other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH (26 loci)
sblock8216 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.868 | no | no | 0.37/0.48 | 18/21/0.54 | 0.0 0.0 0.3 | 0.0 0.0 0.5 | 5 1 6 | 0 0 0 | 2 1 2 | 0 0 0 | 23 41 38 | -2 -17 -21 | 5arm_loop 5arm_loop 3arm_loop | 2 2 2 | nd nd nd | 0.38 1.00 0.85 | 3 18 17 | 13 | 2 | 0 | -16 |
| reads | miRBase family seed | |||
| seed | ------------------------GGGAUUC------------------------------------------------------------------------ | 6 | novel | |
| seed | ---------------------------------------------AGCCAGA--------------------------------------------------- | 4 | novel | |
| seed | ----------------------------------------------GCCAGAC-------------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------GAUAGCC------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------TGGGATTCTTGCTCAGGTAGA----------------------------------------------------------- | 21 | 1 | 5 | |
| --------------------------------------------TAGCCAGACTCCAAAATTA---------------------------------------- | 19 | 3 | 1 | |
| -----------------------------------------AGATAGCCAGACTCCAAA-------------------------------------------- | 18 | - | 1 | |
| ---------------------------------------------AGCCAGACTCCAAAATTAT--------------------------------------- | 19 | - | 1 | |
| ---------------------------------------------AGCCAGACTCCAAAATTATG-------------------------------------- | 20 | - | 1 | |
| rat | atgccatttgcttaaatagcctaTGGGATTCTTGCTCAGGTAGATAGCCAGACTCCAAAATTAtgcccagtaactctccttccactttgtgttccagatgcat | |||
| ******************************************************************************************************* | ||||
| rat | (((.((((((.....((((.....((((...(((((..((((.....................)))).)))))...))))......))))....))))))))) | 0.430 -14.70 | ||
| rat | chromosome:3:141754607:141754709:1 | intergenic |
sblock8225 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.868 | no | no | 0.37/0.48 | 18/21/0.54 | 0.0 0.0 0.3 | 0.0 0.0 0.5 | 5 1 6 | 0 0 0 | 2 1 2 | 0 0 0 | 23 41 38 | -2 -17 -21 | 5arm_loop 5arm_loop 3arm_loop | 2 2 2 | nd nd nd | 0.38 1.00 0.85 | 3 18 17 | 13 | 2 | 0 | -16 |
| reads | miRBase family seed | |||
| seed | ------------------------GGGAUUC------------------------------------------------------------------------ | 6 | novel | |
| seed | ---------------------------------------------AGCCAGA--------------------------------------------------- | 4 | novel | |
| seed | ----------------------------------------------GCCAGAC-------------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------GAUAGCC------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------TGGGATTCTTGCTCAGGTAGA----------------------------------------------------------- | 21 | 1 | 5 | |
| --------------------------------------------TAGCCAGACTCCAAAATTA---------------------------------------- | 19 | 3 | 1 | |
| -----------------------------------------AGATAGCCAGACTCCAAA-------------------------------------------- | 18 | - | 1 | |
| ---------------------------------------------AGCCAGACTCCAAAATTAT--------------------------------------- | 19 | - | 1 | |
| ---------------------------------------------AGCCAGACTCCAAAATTATG-------------------------------------- | 20 | - | 1 | |
| rat | atgccatttgcttaaatagcctaTGGGATTCTTGCTCAGGTAGATAGCCAGACTCCAAAATTAtgcccagtaactctccttccactttgtgttccagatgcat | |||
| ******************************************************************************************************* | ||||
| rat | (((.((((((.....((((.....((((...(((((..((((.....................)))).)))))...))))......))))....))))))))) | 0.430 -14.70 | ||
| rat | chromosome:3:141756415:141756517:1 | intergenic |
sblock8472 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.263 | no | no | 0.36/0.44 | 18/22/0.12 | 0.0 0.0 0.0 | 0.0 0.0 1.5 | 1 9 2 | 0 0 0 | 1 2 1 | 0 0 0 | 12 24 15 | 4 -2 4 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.32 0.37 0.42 | 3 3 3 | 16 | 2 | 0 | -8 |
