------------------------- | 19 | - | - | 1 | - | - | - | - | |
| ---------------------------------CCAAGGTTAATCACAGCAC----------- | 19 | - | - | - | 1 | - | - | - | |
| rat | gcgctctcgtgtctgctttttgtgtctaacactCCAAGGTTAATCACAGCAcagtcgtgggtg | ||||||||
| *************************************************************** | |||||||||
| rat | .(((((.((...(((....(((((..((((........))))..)))))..))).)).))))) | 1.000 -15.80 | |||||||
| rat | chromosome:6:53722368:53722430:-1 | intergenic |
novel_lenNOK_cloningOK_shortStem_bulgeHIGH (27 loci)
block57408 [novel_lenNOK_cloningOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.093 | no | no | 0.33/0.39 | 18/19/0.00 | 0.1 | 0.5 | 13 | 0 | 6 | 0 | 1 | 25 | 3arm | 2 | nd | 0.21 | 4 | 13 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ---------------------------------------------------------------------------------------------AGCAGCA------------ | 12 | miR-15b/16/195/322/497 | |||||
| seed | --------------------------------------------------------------------------------------------UAGCAGC------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T4S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------------------------------------------TAGCAGCACAGAAAATACA- | 19 | - | 3 | 1 | 1 | 2 | 1 | |
| --------------------------------------------------------------------------------------------TAGCAGCACAGAAAATAC-- | 18 | 1 | - | - | 1 | - | 2 | |
| -------------------------------------------------------------------------------------------TTAGCAGCACAGAAAATA--- | 18 | 1 | - | - | - | - | - | |
| rat | gtgtgtttatttcattcacattgctttctccctcaagtctgagatccaaaaaggcccagacaatatgtctttttctctcactcttaaatccTTAGCAGCACAGAAAATACAt | |||||||
| **************************************************************************************************************** | ||||||||
| rat | (((((((.......(((...(((((.........(((..(((((...((((((((...........)))))))).)))))..)))........)))))....)))))))))) | 0.840 -17.74 | ||||||
| rat | chromosome:10:8454128:8454239:1 | intergenic |
block110133 [novel_lenNOK_cloningOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.240 | no | no | 0.33/0.33 | 18/18/0.00 | 0.0 | 0.0 | 12 | 0 | 5 | 0 | 1 | 5 | 3arm | 1 | nd | 0.28 | 4 | 17 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------CAUAGAU----------- | 17 | novel | ||||
| len | cloning frequencies | ||||||
| T2S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------CCATAGATGAAATACTGT- | 18 | 1 | 2 | 2 | 5 | 7 | |
| rat | cactgtaagtttgtaggtactcaaaagcacaggttaCCATAGATGAAATACTGTg | ||||||
| ******************************************************* | |||||||
| rat | (((.(((.((((((.((((.((.........)).))))))))))....))).))) | 0.940 -9.50 | |||||
| rat | chromosome:11:9981786:9981840:-1 | intergenic |
block345410 [novel_lenNOK_cloningOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.067 | no | no | 0.11/0.16 | 18/19/0.00 | 0.0 | 0.2 | 12 | 0 | 5 | 0 | 1 | 15 | 3arm | 1 | nd | 0.28 | 4 | 12 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------------------AUAUUAU------------ | 12 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S2 | T5S1 | |||
| ------------------------------------------------------AATATTATGTTAAGTTTT-- | 18 | 3 | 2 | 1 | 1 | 3 | |
| ------------------------------------------------------AATATTATGTTAAGTTTTC- | 19 | 2 | - | - | - | - | |
| rat | gaaatattaaaacactattattatagaatcaagaggaaactatgcatttctggtAATATTATGTTAAGTTTTCa | ||||||
| ************************************************************************** | |||||||
| rat | ((((......((((.((.((((((((((.....((....))......))))).))))).))))))....)))). | 1.000 -12.10 | |||||
| rat | chromosome:14:30969056:30969129:-1 | intergenic |
