other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_nonpairedHIGH (25 loci)
sblock8778 [novel_lenNOK_cloningOK_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.429 | no | no | 0.37/0.58 | 18/26/0.33 | 0.0 0.0 0.0 0.0 1.0 | 0.0 0.0 0.0 0.0 0.7 | 2 1 1 4 9 | 0 0 0 0 0 | 1 1 1 3 2 | 0 0 0 0 0 | 31 44 39 14 0 | -4 -16 -2 30 41 | 5arm_loop 5arm_loop_3arm 3arm_loop 3arm 3arm | 1 2 3 4 4 | nd nd nd nd nd | 0.37 0.50 0.31 0.37 0.60 | 5 8 3 4 9 | 18 | 4 | 0 | -16 |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------------------------------------------------CACAGGA-------------- | 6 | novel | |||
| seed | -------------------------------------------------------------------------------------GGGUAGG------------------------- | 4 | novel | |||
| seed | ---------------------------------------------------------------------------------------------------AGGAUGG----------- | 3 | novel | |||
| seed | --------------------------------GACAUGC------------------------------------------------------------------------------ | 2 | novel | |||
| seed | ---------------------------------------------UGUUUUU----------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------AAGGUGU--------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------------------------------------------GACCUCA------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S2 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------------------------------------TCACAGGATGGCCACATTGA-- | 20 | - | - | 6 | - | |
| ------------------------------------------------------------------------------------TGGGTAGGACCTCACAGGA-------------- | 19 | 1 | - | 2 | 1 | |
| --------------------------------------------------------------------------------------------------CAGGATGGCCACATTGAAG | 19 | - | - | 3 | - | |
| -------------------------------TGACATGCCACATTTGTTT------------------------------------------------------------------- | 19 | - | - | 2 | - | |
| ------------------------------------------------------------------------------------------GGACCTCACAGGATGGCCACATTGA-- | 25 | - | 1 | - | - | |
| ----------------------------------------------------CAAGGTGTCGTAAAGGTTGGGTGAGG--------------------------------------- | 26 | - | - | 1 | - | |
| --------------------------------------------TTGTTTTTCAAGGTGTCG------------------------------------------------------- | 18 | - | 1 | - | - | |
| rat | gctgaactgtttctgatccatgaggatgcccTGACATGCCACATTTGTTTttcaaggtgtcgtaaaggttgggtgaggcctgtgTGGGTAGGACCTCACAGGATGGCCACATTGAAG | |||||
| ********************************************************************************************************************* | ||||||
| rat | ((((..((((.(((.((((((((((.(((((.(((.(((.((((((........)))))).)))...))))))))...))).))))))).)))....))))..)))).......... | 0.540 -33.00 | ||||
| rat | chromosome:4:165135769:165135885:-1 | intergenic |
sblock8793 [novel_lenNOK_cloningOK_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.228 | no | no | 0.38/0.50 | 18/26/0.47 | 0.5 0.7 0.0 0.0 0.9 | 0.0 1.4 0.0 0.0 0.0 | 2 13 1 1 7 | 0 0 0 0 0 | 2 6 1 1 5 | 0 0 0 0 0 | 0 5 31 6 1 | 13 1 -23 8 12 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 1 2 2 2 2 | nd nd nd nd nd | 0.50 0.31 0.42 0.47 0.60 | 4 3 4 4 8 | 30 | 9 | 13 | 1 |
| reads | miRBase family seed | ||||||||||
| seed | --------GGAGCUG----------------------------------------------------- | 8 | novel | ||||||||
| seed | --------------------------------------------------CCCAAUC----------- | 8 | novel | ||||||||
| seed | ------------------------------------------------CACCCAA------------- | 5 | novel | ||||||||
| seed | ------AAGGAGC------------------------------------------------------- | 3 | novel | ||||||||
| seed | -UCAAAAA------------------------------------------------------------ | 1 | novel | ||||||||
| seed | --CAAAAAG----------------------------------------------------------- | 1 | novel | ||||||||
| seed | ----------AGCUGUG--------------------------------------------------- | 1 | novel | ||||||||
| seed | ---------GAGCUGU---------------------------------------------------- | 1 | novel | ||||||||
| seed | --------------------------------------------UGAACAC----------------- | 1 | novel | ||||||||
