other hairpins
novel_lenNOK_cloningOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (24 loci)
block3067011 [novel_lenNOK_cloningOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.19/0.22 | 18/21/0.14 | 0.0 | 0.0 | 22 | 0 | 8 | 0 | 16 | -3 | 5arm_loop | 1 | nd | 0.37 | 4 | 35 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | -----------------UAACGUG---------------------------------------------------------- | 35 | novel | |||||||
| len | cloning frequencies | |||||||||
| T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------ATAACGTGAAACTTTAATT----------------------------------------------- | 19 | 5 | 2 | 8 | 3 | 1 | 6 | 1 | 1 | |
| ----------------ATAACGTGAAACTTTAATTTT--------------------------------------------- | 21 | 1 | - | 1 | - | - | 1 | - | - | |
| ----------------ATAACGTGAAACTTTAAT------------------------------------------------ | 18 | - | - | - | 1 | - | 2 | - | - | |
| ----------------ATAACGTGAAACTTTAATTT---------------------------------------------- | 20 | 2 | - | - | - | - | - | - | - | |
| rat | gagggaaagggagaaaATAACGTGAAACTTTAATTttatcatttataaagttttgtgtattttctcttaacattttttatcg | |||||||||
| ********************************************************************************** | ||||||||||
| rat | ((..((((((((((((((.(((..((((((((.............))))))))..)))))))))))).....)))))..)). | 1.000 -21.42 | ||||||||
| rat | chromosome:X:121977140:121977221:1 | intergenic |
block1973140 [novel_lenNOK_cloningOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.38/0.48 | 18/21/0.21 | 0.0 | 0.0 | 9 | 0 | 3 | 0 | 29 | -17 | 3arm_loop | 1 | nd | 0.42 | 4 | 14 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------------------GGAAACA-------------------------------- | 12 | novel | ||
| seed | --------------------------------AAACAGA------------------------------ | 1 | novel | ||
| seed | ----------------------------UUGGAAA---------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T3S2 | T5S1 | |||
| -----------------------------TGGAAACAGAATCCATGTG--------------------- | 19 | 1 | - | 9 | |
| ---------------------------TTTGGAAACAGAATCCATGTG--------------------- | 21 | 1 | - | - | |
| -----------------------------TGGAAACAGAATCCATGT---------------------- | 18 | - | 1 | - | |
| -------------------------------GAAACAGAATCCATGTGCCT------------------ | 20 | - | - | 1 | |
| -----------------------------TGGAAACAGAATCCATGTGCC------------------- | 21 | - | - | 1 | |
| rat | gcatggagctggtgttaggtggaatgtttTGGAAACAGAATCCATGTGcctaaagtccacatatatgca | ||||
| ********************************************************************* | |||||
| rat | (((((....(((..(((((((((...(((((....))))))))....))))))...)))....))))). | 1.000 -23.10 | |||
| rat | chromosome:6:122564763:122564831:-1 | intergenic |
block1870408 [novel_lenNOK_cloningOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.33/0.44 | 18/19/0.00 | 0.0 0.0 | 0.0 0.2 | 2 12 | 0 0 | 1 4 | 0 0 | 4 10 | 5 -2 | 5arm 5arm_loop | 2 2 | nd nd | 0.39 0.50 | 4 4 | 14 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------AAAACCC---------------------------------------- | 6 | novel | |||
| seed | -----------------------------------AAAACCC---------------- | 6 | novel | |||
| seed | -----AAAGGUA---------------------------------------------- | 1 | novel | |||
| seed | -----------------------------AAAGGUA---------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S1 | T4S2 | |||
| ----------------------------------TAAAACCCCTTTCCCCTTT----- | 19 | 3 | 1 | 1 | - | |
| ----------TAAAACCCCTTTCCCCTTT----------------------------- | 19 | 3 | 1 | 1 | - | |
| ----------------------------------TAAAACCCCTTTCCCCTT------ | 18 | - | - | - | 1 | |