| reads | miRBase family seed | |||
| seed | --------------------------------------GUCCAUG----------------------------------- | 11 | novel | |
| seed | --------------------------------------------GCUCUGA----------------------------- | 2 | novel | |
| seed | -------------AGAAAAG------------------------------------------------------------ | 1 | novel | |
| seed | ------------------------------------AUGUCCA------------------------------------- | 1 | novel | |
| seed | ----------------------------------------CCAUGCU--------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------------------------TGTCCATGCTCTGATTTGA------------------------ | 19 | - | 9 | |
| -------------------------------------TGTCCATGCTCTGATTTG------------------------- | 18 | 1 | 1 | |
| -------------------------------------------TGCTCTGATTTGATTTGCCTAT--------------- | 22 | - | 1 | |
| -----------------------------------TATGTCCATGCTCTGATTTGA------------------------ | 21 | - | 1 | |
| ------------CAGAAAAGTCTTCTCAACA------------------------------------------------- | 19 | - | 1 | |
| ---------------------------------------TCCATGCTCTGATTTGATT---------------------- | 19 | - | 1 | |
| -------------------------------------------TGCTCTGATTTGATTTGCC------------------ | 19 | - | 1 | |
| rat | cagttaatatctcagaaaagtcttctcaacatggataTGTCCATGCTCTGATTTGAtttgcctatacagaatccaagctc | |||
| ******************************************************************************** | ||||
| rat | .((((....(((.((..(((((...(((.((((((....))))))...)))...)))))..))....))).....)))). | 0.680 -12.30 | ||
| rat | chromosome:4:116144209:116144288:-1 | intergenic |
sblock8494 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.056 | no | no | 0.47/0.56 | 19/25/0.00 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 | 1 1 8 1 2 | 0 0 0 0 0 | 1 1 3 1 1 | 0 0 0 0 0 | 8 27 38 14 0 | -1 -14 -9 9 29 | 5arm_loop 5arm_loop_3arm 3arm_loop 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.36 0.58 0.58 0.36 0.78 | 2 10 8 4 13 | 15 | 3 | 0 | -33 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------AGAGUUU------------------------------------------------- | 10 | novel | ||
| seed | ------------------------------------------------------------------------UGAGCAA----------- | 2 | novel | ||
| seed | ----------------------------CCCCAUA------------------------------------------------------- | 1 | novel | ||
| seed | ---------GAGAGCA-------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------AGCCUUC------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S1 | T5S1 | |||
| ---------------------------------TAGAGTTTAGGGGCACCTT-------------------------------------- | 19 | 1 | 1 | 8 | |
| -----------------------------------------------------------------------CTGAGCAAGGCATGGTAAA | 19 | - | - | 2 | |
| ---------------------------------------------------TAGCCTTCCAGCCCTCTTTCCTGAG-------------- | 25 | - | - | 1 | |
| --------AGAGAGCATAGGGTACTGTTCCCCA--------------------------------------------------------- | 25 | - | - | 1 | |
| ---------------------------TCCCCATAGAGTTTAGGGG-------------------------------------------- | 19 | - | - | 1 | |
| rat | gctgggggagagagcatagggtactgttccccaTAGAGTTTAGGGGCACCTTagccttccagccctctttcctgagcaaggcatggtaaa | ||||
| ****************************************************************************************** | |||||
| ---------------------------------------------------------------------------------------------------- | ENSRNOT00000057552 ENSRNOG00000037879 | ||||
| rat | ((((((..((((.((..(((.((..((.((((..........)))).))..)).)))....)).))))..))).)))............. | 0.910 -31.90 | |||
| rat | chromosome:4:119285695:119285784:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000057552|ENSRNOG00000037879 ## ENSRNOG00000037879|protein_coding|| |
