miR-Intess: classification

other hairpins

novel_lenNOK_Multihit_shortStem_randfoldOK_bulgeHIGH (26 loci)

block843258 [novel_lenNOK_Multihit_shortStem_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.008	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	1	14	3arm	33	nd	0.26	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UGCCUGC------------	1	novel
		len	cloning frequencies
			T2S2
	------------------------------------------------ATGCCTGCTGTGTGGGAGC-	19	1
rat	ggctcatccacagacatctcacactctccctgctgggagttaggctggATGCCTGCTGTGTGGGAGCt
	********************************************************************
rat	(((((.(((((((.((((.((..(((((((....)))))..))..))))))....))))).)))))))	0.410 -27.80

rat

chromosome:1:49077149:49077216:-1

intergenic

block843889 [novel_lenNOK_Multihit_shortStem_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.008	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	1	14	3arm	33	nd	0.26	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UGCCUGC------------	1	novel
		len	cloning frequencies
			T2S2
	------------------------------------------------ATGCCTGCTGTGTGGGAGC-	19	1
rat	ggctcatccacagacatctcacactctccctgctgggagttaggctggATGCCTGCTGTGTGGGAGCt
	********************************************************************
rat	(((((.(((((((.((((.((..(((((((....)))))..))..))))))....))))).)))))))	0.410 -27.80

rat

chromosome:1:49997335:49997402:-1

intergenic

block845163 [novel_lenNOK_Multihit_shortStem_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.008	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	1	14	3arm	33	nd	0.26	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UGCCUGC------------	1	novel
		len	cloning frequencies
			T2S2
	------------------------------------------------ATGCCTGCTGTGTGGGAGC-	19	1
rat	ggctcatccacagacatctcacactctccctgctgggagttaggctggATGCCTGCTGTGTGGGAGCt
	********************************************************************
rat	(((((.(((((((.((((.((..(((((((....)))))..))..))))))....))))).)))))))	0.410 -27.80

rat

chromosome:1:50580535:50580602:-1

intergenic

block845313 [novel_lenNOK_Multihit_shortStem_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.008	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	1	14	3arm	33	nd	0.26	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UGCCUGC------------	1	novel
		len	cloning frequencies
			T2S2
	------------------------------------------------ATGCCTGCTGTGTGGGAGC-	19	1
rat	ggctcatccacagacatctcacactctccctgctgggagttaggctggATGCCTGCTGTGTGGGAGCt
	********************************************************************
rat	(((((.(((((((.((((.((..(((((((....)))))..))..))))))....))))).)))))))	0.410 -27.80

rat

chromosome:1:50621531:50621598:-1

intergenic

block845356 [novel_lenNOK_Multihit_shortStem_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.008	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	1	14	3arm	33	nd	0.26	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UGCCUGC------------	1	novel
		len	cloning frequencies
			T2S2
	------------------------------------------------ATGCCTGCTGTGTGGGAGC-	19	1
rat	ggctcatccacagacatctcacactctccctgctgggagttaggctggATGCCTGCTGTGTGGGAGCt
	********************************************************************
rat	(((((.(((((((.((((.((..(((((((....)))))..))..))))))....))))).)))))))	0.410 -27.80

rat

chromosome:1:50653831:50653898:-1

intergenic

block845469 [novel_lenNOK_Multihit_shortStem_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.008	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	1	14	3arm	33	nd	0.26	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UGCCUGC------------	1	novel
		len	cloning frequencies
			T2S2
	------------------------------------------------ATGCCTGCTGTGTGGGAGC-	19	1
rat	ggctcatccacagacatctcacactctccctgctgggagttaggctggATGCCTGCTGTGTGGGAGCt
	********************************************************************
rat	(((((.(((((((.((((.((..(((((((....)))))..))..))))))....))))).)))))))	0.410 -27.80