| ----TAAAGGTAAAACCCCTTT------------------------------------ | 18 | - | 1 | - | - | |
| ----------TAAAACCCCTTTCCCCTT------------------------------ | 18 | - | - | - | 1 | |
| ----------------------------TAAAGGTAAAACCCCTTT------------ | 18 | - | 1 | - | - | |
| rat | ccttTAAAGGTAAAACCCCTTTCCCCTTTAAAGGTAAAACCCCTTTCCCCTTTaaagg | |||||
| ********************************************************** | ||||||
| -------------------------------------------------------------------- | ENSRNOT00000052130 ENSRNOG00000030914 NP_001102732.1 | |||||
| rat | ((((((((((..(((....(((..(((....)))..)))....)))..)))))))))) | 0.680 -14.90 | ||||
| rat | chromosome:5:127688985:127689042:1 | Opposite_strand|Intronic_coding|ENSRNOT00000052130|ENSRNOG00000030914 ## ENSRNOG00000030914|protein_coding|NP_001102732.1| ## {Repeats: dust 127689058 127689064 0 class=dust,trf 55 80 0 class=trf} |
block1870409 [novel_lenNOK_cloningOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.33/0.44 | 18/19/0.00 | 0.0 0.0 | 0.0 0.2 | 2 12 | 0 0 | 1 4 | 0 0 | 4 10 | 5 -2 | 5arm 5arm_loop | 2 2 | nd nd | 0.39 0.50 | 4 4 | 14 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------AAAACCC---------------------------------------- | 6 | novel | |||
| seed | -----------------------------------AAAACCC---------------- | 6 | novel | |||
| seed | -----AAAGGUA---------------------------------------------- | 1 | novel | |||
| seed | -----------------------------AAAGGUA---------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S1 | T4S2 | |||
| ----------------------------------TAAAACCCCTTTCCCCTTT----- | 19 | 3 | 1 | 1 | - | |
| ----------TAAAACCCCTTTCCCCTTT----------------------------- | 19 | 3 | 1 | 1 | - | |
| ----------------------------------TAAAACCCCTTTCCCCTT------ | 18 | - | - | - | 1 | |
| ----TAAAGGTAAAACCCCTTT------------------------------------ | 18 | - | 1 | - | - | |
| ----------TAAAACCCCTTTCCCCTT------------------------------ | 18 | - | - | - | 1 | |
| ----------------------------TAAAGGTAAAACCCCTTT------------ | 18 | - | 1 | - | - | |
| rat | ccttTAAAGGTAAAACCCCTTTCCCCTTTAAAGGTAAAACCCCTTTCCCCTTTaaagg | |||||
| ********************************************************** | ||||||
| -------------------------------------------------------------------- | ENSRNOT00000052130 ENSRNOG00000030914 NP_001102732.1 | |||||
| rat | ((((((((((..(((....(((..(((....)))..)))....)))..)))))))))) | 0.680 -14.90 | ||||
| rat | chromosome:5:127688985:127689042:1 | Opposite_strand|Intronic_coding|ENSRNOT00000052130|ENSRNOG00000030914 ## ENSRNOG00000030914|protein_coding|NP_001102732.1| ## {Repeats: dust 127689034 127689059 0 class=dust,trf 31 56 0 class=trf} |
novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH (24 loci)
block219134 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.487 | no | no | 0.58/0.65 | 19/24/0.50 | 0.0 0.0 | 0.0 0.3 | 5 3 | 0 0 | 2 1 | 0 0 | 9 14 | -3 -13 | 5arm_loop_3arm 5arm_loop_3arm | 1 1 | nd nd | 0.37 0.38 | 4 4 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------GGGAUAG--------------------------------------- | 5 | novel | |
| seed | ---------------AGGCAAC---------------------------------- | 3 | novel | |
| seed | -------GCUGGGA------------------------------------------ | 1 | novel | |
| seed | --------CUGGGAU----------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------TGGGATAGGCAACCCGCTT---------------------------- | 19 | - | 5 | |
| --------------TAGGCAACCCGCTTTCGGGACTC------------------- | 23 | - | 2 | |
| ------TGCTGGGATAGGCAACCCGC------------------------------ | 20 | - | 1 | |
| -------GCTGGGATAGGCAACCCGCTTTC-------------------------- | 23 | 1 | - | |