sblock9681 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.546 | no | no | 0.26/0.42 | 18/26/0.69 | 0.0 0.0 0.0 0.0 | 0.0 1.3 0.5 0.0 | 1 23 4 1 | 0 0 0 0 | 1 8 1 1 | 0 0 0 0 | 0 8 15 10 | 9 -6 -11 -3 | 5arm 5arm_loop 3arm_loop 3arm_loop | 2 2 2 2 | nd nd nd nd | 0.53 0.38 0.55 0.32 | 6 3 10 2 | 49 | 8 | 0 | 0 |
| reads | miRBase family seed | |||||||||
| seed | ---------CUGUUGU------------------------------------------------- | 42 | novel | |||||||
| seed | -----------------------------AGUGUAA----------------------------- | 4 | novel | |||||||
| seed | -------------------------------------GUGAUAG--------------------- | 1 | novel | |||||||
| seed | -GUGACUC--------------------------------------------------------- | 1 | novel | |||||||
| seed | -------CCCUGUU--------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------CCTGTTGTTTAAATCCTTTCT------------------------------------ | 21 | 3 | 3 | - | 1 | 1 | 2 | 17 | 1 | |
| --------CCTGTTGTTTAAATCCTTTCTAGTGT------------------------------- | 26 | - | - | 1 | - | - | - | 6 | - | |
| --------CCTGTTGTTTAAATCCTTTCTAGTG-------------------------------- | 25 | - | - | - | - | - | 1 | 4 | - | |
| ----------------------------TAGTGTAATGTGATAGGATTTT--------------- | 22 | - | - | - | - | - | - | 3 | - | |
| ------TCCCTGTTGTTTAAATCCTTTCT------------------------------------ | 23 | - | - | - | - | - | - | 1 | - | |
| ----------------------------TAGTGTAATGTGATAGGATT----------------- | 20 | - | - | - | - | - | - | 1 | - | |
| AGTGACTCCCTGTTGTTTA---------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | |
| --------CCTGTTGTTTAAATCCTT--------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | |
| --------CCTGTTGTTTAAATCCTTTCTAG---------------------------------- | 23 | - | - | - | - | - | - | - | 1 | |
| ------------------------------------TGTGATAGGATTTTATGAA---------- | 19 | - | - | - | - | - | - | 1 | - | |
| rat | agtgactcCCTGTTGTTTAAATCCTTTCTAGTGTaatgtgataggattttatgaaattcgttcct | |||||||||
| ***************************************************************** | ||||||||||
| rat | ((..((......((((..(((((((.((...........)).))))))).)))).....))..)) | 0.720 -8.70 | ||||||||
| rat | chromosome:5:25627308:25627372:1 | intergenic |
novel_cloningOK_multiarm_DicerNOK (25 loci)
sblock10081 [novel_cloningOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.238 | no | no | 0.35/0.43 | 19/26/0.80 | 0.2 2.5 0.0 0.0 | 0.0 1.0 0.0 0.0 | 8 2 2 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 9 25 13 0 | 19 -23 9 23 | 5arm 3arm_loop 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.50 0.26 0.33 0.50 | 5 2 2 6 | 15 | 3 | -6 | -1 |
| reads | miRBase family seed | ||||
| seed | ----------CAACAAC--------------------------------------------------------------------------------- | 7 | novel | ||
| seed | -----------AACAACU-------------------------------------------------------------------------------- | 2 | novel | ||
| seed | --------------------------------------------------------------ACCCUCU----------------------------- | 2 | novel | ||
| seed | ----------------------------------------------AGGAUGC--------------------------------------------- | 1 | novel | ||
| seed | ---------UCAACAA---------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------------------ACUAUGU--------------- | 1 | novel | ||
| seed | ---------------------------------------------------GCUUUGC---------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ---------TCAACAACTGTGTGATGTGT--------------------------------------------------------------------- | 20 | - | 1 | 6 | |
| -------------------------------------------------------------TACCCTCTCTGTTGTACTATGTTG------------- | 24 | - | - | 2 | |
| ----------CAACAACTGTGTGATGTGT--------------------------------------------------------------------- | 19 | - | - | 2 | |
| --------TTCAACAACTGTGTGATGTGTAA------------------------------------------------------------------- | 23 | - | - | 1 | |
| ---------------------------------------------TAGGATGCTTTGCTTTTACCCTCTCT--------------------------- | 26 | - | - | 1 | |
