other hairpins
novel_lenNOK_multiarm_DicerNOK_shortStem_nonpairedHIGH (25 loci)
novel_multiarm_DicerNOK_Multihit (25 loci)
sblock106 [novel_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.440 | no | no | 0.35/0.42 | 19/20/0.75 | 0.0 0.0 | 0.0 0.0 | 1 3 | 0 0 | 1 2 | 0 0 | 23 24 | 6 13 | 5arm 3arm | 22 22 | nd nd | 0.26 0.50 | 2 9 | 4 | 2 | 8 | 2 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------GAACUAG------------------------------------ | 3 | novel | |
| seed | ------------------------CAGUUGC------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------TGAACTAGATTTGCATGATG------------------------ | 20 | 1 | 2 | |
| -----------------------TCAGTTGCTCATAGGGATT------------------------------------------------------------------- | 19 | - | 1 | |
| rat | tgcaagttctgtcctgagtgtgaTCAGTTGCTCATAGGGATTtgggaatgcttttctgtctctctTGAACTAGATTTGCATGATGgcgtccatgactgtcagcctgtat | |||
| ************************************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043239 ENSRNOG00000033820 | |||
| ----------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | |||
| rat | ((((.(((..(((.((..(((.((((..((((((.(((((..((((((....))))))..)))))))).........))))))).)))..)).)))....))).)))). | 0.480 -26.50 | ||
| rat | chromosome:1:47792094:47792202:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## Same_strand|Intronic_coding|ENSRNOT00000043239|ENSRNOG00000033820 ## ENSRNOG00000033820|protein_coding|| ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
sblock12391 [novel_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.467 | no | no | 0.36/0.55 | 20/23/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 2 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 11 27 18 | 24 5 16 | 5arm 5arm 3arm | 48 48 153 | nd nd nd | 0.30 0.57 0.36 | 3 6 3 | 4 | 2 | -4 | -1 |
| reads | miRBase family seed | |||
| seed | ------------ACCAGGU--------------------------------------------------------------------------------------------------- | 2 | novel | |
| seed | ----------------------------UGACUUC----------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------------------UGCUCUC-------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T2S1 | |||
| -----------GACCAGGTTGTCTCCTGTGA--------------------------------------------------------------------------------------- | 20 | - | 2 | |
| ------------------------------------------------------------------------------TTGCTCTCAATGACAACTTTGT------------------ | 22 | 1 | - | |
| ---------------------------GTGACTTCAACAGCAACTCCCAC-------------------------------------------------------------------- | 23 | 1 | - | |
| rat | gctacactgagGACCAGGTTGTCTCCTGTGACTTCAACAGCAACTCCCACtcttccacctttgatgctggggctggcaTTGCTCTCAATGACAACTTTGTaaagctcatttcctggta | |||
| ********************************************************************************************************************** | ||||
| rat | ((((...((((.((.((((((((...((.((......((((....((((....((.......))...)))))))).......)).))..)))))))).))....)))).....)))). | 0.450 -24.62 | ||
| rat | chromosome:9:18212225:18212342:1 | intergenic |
sblock1247 [novel_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.440 | no | no | 0.35/0.42 | 19/20/0.75 | 0.0 0.0 | 0.0 0.0 | 1 3 | 0 0 | 1 2 | 0 0 | 23 24 | 6 13 | 5arm 3arm | 22 22 | nd nd | 0.26 0.50 | 2 9 | 4 | 2 | 8 | 2 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------GAACUAG------------------------------------ | 3 | novel | |
| seed | ------------------------CAGUUGC------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------TGAACTAGATTTGCATGATG------------------------ | 20 | 1 | 2 | |
| -----------------------TCAGTTGCTCATAGGGATT------------------------------------------------------------------- | 19 | - | 1 | |
| rat | tgcaagttctgtcctgagtgtgaTCAGTTGCTCATAGGGATTtgggaatgcttttctgtctctctTGAACTAGATTTGCATGATGgcgtccatgactgtcagcctgtat | |||
| ************************************************************************************************************* | ||||
| rat | ((((.(((..(((.((..(((.((((..((((((.(((((..((((((....))))))..)))))))).........))))))).)))..)).)))....))).)))). | 0.480 -26.50 | ||
| rat | chromosome:1:47739658:47739766:1 | intergenic |
sblock136 [novel_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.274 | no | no | 0.35/0.42 | 19/20/0.75 | 0.0 0.0 | 0.0 0.0 | 1 3 | 0 0 | 1 2 | 0 0 | 23 24 | 6 13 | 5arm 3arm | 22 22 | nd nd | 0.26 0.50 | 2 9 | 4 | 2 | 8 | 2 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------GAACUAG------------------------------------ | 3 | novel | |
| seed | ------------------------CAGUUGC------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------TGAACTAGATTTGCATGATG------------------------ | 20 | 1 | 2 | |