| --------------TAGGCAACCCGCTTTCGGGACTCT------------------ | 24 | - | 1 | |
| rat | tccgtttgcTGGGATAGGCAACCCGCTTTCGGGACTCtgtggccttttgaaaatgg | |||
| ******************************************************** | ||||
| rat | .((((((...((((((((...((((....))))..)))))..))).....)))))) | 0.980 -14.10 | ||
| rat | chromosome:12:20789136:20789191:1 | intergenic |
block656078 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.053 | no | no | 0.54/0.74 | 18/24/0.15 | 0.0 0.6 0.0 | 0.0 0.0 0.0 | 2 10 1 | 0 0 0 | 1 5 1 | 0 0 0 | 34 46 53 | 1 -6 -13 | 5arm 5arm_loop_3arm 5arm_loop_3arm | 1 1 1 | 5 12 19 | 0.33 0.61 0.63 | 4 5 5 | 13 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------CCUUAGC------------------------------------------------------------------ | 6 | novel | ||||
| seed | ------------------------------------------------CUUAGCC----------------------------------------------------------------- | 4 | novel | ||||
| seed | -----------------------------------GUCUUUU------------------------------------------------------------------------------ | 2 | novel | ||||
| seed | ------------------------------------------------------CCUCGGU----------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T2S2 | T5S1 | T5S2 | |||
| ----------------------------------------------TCCTTAGCCCTCGGTCCAC------------------------------------------------------- | 19 | 1 | 1 | 1 | 1 | 2 | |
| -----------------------------------------------CCTTAGCCCTCGGTCCAC------------------------------------------------------- | 18 | 1 | - | 3 | - | - | |
| ----------------------------------GGTCTTTTGCTCTCCTTAGCCCTC-------------------------------------------------------------- | 24 | - | 2 | - | - | - | |
| -----------------------------------------------------CCCTCGGTCCACGCACTGC------------------------------------------------ | 19 | - | - | - | - | 1 | |
| rat | cgggtataaaaggtggagctgggggaaggcgactGGTCTTTTGCTCTCCTTAGCCCTCGGTCCACGCACTGCtcctagggcaagagccttcacctcttctacagccaacaccatgcgcga | ||||||
| ************************************************************************************************************************ | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000023611 ENSRNOG00000017558 TBB2A_RAT | ||||||
| rat | ((.((((....((((..((((..((((((.((..((.((((((((((....(((...((.....))....)))...)))))))))))).)).))).)))..))))...)))))))).)). | 0.980 -44.20 | |||||
| rat | chromosome:17:37139142:37139261:1 | Same_strand|Boundary_non-coding|ENSRNOT00000023611|ENSRNOG00000017558 ## ENSRNOG00000017558|protein_coding|TBB2A_RAT|Tubulin beta-2A chain. [Source:UniProtKB/Swiss-Prot;Acc:P85108] |
block881141 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.319 | no | no | 0.50/0.58 | 18/25/0.52 | 0.0 0.5 | 0.0 3.4 | 1 16 | 0 0 | 1 4 | 0 0 | 22 26 | -2 -13 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.33 0.33 | 3 4 | 21 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------CACUGUU---------------------------------------------------- | 17 | novel | |||
| seed | -------------------------------GUUGAUU------------------------------------------------ | 3 | novel | |||
| seed | -----------------------CCCUCAC-------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T4S1 | T5S1 | |||
| --------------------------TCACTGTTGATTGGCCAG------------------------------------------ | 18 | - | 1 | 1 | 5 | |
| --------------------------TCACTGTTGATTGGCCAGACGGC------------------------------------- | 23 | - | - | - | 4 | |
| --------------------------TCACTGTTGATTGGCCAGAC---------------------------------------- | 20 | 1 | - | - | 3 | |
| ------------------------------TGTTGATTGGCCAGACGGCAG----------------------------------- | 21 | - | - | - | 2 | |