| --------------------------------------------------TGCTTTGCTTTTACCCTCTCTGT------------------------- | 23 | - | - | 1 | |
| ---------------------------------------------------------------------------TACTATGTTGCCTACAGAATACA | 23 | 1 | - | - | |
| rat | attcaacttTCAACAACTGTGTGATGTGTaagaaagttagaagcataggatgctttgctttTACCCTCTCTGTTGTACTATGTTGcctacagaataca | ||||
| ************************************************************************************************** | |||||
| rat | ((((......(((((...(((..((.....(((.((.((((((((.((....)).))))))))..)).)))))..)))..)))))......))))... | 0.530 -19.00 | |||
| rat | chromosome:6:122557039:122557136:-1 | intergenic |
sblock10110 [novel_cloningOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.369 | no | no | 0.35/0.55 | 19/25/0.90 | 0.5 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 2 2 11 9 | 0 0 0 0 | 2 1 2 4 | 0 0 0 0 | 15 14 8 1 | 0 -1 9 16 | 5arm 3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.21 0.32 0.43 0.43 | 1 3 4 6 | 30 | 5 | 7 | 6 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------------GGCAGUU--------------------- | 14 | novel | ||||
| seed | ------------------------------------------------------------GGACUCA-------------- | 11 | novel | ||||
| seed | -------------------------------------------AGGGAAA------------------------------- | 2 | novel | ||||
| seed | -------------------------------------------------------------GACUCAA------------- | 1 | novel | ||||
| seed | -----------------UCUUAUU--------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------CUCUUAU---------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T5S1 | |||
| ----------------------------------------------------TGGCAGTTGGACTCAACGTCA-------- | 21 | 1 | - | - | - | 11 | |
| -----------------------------------------------------------TGGACTCAACGTCAATTCCAC- | 21 | 1 | 1 | - | - | 9 | |
| ----------------------------------------------------TGGCAGTTGGACTCAACGTC--------- | 20 | - | - | - | - | 2 | |
| ------------------------------------------CAGGGAAACATGGCAGTTGGACTCA-------------- | 25 | - | - | - | - | 2 | |
| ----------------CTCTTATTCTCAGTTCTCT---------------------------------------------- | 19 | - | - | - | - | 1 | |
| ------------------------------------------------------------GGACTCAACGTCAATTCCAC- | 20 | - | - | - | 1 | - | |
| ---------------TCTCTTATTCTCAGTTCTCT---------------------------------------------- | 20 | - | - | 1 | - | - | |
| rat | cgtggcccaagtcgttctcttattctcagttctcttcctcagcagggaaacaTGGCAGTTGGACTCAACGTCAATTCCACg | ||||||
| ********************************************************************************* | |||||||
| rat | (((((.......((((.(((.(((.(((.((((((........))))))...))).))).)))...))))......))))) | 0.710 -17.12 | |||||
| rat | chromosome:6:122566503:122566583:-1 | intergenic |
sblock10985 [novel_cloningOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.588 | no | no | 0.50/0.67 | 18/23/0.85 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 | 24 1 2 1 1 | 0 0 0 0 0 | 4 1 1 1 1 | 0 0 0 0 0 | 14 23 33 35 0 | 8 1 -11 -9 23 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.45 0.22 0.50 0.50 0.45 | 4 2 10 8 4 | 39 | 5 | 0 | -18 |
| reads | miRBase family seed | ||||||
| seed | ---------------GAGCUCU---------------------------------------------------------------------------- | 30 | novel | ||||
| seed | -------------CUGAGCU------------------------------------------------------------------------------ | 3 | novel | ||||
| seed | ----------------------------------UCCACAC--------------------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------UCAAGAC----------------------------------------------- | 1 | novel | ||||
| seed | -----------CUCUGAG-------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------------------------CAAGCAG--------------- | 1 | novel | ||||