rat

chromosome:1:50726303:50726370:-1

intergenic

block846003 [novel_lenNOK_Multihit_shortStem_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.008	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	1	14	3arm	33	nd	0.26	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UGCCUGC------------	1	novel
		len	cloning frequencies
			T2S2
	------------------------------------------------ATGCCTGCTGTGTGGGAGC-	19	1
rat	ggctcatccacagacatctcacactctccctgctgggagttaggctggATGCCTGCTGTGTGGGAGCt
	********************************************************************
rat	(((((.(((((((.((((.((..(((((((....)))))..))..))))))....))))).)))))))	0.410 -27.80

rat

chromosome:1:50889858:50889925:-1

intergenic

block846603 [novel_lenNOK_Multihit_shortStem_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.008	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	1	14	3arm	33	nd	0.26	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UGCCUGC------------	1	novel
		len	cloning frequencies
			T2S2
	------------------------------------------------ATGCCTGCTGTGTGGGAGC-	19	1
rat	ggctcatccacagacatctcacactctccctgctgggagttaggctggATGCCTGCTGTGTGGGAGCt
	********************************************************************
rat	(((((.(((((((.((((.((..(((((((....)))))..))..))))))....))))).)))))))	0.410 -27.80

rat

chromosome:1:51367555:51367622:-1

intergenic

block847044 [novel_lenNOK_Multihit_shortStem_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.008	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	1	14	3arm	33	nd	0.26	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UGCCUGC------------	1	novel
		len	cloning frequencies
			T2S2
	------------------------------------------------ATGCCTGCTGTGTGGGAGC-	19	1
rat	ggctcatccacagacatctcacactctccctgctgggagttaggctggATGCCTGCTGTGTGGGAGCt
	********************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted
rat	(((((.(((((((.((((.((..(((((((....)))))..))..))))))....))))).)))))))	0.410 -27.80

rat

chromosome:1:51794924:51794991:-1

novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH (26 loci)

block1499797 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.081	no	no	0.26/0.43	19/23/0.24	0.0 0.0	0.0 0.0	3 16	0 0	2 5	0 0	20 32	-2 -10	5arm_loop 3arm_loop	2 2	nd nd	0.35 0.53	3 6	33	5	0	-5

		reads	miRBase family seed
seed	---------------------------------CCUAAAG------------------------------------------------------	18	novel
seed	--------------------------------UCCUAAA-------------------------------------------------------	4	novel
seed	------------------------------------AAAGUCU---------------------------------------------------	3	novel
seed	---------------------AAGGGUG------------------------------------------------------------------	3	novel
seed	----------------------------------------------AGCAAUU-----------------------------------------	3	novel
seed	-------------------------------------------UAUAGCA--------------------------------------------	2	novel
		len	cloning frequencies
			T1S1	T1S2	T4S1	T4S2	T5S1
	--------------------------------TCCTAAAGTCTTATAGCAA-------------------------------------------	19	-	-	1	1	16
	-------------------------------TTCCTAAAGTCTTATAGCA--------------------------------------------	19	-	1	-	-	3
	---------------------------------------------TAGCAATTGTGAAGGTGTC------------------------------	19	-	-	-	-	3
	--------------------TAAGGGTGTCCTTCCTAAAGTCT---------------------------------------------------	23	2	-	-	-	1
	-----------------------------------TAAAGTCTTATAGCAATTGTGA-------------------------------------	22	-	-	-	-	2
	------------------------------------------TTATAGCAATTGTGAAGGTGTC------------------------------	22	-	-	-	-	1
	------------------------------------------TTATAGCAATTGTGAAGGTG--------------------------------	20	1	-	-	-	-
	-----------------------------------TAAAGTCTTATAGCAATTGTGAA------------------------------------	23	-	-	-	-	1
rat	gggtcttctatgcccacttttaagggtgtcctTCCTAAAGTCTTATAGCAAttgtgaaggtgtctcttgggcatatgtgggaggacaggctcca
	**********************************************************************************************
rat	(((((((((...(((((.((((((((...(((((.(((.((......))..))).)))))...)))))))).....))))).))).)))).)).	0.510 -28.40