| seed | --------------------------------GGUUAGG----------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| -------AGGAGCTGTGGACATTTAGTCTCT------------------------------------- | 24 | - | 1 | - | 1 | 2 | 3 | - | - | - | |
| -----------------------------------------------ACACCCAATCCTTAGCATTC- | 20 | - | - | 4 | - | 1 | - | - | - | - | |
| -------------------------------------------------ACCCAATCCTTAGCATTC- | 18 | - | 1 | 3 | - | - | 1 | - | - | - | |
| -------------------------------------------------ACCCAATCCTTAGCATTCG | 19 | 1 | - | 1 | - | 1 | - | - | - | - | |
| -----AAAGGAGCTGTGGACATTTAGTCTCT------------------------------------- | 26 | - | - | - | - | - | - | 2 | - | - | |
| -------------------------------------------ATGAACACCCAATCCTTAG------ | 19 | - | - | - | - | - | - | 1 | - | - | |
| ATCAAAAAGGAGCTGTGGA------------------------------------------------- | 19 | - | - | - | - | 1 | - | - | - | - | |
| -------------------------------AGGTTAGGATTTATGAACACCCAA------------- | 24 | - | - | 1 | - | - | - | - | - | - | |
| -TCAAAAAGGAGCTGTGGA------------------------------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | |
| --------GGAGCTGTGGACATTTAG------------------------------------------ | 18 | - | - | - | - | - | 1 | - | - | - | |
| ---------GAGCTGTGGACATTTAGTC---------------------------------------- | 19 | - | - | - | - | - | 1 | - | - | - | |
| -------AGGAGCTGTGGACATTTAGTC---------------------------------------- | 21 | - | - | - | - | 1 | - | - | - | - | |
| -----AAAGGAGCTGTGGACATTT-------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | |
| rat | atcaaAAAGGAGCTGTGGACATTTAGTCTCTaggttaggatttatgaACACCCAATCCTTAGCATTCg | ||||||||||
| ******************************************************************** | |||||||||||
| rat | ......(((((...(((..(((..((((.(((...))))))).)))..)))....)))))........ | 0.930 -13.30 | |||||||||
| rat | chromosome:4:173852242:173852309:-1 | intergenic |
sblock9088 [novel_lenNOK_cloningOK_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.155 | no | no | 0.41/0.47 | 19/22/0.31 | 0.2 0.0 0.0 0.0 0.0 | 0.5 1.0 0.0 0.0 0.0 | 4 2 1 6 1 | 0 0 0 0 0 | 2 1 1 3 1 | 0 0 0 0 0 | 11 17 25 20 13 | 9 3 -3 5 12 | 5arm 5arm 3arm_loop 3arm 3arm | 1 1 1 2 2 | nd nd nd nd nd | 0.50 0.32 0.32 0.47 0.63 | 7 2 2 6 8 | 16 | 5 | -4 | -4 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------------UCACCAU------------------------------- | 8 | novel | ||||
| seed | -------------CCCCUAC----------------------------------------------------------------------- | 3 | novel | ||||
| seed | ------------------ACUUAAA------------------------------------------------------------------ | 2 | novel | ||||
| seed | ------------UCCCCUA------------------------------------------------------------------------ | 1 | novel | ||||
| seed | ---------------------------------------------AUCUUGG--------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------------------CACUGAC------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------ATCACCATCACTGACACTG-------------------- | 19 | - | - | 1 | 6 | 1 | |
| ------------TCCCCTACTTAAAGATGGTG----------------------------------------------------------- | 20 | - | - | - | 3 | - | |
| -----------------------------------------------------------TCACTGACACTGCATACCT------------- | 19 | 1 | - | - | - | - | |
| -----------TTCCCCTACTTAAAGATGG------------------------------------------------------------- | 19 | - | 1 | - | - | - | |
| -----------------TACTTAAAGATGGTGCCCA------------------------------------------------------- | 19 | - | - | - | 1 | - | |
| --------------------------------------------TATCTTGGATCACCATCACTGA------------------------- | 22 | - | 1 | - | - | - | |
| -----------------TACTTAAAGATGGTGCCCACA----------------------------------------------------- | 21 | - | - | - | 1 | - | |
| rat | ttgagctgaggtTCCCCTACTTAAAGATGGTGcccacatagtcttatcttggATCACCATCACTGACACTGcatacctgatcagtcttgac | ||||||
| ******************************************************************************************* | |||||||
| rat | ((((((((((((........(((..(((((((.(((...((......)))))..)))))))..)))........)))...)))).))))). | 0.790 -19.49 | |||||
| rat | chromosome:4:164256646:164256736:1 | intergenic |