| --------------------------TCACTGTTGATTGGCCAGACGGCAG----------------------------------- | 25 | - | - | - | 2 | |
| ----------------------GCCCTCACTGTTGATTGG---------------------------------------------- | 18 | - | - | - | 1 | |
| ------------------------------TGTTGATTGGCCAGACGGCAGCAG-------------------------------- | 24 | - | - | - | 1 | |
| rat | ggggtgtcgctggtgcgcgcaggcccTCACTGTTGATTGGCCAGACGGCAGcagggtttgcctaagaacggcagggaaatgcttca | |||||
| ************************************************************************************** | ||||||
| rat | (((((.((.(((.((...(((((((((..((((((.((....)).)))))).))))))))).......)).))).))...))))). | 0.850 -30.00 | ||||
| rat | chromosome:1:129004402:129004487:-1 | intergenic |
block997653 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.062 | no | no | 0.32/0.57 | 18/24/0.50 | 0.0 0.2 0.0 | 1.7 1.5 0.4 | 3 12 5 | 0 0 0 | 1 2 3 | 0 0 0 | 4 15 25 | -2 -11 -19 | 5arm_loop 5arm_loop_3arm 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.32 0.43 0.58 | 4 4 4 | 24 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------AGCUAGC--------------------------------------- | 11 | novel | ||
| seed | --------------------------GAAAACA----------------------------- | 5 | novel | ||
| seed | -----AAGGAAU-------------------------------------------------- | 3 | novel | ||
| seed | -----------------GCUAGCC-------------------------------------- | 3 | novel | ||
| seed | --------------AUAGCUA----------------------------------------- | 2 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S1 | |||
| ---------------TAGCTAGCCGTGAAAACA----------------------------- | 18 | - | - | 4 | |
| ---------------TAGCTAGCCGTGAAAACAGG--------------------------- | 20 | - | - | 4 | |
| -------------------------TGAAAACAGGGGTCTGGAAG----------------- | 20 | 1 | - | 2 | |
| ---------------TAGCTAGCCGTGAAAACAG---------------------------- | 19 | - | - | 2 | |
| ----TAAGGAATATATAGCTAGC--------------------------------------- | 19 | - | - | 2 | |
| ----------------AGCTAGCCGTGAAAACAGGGG------------------------- | 21 | 2 | - | - | |
| -------------------------TGAAAACAGGGGTCTGGAA------------------ | 19 | - | 1 | 1 | |
| ----------------AGCTAGCCGTGAAAACAGG--------------------------- | 19 | - | - | 1 | |
| ---------------TAGCTAGCCGTGAAAACAGGG-------------------------- | 21 | 1 | - | - | |
| -------------TATAGCTAGCCGTGAAAACA----------------------------- | 20 | - | - | 1 | |
| -------------TATAGCTAGCCGTGAAAAC------------------------------ | 19 | - | - | 1 | |
| ----TAAGGAATATATAGCTAGCCGTGA---------------------------------- | 24 | - | - | 1 | |
| rat | gtttTAAGGAATATATAGCTAGCCGTGAAAACAGGGGTCTGGAAGcatattcccacaaaatg | ||||
| ************************************************************** | |||||
| rat | (((((..(((((((....((((((((....))...)).))))....)))))))...))))). | 1.000 -13.90 | |||
| rat | chromosome:1:128264810:128264871:1 | intergenic |
block1033978 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.099 | no | no | 0.67/0.76 | 18/21/0.14 | 0.0 0.0 | 0.0 0.0 | 1 12 | 0 0 | 1 6 | 0 0 | 12 18 | -3 -6 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.57 0.50 | 4 5 | 22 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -------------------GGGAACC------------------------------------ | 21 | novel | ||||||
| seed | -------------CCCUCUG------------------------------------------ | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| ------------------TGGGAACCCCCACCCCTT-------------------------- | 18 | 9 | 3 | 2 | - | 1 | 1 | 1 | |
| ------------------TGGGAACCCCCACCCCTTGGG----------------------- | 21 | 2 | - | - | - | - | - | - | |