| seed | ------------------------GCCACGC------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S2 | T3S1 | T4S1 | T5S1 | |||
| --------------TGAGCTCTTTGCCACGCGCT---------------------------------------------------------------- | 20 | 3 | 1 | - | 1 | 24 | |
| ------------TCTGAGCTCTTTGCCACGC------------------------------------------------------------------- | 19 | - | - | - | - | 3 | |
| ---------------------------------TTCCACACCCTTCAAGACTG--------------------------------------------- | 20 | - | - | - | - | 2 | |
| ---------------------------------------------------------------------------GCAAGCAGCAGGGCCTCTTACAG | 23 | - | - | - | - | 1 | |
| ----------CCTCTGAGCTCTTTGCCAC--------------------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| -------------------------------------------TTCAAGACTGGTGCCTGGAG----------------------------------- | 20 | - | - | - | - | 1 | |
| --------------TGAGCTCTTTGCCACGCGC----------------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| -----------------------TGCCACGCGCTTCCACAC--------------------------------------------------------- | 18 | - | - | 1 | - | - | |
| rat | tctgtggccacctcTGAGCTCTTTGCCACGCGCTtccacacccttcaagactggtgcctggagcctggagccccagcaagcagcagggcctcttacag | ||||||
| ************************************************************************************************** | |||||||
| rat | .((((((((....(((.(((....((..((.((.((((((((..........))))..)))))).))..))...)))...)))...))))....)))) | 0.760 -28.00 | |||||
| rat | chromosome:7:116621453:116621550:-1 | intergenic |
sblock11393 [novel_cloningOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.025 | no | no | 0.39/0.53 | 19/24/0.77 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 2 1 6 | 0 0 0 0 | 1 2 1 2 | 0 0 0 0 | 0 6 36 20 | 45 39 8 11 | 5arm 5arm 5arm 3arm | 1 1 1 1 | nd nd nd nd | 0.53 0.37 0.40 0.25 | 7 3 5 2 | 13 | 2 | 4 | 7 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------------GUUCAAA-------------------------------- | 6 | novel | |
| seed | -------AAGGAUG--------------------------------------------------------------------------------------------------------- | 2 | novel | |
| seed | -----------------------------------------------------------------------CCUGCCA----------------------------------------- | 1 | novel | |
| seed | -------------------------------------GUUAUGA--------------------------------------------------------------------------- | 1 | novel | |
| seed | -GAUUAUA--------------------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------------------GCCAAUG-------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------------AAUGUUC----------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------------------------------------------------------------------TGTTCAAATGAGGGATGTGA-------------------- | 20 | - | 6 | |
| ------TAAGGATGCCCAGTGCTCT---------------------------------------------------------------------------------------------- | 19 | 1 | 1 | |
| TGATTATAAGGATGCCCAG---------------------------------------------------------------------------------------------------- | 19 | - | 1 | |
| ----------------------------------------------------------------------GCCTGCCAATGTTCAAATGAGGGA------------------------- | 24 | 1 | - | |
| ----------------------------------------------------------------------------CAATGTTCAAATGAGGGATGTGA-------------------- | 23 | - | 1 | |
| -------------------------------------------------------------------------TGCCAATGTTCAAATGAGGGA------------------------- | 21 | - | 1 | |
| ------------------------------------TGTTATGATAGGAGCTTGGA--------------------------------------------------------------- | 20 | - | 1 | |
| rat | tgattataaggatgcccagtgctctacaagttgctctgttatgataggagcttggagagggtaccttggtgcctgccaaTGTTCAAATGAGGGATGTGAtcttgggccatggagctctt | |||
| *********************************************************************************************************************** | ||||