sblock9847 [novel_lenNOK_cloningOK_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.134 | no | no | 0.37/0.57 | 18/28/0.44 | 0.7 0.0 | 3.0 0.0 | 3 15 | 0 0 | 1 6 | 0 0 | 6 11 | 10 3 | 5arm 3arm | 1 1 | nd nd | 0.33 0.37 | 3 3 | 48 | 6 | -7 | -3 |
| reads | miRBase family seed | |||||||
| seed | -------------------------------------------------GCGUCGA------------------------------ | 23 | novel | |||||
| seed | -----------------------------------------------GAGCGUC-------------------------------- | 7 | novel | |||||
| seed | ------------------------------------------UUGCUGA------------------------------------- | 3 | novel | |||||
| seed | -------------------------------------CAGAUUU------------------------------------------ | 3 | novel | |||||
| seed | -----------------------------------------------------CGACCAU-------------------------- | 3 | novel | |||||
| seed | --------------------------------------AGAUUUG----------------------------------------- | 3 | novel | |||||
| seed | --------GAGAAUG----------------------------------------------------------------------- | 2 | novel | |||||
| seed | -------UGAGAAU------------------------------------------------------------------------ | 1 | novel | |||||
| seed | ----------------------------------------AUUUGCU--------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------GCUGAGC----------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------AGCGUCG------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T2S2 | T4S1 | T4S2 | T5S1 | |||
| ------------------------------------------------AGCGTCGACCATAACCCTTGGCATCCT----------- | 27 | 1 | - | - | - | 1 | 15 | |
| ----------------------------------------------TGAGCGTCGACCATAACCCTTGG----------------- | 23 | - | - | - | 1 | - | 3 | |
| ----------------------------------------------------TCGACCATAACCCTTGGCA--------------- | 19 | - | 1 | - | - | - | 2 | |
| ------------------------------------------------AGCGTCGACCATAACCCTTG------------------ | 20 | - | - | - | - | - | 3 | |
| -------------------------------------CAGATTTGCTGAGCGTCGAC----------------------------- | 20 | - | - | - | - | - | 3 | |
| ------------------------------------CCAGATTTGCTGAGCGTCGAC----------------------------- | 21 | - | - | - | - | - | 3 | |
| -----------------------------------------TTTGCTGAGCGTCGACCATA------------------------- | 20 | - | - | - | - | - | 2 | |
| ------------------------------------------------AGCGTCGACCATAACCCTT------------------- | 19 | 1 | - | - | - | 1 | - | |
| ----------------------------------------------TGAGCGTCGACCATAACCCTTG------------------ | 22 | - | - | - | - | - | 2 | |
| -----------------------------------------------GAGCGTCGACCATAACCCTTGGCATCCT----------- | 28 | - | - | 1 | - | - | - | |
| -------TGAGAATGAAAAAGGGTC------------------------------------------------------------- | 18 | - | - | - | - | - | 1 | |
| ----------------------------------------------TGAGCGTCGACCATAACC---------------------- | 18 | - | - | - | - | - | 1 | |
| ------------------------------------------------AGCGTCGACCATAACCCTTGGCA--------------- | 23 | - | - | - | - | - | 1 | |
| -----------------------------------------TTTGCTGAGCGTCGACCATAACCCT-------------------- | 25 | 1 | - | - | - | - | - | |
| -------------------------------------------TGCTGAGCGTCGACCATAAC----------------------- | 20 | - | - | - | - | - | 1 | |
| -------TGAGAATGAAAAAGGGTCA------------------------------------------------------------ | 19 | - | - | - | - | - | 1 | |
| ---------------------------------------GATTTGCTGAGCGTCGACCA--------------------------- | 20 | - | - | - | - | - | 1 | |
| ------TTGAGAATGAAAAAGGGTCAGGGA-------------------------------------------------------- | 24 | - | - | - | - | - | 1 | |
| rat | cgacccttgagaatgaaaaagggtcagggaaagaagccagatttgctgAGCGTCGACCATAACCCTTGGCATCCTacacatgttgc | |||||||
| ************************************************************************************** | ||||||||
| rat | ((((...((((.(((...((((((...((...((.(((((.....))).)).))..))...))))))..))).)).))...)))). | 0.720 -23.10 | ||||||
| rat | chromosome:5:154401473:154401558:1 | intergenic |