| ------------------TGGGAACCCCCACCCCTTG------------------------- | 19 | 1 | - | 1 | - | - | - | - | |
| ------------CCCCTCTGGGAACCCCCACCC----------------------------- | 21 | - | - | - | 1 | - | - | - | |
| rat | agcgtgacacctcccctcTGGGAACCCCCACCCCTTgggcccagcctaccctgagccacgtt | ||||||||
| ************************************************************** | |||||||||
| ------------------------------------------------------------------------ | ENSRNOT00000037624 ENSRNOG00000027264 Nsddr | ||||||||
| rat | ((((((....(((....(((((....((((.....)))))))))........))).)))))) | 0.460 -16.30 | |||||||
| rat | chromosome:1:212765513:212765574:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000037624|ENSRNOG00000027264 ## ENSRNOG00000027264|protein_coding|Nsddr|Sn1-specific diacylglycerol lipase alpha (EC 3.1.1.-) (DGL-alpha) (Neural stem cell-derived dendrite regulator). [Source:UniProtKB/Swiss-Prot;Acc:Q5YLM1] |
block1093960 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.529 | no | no | 0.52/0.60 | 18/26/0.21 | 0.0 3.3 | 0.0 2.9 | 28 7 | 0 0 | 5 2 | 0 0 | 20 30 | -2 -19 | 5arm_loop_3arm 5arm_loop_3arm | 1 1 | nd nd | 0.53 0.32 | 4 5 | 48 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---------------------ACUGCUG------------------------------------------------ | 36 | novel | ||||
| seed | -------------------------------CCUCAGA-------------------------------------- | 2 | novel | ||||
| seed | -------------------------------------AGCGACU-------------------------------- | 2 | novel | ||||
| seed | -------------------AUACUGC-------------------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------AGAGCGA---------------------------------- | 2 | novel | ||||
| seed | ----------------------------------CAGAGCG----------------------------------- | 1 | novel | ||||
| seed | ------------------------GCUGUCU--------------------------------------------- | 1 | novel | ||||
| seed | ----------------------CUGCUGU----------------------------------------------- | 1 | novel | ||||
| seed | -----------------CCAUACU---------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T2S2 | T4S2 | T5S1 | |||
| --------------------TACTGCTGTCTCCTCAGAG------------------------------------- | 19 | 3 | 2 | 1 | 1 | 28 | |
| ------------------CATACTGCTGTCTCCTCAGAG------------------------------------- | 21 | - | - | - | - | 2 | |
| ----------------------------------CAGAGCGACTGACTGACGTGTG-------------------- | 22 | 1 | - | - | - | 1 | |
| ------------------------------------GAGCGACTGACTGACGTGTG-------------------- | 20 | - | - | - | - | 2 | |
| ------------------------------TCCTCAGAGCGACTGACTGAC------------------------- | 21 | - | - | - | - | 2 | |
| -----------------------TGCTGTCTCCTCAGAGCGACTG------------------------------- | 22 | - | - | - | - | 1 | |
| ---------------------ACTGCTGTCTCCTCAGAGCGACTGAC----------------------------- | 26 | - | - | - | - | 1 | |
| ----------------ACCATACTGCTGTCTCCTC----------------------------------------- | 19 | - | - | - | - | 1 | |
| --------------------TACTGCTGTCTCCTCAGAGC------------------------------------ | 20 | - | - | - | - | 1 | |
| ---------------------------------TCAGAGCGACTGACTGAC------------------------- | 18 | - | - | - | - | 1 | |
| rat | acttgtgtctgcagccaccaTACTGCTGTCTCCTCAGAGcgactgactgacgtgtggcccattgcttttgctcagg | ||||||
| **************************************************************************** | |||||||
| rat | .((((.((..((((...((((((....(((...((((.....))))..)))))))))....))))....)).)))) | 0.980 -18.60 | |||||
| rat | chromosome:20:5554007:5554082:1 | intergenic |
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