| -----------------------TCAGTTGCTCATAGGGATT------------------------------------------------------------------- | 19 | - | 1 | |
| rat | tgcaagttctgtcctgagtgtgaTCAGTTGCTCATAGGGATTtgggaatgcttttctgtctctctTGAACTAGATTTGCATGATGgcatccatgactgtcagcctgtat | |||
| ************************************************************************************************************* | ||||
| rat | ((((.(((..(((.((..(((.((((..((((((.(((((..((((((....))))))..)))))))).........))))))).)))..)).)))....))).)))). | 0.770 -27.20 | ||
| rat | chromosome:1:48342676:48342784:-1 | intergenic |
sblock139 [novel_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.274 | no | no | 0.35/0.42 | 19/20/0.75 | 0.0 0.0 | 0.0 0.0 | 1 3 | 0 0 | 1 2 | 0 0 | 23 24 | 6 13 | 5arm 3arm | 22 22 | nd nd | 0.26 0.50 | 2 9 | 4 | 2 | 8 | 2 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------GAACUAG------------------------------------ | 3 | novel | |
| seed | ------------------------CAGUUGC------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------TGAACTAGATTTGCATGATG------------------------ | 20 | 1 | 2 | |
| -----------------------TCAGTTGCTCATAGGGATT------------------------------------------------------------------- | 19 | - | 1 | |
| rat | tgcaagttctgtcctgagtgtgaTCAGTTGCTCATAGGGATTtgggaatgcttttctgtctctctTGAACTAGATTTGCATGATGgcatccatgactgtcagcctgtat | |||
| ************************************************************************************************************* | ||||
| rat | ((((.(((..(((.((..(((.((((..((((((.(((((..((((((....))))))..)))))))).........))))))).)))..)).)))....))).)))). | 0.770 -27.20 | ||
| rat | chromosome:1:48344532:48344640:-1 | intergenic |
sblock3514 [novel_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.153 | no | no | 0.50/0.62 | 19/22/0.75 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 14 19 13 3 | 20 8 13 22 | 5arm 3arm 3arm 3arm | 8 18 18 18 | nd nd nd nd | 0.41 0.26 0.15 0.29 | 3 2 2 3 | 4 | 2 | -9 | -12 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------CUCUCUG------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------UGAUUCU------------------------------ | 1 | novel | |
| seed | ---------------UGCUCAA------------------------------------------------------------------------------------ | 1 | novel | |
| seed | -----------------------------------------------------------------------------------CUGCUGA---------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S2 | |||
| --------------------------------------------------------------------CTGATTCTCTCTGGACTGC------------------- | 19 | 1 | - | |
| ----------------------------------------------------------------------------------ACTGCTGAGTGCCCCAGTGTC--- | 21 | 1 | - | |
| --------------CTGCTCAACTCAGTCTTCCACT---------------------------------------------------------------------- | 22 | - | 1 | |
| -------------------------------------------------------------------------TCTCTCTGGACTGCTGAGTG------------- | 20 | - | 1 | |
| rat | aggtggagatggtcCTGCTCAACTCAGTCTTCCACTtgagaatgtctgagtgtgtgtttttatttaccCTGATTCTCTCTGGACTGCTGAGTGCCCCAGTGTCcct | |||
| ********************************************************************************************************** | ||||
| rat | (((.((...(((....((...(((((((..((((...((((..(((...(((.(((....))).)))...)))..))))))))..))))))))).)))...))))) | 0.970 -28.80 | ||
| rat | chromosome:12:18579002:18579107:1 | intergenic |
sblock3868 [novel_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.034 | no | no | 0.64/0.74 | 22/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 12 21 | 24 7 | 5arm 3arm | 3 88 | nd nd | 0.41 0.13 | 6 1 | 2 | 2 | -19 | -12 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------AGGCUGG------------------------------------ | 1 | novel | |
| seed | -------------CCUGCCU--------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ------------TCCTGCCTGCCCTGTGTCGAAG------------------------------------------------------------------------------- | 22 | - | 1 | |
| ---------------------------------------------------------------------CAGGCTGGGGCGCCTGGTCCACA--------------------- | 23 | 1 | - | |
| rat | agctggtggtttTCCTGCCTGCCCTGTGTCGAAGgatggggtgccctactgcatcatcaagggaaaggcCAGGCTGGGGCGCCTGGTCCACAggaagacaggcaccactgttg | |||
| ***************************************************************************************************************** | ||||
| --------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000060634 ENSRNOG00000005032 Ppp1r12b_predicted | |||
| --------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000060633 ENSRNOG00000005032 Ppp1r12b_predicted | |||
| --------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000006671 ENSRNOG00000005032 Ppp1r12b_predicted | |||