sblock2166 [novel_lenNOK_cloningOK_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.058 | no | no | 0.17/0.50 | 18/20/0.10 | 0.0 0.7 0.0 1.0 | 0.0 1.0 0.0 0.0 | 1 6 1 2 | 0 0 0 0 | 1 2 1 2 | 0 0 0 0 | 14 18 43 6 | 22 15 -7 28 | 5arm 5arm 3arm_loop 3arm | 1 2 6 6 | nd nd nd nd | 0.42 0.44 0.61 0.40 | 4 7 6 3 | 10 | 4 | 0 | 9 |
| reads | miRBase family seed | |||||
| seed | --------------------UCUGGGU----------------------------------------------------------------------------------------- | 3 | novel | |||
| seed | -------------------CUCUGGG------------------------------------------------------------------------------------------ | 2 | miR-326/330 | |||
| seed | ---------------------------------------------------------------------------------------------AGCCUAG---------------- | 1 | novel | |||
| seed | ----------------------UGGGUAA--------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------UUUGCUC---------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------------------------------------------CCAGCCU------------------ | 1 | novel | |||
| seed | --------------------------------------------------------UUUUCUA----------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T3S2 | T4S2 | T5S2 | |||
| -------------------CTCTGGGTAAGTCTTCTTC------------------------------------------------------------------------------ | 19 | - | 3 | - | - | |
| ------------------GCTCTGGGTAAGTCTTCT-------------------------------------------------------------------------------- | 18 | - | 2 | - | - | |
| ---------------------CTGGGTAAGTCTTCTTCGT---------------------------------------------------------------------------- | 19 | - | - | 1 | - | |
| ------------------------------------------------------------------------------------------ACCAGCCTAGCTATAACTGC------ | 20 | - | 1 | - | - | |
| --------------CTTTGCTCTGGGTAAGTCT----------------------------------------------------------------------------------- | 19 | - | 1 | - | - | |
| --------------------------------------------------------------------------------------------CAGCCTAGCTATAACTGC------ | 18 | - | - | - | 1 | |
| -------------------------------------------------------TTTTTCTAACCTTTTTTT------------------------------------------- | 18 | 1 | - | - | - | |
| rat | tcggtctcattttcCTTTGCTCTGGGTAAGTCTTCTTCGTgggctgtgattggttTTTTTCTAACCTTTTTTTccctcccctctctcttaACCAGCCTAGCTATAACTGCggctgg | |||||
| ******************************************************************************************************************** | ||||||
| rat | .(((((.((.((......(((((((.((((..........(((....((..((((.......))))..))...)))..........)))).))))...)))...)).)).))))). | 0.470 -24.05 | ||||
| rat | chromosome:1:211390613:211390728:1 | intergenic ## {Repeats: dust 211390666 211390684 0 class=dust} |
novel_lenNOK_multiarm_DicerNOK_shortStem_nonpairedHIGH (25 loci)
sblock10159 [novel_lenNOK_multiarm_DicerNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.048 | no | no | 0.33/0.50 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 8 1 | 0 0 | 5 1 | 0 0 | 2 18 | 10 -3 | 5arm 3arm_loop | 1 1 | nd nd | 0.33 0.33 | 3 2 | 9 | 6 | -14 | -14 |
| reads | miRBase family seed | |||||||
| seed | ---AGACUUA-------------------------------------------------------------- | 8 | novel | |||||
| seed | -------------------------------------AAAGGUG---------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --AAGACTTAAAACCTTGCA---------------------------------------------------- | 18 | - | 1 | 1 | 3 | 1 | 2 | |
| ------------------------------------TAAAGGTGCTCTCCAGCA------------------ | 18 | 1 | - | - | - | - | - | |
| rat | acAAGACTTAAAACCTTGCAgacagtacctgattaaTAAAGGTGCTCTCCAGCAtactcttttagccctgta | |||||||
| ************************************************************************ | ||||||||
| rat | ((.((..((((((...(((.((.(((((((.........))))))).))..))).....))))))..)))). | 0.980 -14.20 | ||||||
| rat | chromosome:6:128460898:128460969:-1 | intergenic |
sblock10350 [novel_lenNOK_multiarm_DicerNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.125 | no | no | 0.56/0.61 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 4 | 0 0 | 1 4 | 0 0 | 8 0 | 13 24 | 5arm 3arm | 3 3 | nd nd | 0.39 0.59 | 2 6 | 5 | 4 | 11 | 5 |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------------------------------------------GGCUCAG---------- | 4 | miR-24 | |||