| rat | ........((((.(((((..(((...(((((((((((.((((.....((((((((...((((((....)))))).)))).))))..)))).))).)))).)))))))..))).)))))) | 0.990 -40.20 | ||
| rat | chromosome:7:112756097:112756215:1 | intergenic |
sblock1338 [novel_cloningOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.287 | no | no | 0.35/0.58 | 19/25/0.83 | 0.0 4.0 1.0 0.0 0.0 | 0.0 1.3 1.2 0.0 0.0 | 1 3 4 23 1 | 0 0 0 0 0 | 1 2 2 6 1 | 0 0 0 0 0 | 9 37 39 26 6 | 20 -9 -5 11 33 | 5arm 5arm_loop_3arm 3arm 3arm 3arm | 1 4 4 4 4 | nd nd nd nd nd | 0.38 0.47 0.58 0.67 0.16 | 6 6 8 7 2 | 41 | 7 | 0 | -12 |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------------------------------------------GACAAAA--------------------------------------- | 31 | novel | ||||||
| seed | --------------------------------------------CACAACC------------------------------------------------------------------ | 2 | novel | ||||||
| seed | --------------------------------------------------------CCUCAGC------------------------------------------------------ | 2 | novel | ||||||
| seed | ---------------------------------------------------------------------AUGACAA----------------------------------------- | 1 | novel | ||||||
| seed | --------------------------------------ACCACUC------------------------------------------------------------------------ | 1 | novel | ||||||
| seed | -----------------------------------------------------------CAGCUCU--------------------------------------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------UCCUCAG------------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------------------------------------------------AAGUCCA----------------- | 1 | novel | ||||||
| seed | ----------CUGACAU---------------------------------------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------------TGACAAAATGTAACCCTACTC-------------------------- | 21 | - | 1 | 1 | 1 | - | 23 | - | |
| ----------------------------------------------------------------------TGACAAAATGTAACCCTACT--------------------------- | 20 | 1 | - | - | - | - | 2 | - | |
| -------------------------------------------TCACAACCTGTCTCCTCAG------------------------------------------------------- | 19 | - | - | - | - | - | 1 | 1 | |
| -------------------------------------------------------TCCTCAGCTCTTGTATGACAAAA--------------------------------------- | 23 | - | - | - | - | - | 2 | - | |
| ----------------------------------------------------------------------TGACAAAATGTAACCCTAC---------------------------- | 19 | - | - | - | - | - | 2 | - | |
| ---------TCTGACATCCCACAGTGGGCTGGA------------------------------------------------------------------------------------ | 24 | - | 1 | - | - | - | - | - | |
| ----------------------------------------------------------TCAGCTCTTGTATGACAAA---------------------------------------- | 19 | - | 1 | - | - | - | - | - | |
| --------------------------------------------------------------------TATGACAAAATGTAACCCTACTCCT------------------------ | 25 | - | - | - | - | 1 | - | - | |
| ------------------------------------------------------CTCCTCAGCTCTTGTATGAC------------------------------------------- | 20 | - | - | - | - | - | 1 | - | |
| -------------------------------------TACCACTCACAACCTGTCTCCTC--------------------------------------------------------- | 23 | - | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------------------------------TAAGTCCATATGTTGGGGG------ | 19 | - | - | - | - | - | 1 | - | |
| rat | gctgcctcttctgacatcccacagtgggctggatacataccactcacaacctgtctcctcagctcttgtaTGACAAAATGTAACCCTACTCctaagtccatatgttgggggggttgt | ||||||||
| ********************************************************************************************************************* | |||||||||
| rat | ((.(((.((((..((((......(((((((((.(((((.......((((.(((......)))...))))........))))).)).........)))))))))))..))))))).)) | 0.420 -27.56 | |||||||
| rat | chromosome:1:47968811:47968927:1 | intergenic |
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