block347941 [novel_lenNOK_cloningOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.544 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 14 | 0 | 3 | 0 | 2 | 31 | 3arm | 1 | nd | 0.28 | 4 | 15 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------------------------------------GGAAUGU------------ | 15 | miR-1/206 | ||
| len | cloning frequencies | ||||
| T2S1 | T4S1 | T4S2 | |||
| ------------------------------------------------------------------------------------------------TGGAATGTAGGATTTGTG-- | 18 | 1 | 10 | 4 | |
| rat | gcctaaaggacatttggatccatgcaaaggaatgagaagcccagggaggcaggagtcagagctctctctcattttccttccttcccttgcccttgaTGGAATGTAGGATTTGTGct | ||||
| ******************************************************************************************************************** | |||||
| ------------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000002991 ENSRNOG00000002196 Ociad2 | ||||
| rat | ((.((((..((((.....(((((.(((.((...(((.......((((((.(((((..((((....))))....))))).))))))))).)).))))))))))))....)))).)). | 0.420 -30.31 | |||
| rat | chromosome:14:37237855:37237970:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000002991|ENSRNOG00000002196 ## ENSRNOG00000002196|protein_coding|Ociad2|OCIA domain containing 2 Gene [Source:MGI (curated);Acc:Ociad2-001] |
block351975 [novel_lenNOK_cloningOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.237 | no | no | 0.47/0.50 | 18/19/0.00 | 0.0 | 0.0 | 24 | 0 | 9 | 0 | 2 | 19 | 5arm | 1 | nd | 0.28 | 4 | 26 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | ---GGCCAUU-------------------------------------------------------------------- | 26 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --TGGCCATTTCCTCTAAGG---------------------------------------------------------- | 18 | 2 | 2 | 4 | 6 | 2 | 2 | 1 | 4 | 2 | |
| --TGGCCATTTCCTCTAAGGA--------------------------------------------------------- | 19 | - | - | 1 | - | - | - | - | - | - | |
| rat | ctTGGCCATTTCCTCTAAGGattctcaacctctacctgcctcaccaccctgcagacctccttcagagtaaatcagaga | ||||||||||
| ****************************************************************************** | |||||||||||
| rat | (((....((((.(((((((((..............((((...........))))...))))).)))).))))..))). | 0.500 -10.83 | |||||||||
| rat | chromosome:14:46439364:46439441:-1 | intergenic |
block364805 [novel_lenNOK_cloningOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.506 | no | no | 0.78/0.78 | 18/18/0.00 | 0.0 | 0.0 | 11 | 0 | 4 | 0 | 0 | 14 | 3arm | 1 | nd | 0.24 | 4 | 16 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------------------CCCUGAG---------- | 16 | miR-125a/125b/351 | |||
| len | cloning frequencies | |||||
| T1S1 | T3S1 | T4S1 | T5S2 | |||
| ---------------------------------------------------------TCCCTGAGACCCCGGGCC | 18 | 11 | 1 | 1 | 3 | |
| rat | ggccgtggagtggtacttgcgaaagaggaactgggtcttctgcagcacccggtgactTCCCTGAGACCCCGGGCC | |||||
| *************************************************************************** | ||||||
| ------------------------------------------------------------------------------------- | ENSRNOT00000009960 ENSRNOG00000007033 NP_001100695.1 | |||||
| ------------------------------------------------------------------------------------- | ENSRNOT00000036367 ENSRNOG00000007033 NP_001100695.1 | |||||
| rat | ((((.(((...(((.(((......(((..(((((((((.....)).)))))))..)))....))))))))))))) | 0.980 -26.40 | ||||
| rat | chromosome:14:80214008:80214082:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000009960|ENSRNOG00000007033 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000036380|ENSRNOG00000007033 ## ENSRNOG00000007033|protein_coding|NP_001100695.1|sortilin-related VPS10 domain containing receptor 2 [Source:RefSeq_peptide;Acc:NP_001100695] |
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