| seed | ---------CAGCUCC----------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T3S1 | T4S2 | T5S1 | |||
| ---------------------------------------------------------------------------------TGGCTCAGGGACACAGAA | 18 | 1 | 1 | 1 | 1 | |
| --------CCAGCTCCTTCCCTTCCT------------------------------------------------------------------------- | 18 | 1 | - | - | - | |
| rat | gttcaaaaCCAGCTCCTTCCCTTCCTggtagctttcagcccctcccaaaactgtgttgctgactgagtactgggaagtgagTGGCTCAGGGACACAGAA | |||||
| *************************************************************************************************** | ||||||
| rat | ((((......(((..(((..(((((..((.(((((((((..................)))))..))))))..))))).)))..)))...))))...... | 0.990 -28.77 | ||||
| rat | chromosome:6:108631547:108631645:1 | intergenic |
sblock10865 [novel_lenNOK_multiarm_DicerNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.239 | no | no | 0.52/0.53 | 19/25/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 1 3 | 7 14 | 5arm 3arm | 1 1 | nd nd | 0.44 0.37 | 4 3 | 2 | 2 | 5 | -1 |
| reads | miRBase family seed | |||
| seed | --GACCUUG---------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------GACAAGA-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------------TGACAAGATCCCCGCAGTT--- | 19 | - | 1 | |
| -TGACCTTGGATGTCCCTTCAACTCC----------------------------------------------- | 25 | 1 | - | |
| rat | cTGACCTTGGATGTCCCTTCAACTCCtgcttgcaaaggcatttcctgctgtTGACAAGATCCCCGCAGTTagc | |||
| ************************************************************************* | ||||
| rat | (((((..(((..(((...(((((....((.(((....)))......)).)))))...)))..)))..))))). | 0.610 -16.10 | ||
| rat | chromosome:7:96028412:96028484:-1 | intergenic |
sblock11061 [novel_lenNOK_multiarm_DicerNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.143 | no | no | 0.53/0.61 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 2 3 | 0 0 | 1 1 | 0 0 | 2 4 | 16 13 | 5arm 3arm | 1 1 | nd nd | 0.39 0.47 | 3 4 | 5 | 2 | -1 | -4 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------UUAAGGU--------------- | 3 | novel | |
| seed | ---CAAGGCG------------------------------------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S2 | |||
| ------------------------------------------------------TTTAAGGTCAGAGCCAGCC---- | 19 | - | 3 | |
| --CCAAGGCGGCCCAGAAAA--------------------------------------------------------- | 18 | 2 | - | |
| rat | gcCCAAGGCGGCCCAGAAAAaggcggagctgagaggaggaaccaggtaaatgccTTTAAGGTCAGAGCCAGCCaggt | |||
| ***************************************************************************** | ||||
| --------------------------------------------------------------------------------------- | ENSRNOT00000037874 ENSRNOG00000022807 RGD1561028 | |||
| rat | (((...((((((...((.(((((((..(((....((.....)).)))...)))))))....))...))).))).))) | 0.680 -21.30 | ||
| rat | chromosome:7:136093713:136093789:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000037874|ENSRNOG00000022807 ## ENSRNOG00000022807|protein_coding|RGD1561028|Similar to MGC47262 protein. [Source:UniProtKB/TrEMBL;Acc:Q2M1K5] |
sblock11466 [novel_lenNOK_multiarm_DicerNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.398 | no | no | 0.47/0.83 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 0 | 14 18 | 5arm 3arm | 1 1 | nd nd | 0.33 0.33 | 3 2 | 2 | 2 | 4 | 4 |
| reads | miRBase family seed | |||
| seed | -----GGGGCCG------------------------------------------------------------------ | 1 | novel | |
| seed | ------------------------------------------------------------AAGGAAG----------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| -----------------------------------------------------------AAAGGAAGGCTGCAGAGTT | 19 | - | 1 | |
| ----TGGGGCCGCCCTGGGGTG-------------------------------------------------------- | 18 | 1 | - | |
| rat | gcgtTGGGGCCGCCCTGGGGTGcagtctgggtcctagtctgtgcagcccagcgtcgcacAAAGGAAGGCTGCAGAGTT | |||
| ****************************************************************************** | ||||
| rat | ((.(((.((((..(((...((((...((((((..((.....))..))))))....))))..)))..)))).))).)). | 0.860 -29.30 | ||
| rat | chromosome:7:123641534:123641611:1 | intergenic |
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