| --------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000060631 ENSRNOG00000005032 Ppp1r12b_predicted | |||
| rat | (((.((((((...((((.((..(((((......((((.((((((((((((((....((....))...))..)).)))))))))).))))))))).)).)))).))))))))). | 0.830 -48.40 | ||
| rat | chromosome:13:47749066:47749178:1 | Opposite_strand|Intronic_coding|ENSRNOT00000006671|ENSRNOG00000005032 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000060633|ENSRNOG00000005032 ## ENSRNOG00000005032|protein_coding|Ppp1r12b_predicted|protein phosphatase 1, regulatory (inhibitor) subunit 12B [Source:RefSeq_peptide;Acc:NP_001100648] |
sblock5955 [novel_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.612 | no | no | 0.36/0.55 | 20/23/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 2 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 12 28 17 | 24 5 16 | 5arm 5arm 3arm | 48 48 153 | nd nd nd | 0.30 0.57 0.36 | 3 6 3 | 4 | 2 | -4 | -1 |
| reads | miRBase family seed | |||
| seed | -------------ACCAGGU-------------------------------------------------------------------------------------------------- | 2 | novel | |
| seed | --------------------------------------------------------------------------------UGCUCUC------------------------------- | 1 | novel | |
| seed | -----------------------------UGACUUC---------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T2S1 | |||
| ------------GACCAGGTTGTCTCCTGTGA-------------------------------------------------------------------------------------- | 20 | - | 2 | |
| -------------------------------------------------------------------------------TTGCTCTCAATGACAACTTTGT----------------- | 22 | 1 | - | |
| ----------------------------GTGACTTCAACAGCAACTCCCAC------------------------------------------------------------------- | 23 | 1 | - | |
| rat | ggctaaactgagGACCAGGTTGTCTCCTGTGACTTCAACAGCAACTCCCACtcttccacctttgatgctggggctggcaTTGCTCTCAATGACAACTTTGTaaagctcatttcctggt | |||
| ********************************************************************************************************************** | ||||
| rat | .((((((.((((.((.((((((((...((.((......((((....((((....((.......))...)))))))).......)).))..)))))))).))....)))).))..)))) | 0.540 -24.42 | ||
| rat | chromosome:2:3773598:3773715:-1 | intergenic |
sblock7408 [novel_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.851 | no | no | 0.58/0.65 | 20/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 15 | 13 3 | 5arm 3arm | 27 27 | nd nd | 0.20 0.38 | 2 3 | 2 | 2 | -17 | -12 |
| reads | miRBase family seed | |||
| seed | -GGGGAGA---------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------UCCAGGA------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| ---------------------------------------ATCCAGGAAGAGTTCCAGAGGGCC--------------- | 24 | - | 1 | |
| TGGGGAGAGCGTCTCCACTC---------------------------------------------------------- | 20 | 1 | - | |
| rat | TGGGGAGAGCGTCTCCACTCgaacttccatcagcagttgATCCAGGAAGAGTTCCAGAGGGCCagtgttgcatccttg | |||
| ****************************************************************************** | ||||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000040584 ENSRNOG00000029509 LOC502486 | |||
| rat | .(((((..(((.((((.((((((((((((((((...)))))...)))..)))))..)))))..))...))).))))). | 0.760 -18.80 | ||
| rat | chromosome:20:38493260:38493337:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000040584|ENSRNOG00000029509 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000047637|ENSRNOG00000029509 ## ENSRNOG00000029509|protein_coding|LOC502486| |
sblock8607 [novel_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.054 | no | no | 0.50/0.65 | 20/20/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 31 15 | 4 9 | 5arm 3arm | 26 29 | nd nd | 0.45 0.30 | 4 3 | 2 | 1 | 9 | 11 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------------CUGGACG--------------------------- | 1 | novel |
| seed | --------------------------------CACCCCC-------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| ------------------------------------------------------------------------CCTGGACGTACTGAATCTTG--------------- | 20 | 1 | |
| -------------------------------ACACCCCCAGGGAGACACTG-------------------------------------------------------- | 20 | 1 | |
| rat | ggggctctatgttgccagaggtgccttctgtACACCCCCAGGGAGACACTGtcccgagaaaaagggtcgttcCCTGGACGTACTGAATCTTGcctttggacacctcc | ||
| *********************************************************************************************************** | |||
| rat | ((((........(((((((((((..(((.((((....((((((((....((.(((........))).))))))))))..)))).)))...))))))))).)))))). | 0.890 -38.80 |
| rat | chromosome:4:150452971:150453077:-1 | intergenic |
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