other hairpins
novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH (24 loci)
block1499864 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.188 | no | no | 0.32/0.42 | 18/22/0.08 | 0.7 0.9 | 0.7 1.6 | 6 7 | 0 0 | 5 3 | 0 0 | 5 14 | 3 -11 | 5arm 5arm_loop_3arm | 2 2 | nd nd | 0.37 0.44 | 4 4 | 13 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ------GUACCUC-------------------------------------------------------- | 4 | novel | |||||
| seed | ---------------UCAGCUC----------------------------------------------- | 4 | miR-337 | |||||
| seed | --------ACCUCAU------------------------------------------------------ | 2 | novel | |||||
| seed | ----------------CAGCUCU---------------------------------------------- | 2 | novel | |||||
| seed | -------------------CUCUUUU------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S1 | T5S1 | |||
| -----TGTACCTCATTCAGCTCTT--------------------------------------------- | 19 | 1 | - | 1 | 1 | - | 1 | |
| ---------------TCAGCTCTTTTTCCATTTT----------------------------------- | 19 | 1 | - | - | - | - | 1 | |
| --------------TTCAGCTCTTTTTCCATTT------------------------------------ | 19 | - | - | - | - | - | 2 | |
| --------------TTCAGCTCTTTTTCCATT------------------------------------- | 18 | - | - | - | - | 1 | 1 | |
| -------TACCTCATTCAGCTCTTTT------------------------------------------- | 19 | - | 1 | - | - | - | 1 | |
| ------------------GCTCTTTTTCCATTTTAAGGAA----------------------------- | 22 | - | - | - | - | - | 1 | |
| rat | catacTGTACCTCATTCAGCTCTTTTTCCATTTTAAGGAAttccagttgggttgaccaaaggcaggtgg | |||||||
| ********************************************************************* | ||||||||
| rat | (((.((((...((((((((((....((((.......))))....)))))))).))......))))))). | 0.970 -15.60 | ||||||
| rat | chromosome:3:141757349:141757417:1 | intergenic |
block1521096 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.899 | no | no | 0.47/0.67 | 18/19/0.00 | 0.0 0.2 0.6 | 0.0 0.6 0.2 | 2 5 5 | 0 0 0 | 1 3 3 | 0 0 0 | 32 35 42 | -3 -7 -15 | 5arm_loop 5arm_loop 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.39 0.56 0.47 | 4 7 8 | 12 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------------GGACUAC--------------------------------------------------------------------- | 4 | novel | |||
| seed | --------------------------------------------CGUUCCA------------------------------------------------------------- | 3 | novel | |||
| seed | -------------------------------------------GCGUUCC-------------------------------------------------------------- | 2 | novel | |||
| seed | ---------------------------------CCCGGAC------------------------------------------------------------------------ | 2 | novel | |||
| seed | -------------------------------------GACUACG-------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S2 | T4S2 | T5S2 | |||
| --------------------------------TCCCGGACTACGCGTTCC-------------------------------------------------------------- | 18 | - | 2 | - | - | |
| -------------------------------------------GCGTTCCAGAATACAGTG--------------------------------------------------- | 18 | - | 1 | 1 | - | |
| ------------------------------------------CGCGTTCCAGAATACAGTG--------------------------------------------------- | 19 | - | - | 2 | - | |
| -----------------------------------CGGACTACGCGTTCCAGA----------------------------------------------------------- | 18 | 2 | - | - | - | |
| -----------------------------------CGGACTACGCGTTCCAGAA---------------------------------------------------------- | 19 | - | 2 | - | - | |
| -------------------------------------------GCGTTCCAGAATACAGTGA-------------------------------------------------- | 19 | - | - | - | 1 | |
| ------------------------------------GGACTACGCGTTCCAGAA---------------------------------------------------------- | 18 | - | - | - | 1 | |
| rat | tctgtgctcacagccttccagaaaagggccgcTCCCGGACTACGCGTTCCAGAATACAGTGAgggtgggggtggggtgctctctgcttgaagtttgcgtttgacggcctaga | |||||
| **************************************************************************************************************** | ||||||
| rat | ((((.(((((..((((((.((...(((((((((((((..((.(((((........)).)))))..))))))))....)))))...)).))))...))...)))..)).)))) | 0.920 -33.80 | ||||
| rat | chromosome:4:6119324:6119435:-1 | intergenic |
block1600514 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.164 | no | no | 0.21/0.50 | 19/21/0.07 | 3.0 0.0 0.0 | 3.0 0.0 0.0 | 3 24 2 | 0 0 0 | 3 2 1 | 0 0 0 | 40 49 56 | -7 -10 -17 | 5arm_loop 5arm_loop_3arm 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.55 0.58 0.53 | 4 7 7 | 30 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------CGGAAAU--------------------------------------------------------------- | 25 | novel | |||
| seed | ---------------------------------------------------------ACUAAAU-------------------------------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------CAAUCGG------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------------CCAAUCG-------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------AGGCCCA------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T4S1 | T5S1 | |||
| -------------------------------------------------TCGGAAATACTAAATATAT---------------------------------------------------- | 19 | - | - | 1 | 24 | |
| --------------------------------------------------------TACTAAATATATAACCAGG--------------------------------------------- | 19 | - | - | - | 2 | |
| ----------------------------------------GAGGCCCAATCGGAAATACT------------------------------------------------------------ | 20 | - | - | - | 1 | |
| ---------------------------------------------CCAATCGGAAATACTAAAT-------------------------------------------------------- | 19 | 1 | - | - | - | |
| --------------------------------------------CCCAATCGGAAATACTAAATA------------------------------------------------------- | 21 | - | 1 | - | - | |
| rat | acctagacacacacctgctcttcactactcaggggctttagaggcccaaTCGGAAATACTAAATATATaaccagggcatgactggggtgcttgacagcagagggaaggagggtcttctgg | |||||
| ************************************************************************************************************************ | ||||||
| rat | .((.((((.....(((.(((((..((..(((((.(((((((..((((....((..(((.......)))..)).))))....))))))).))))).))..))))).)))...))))...)) | 0.970 -34.10 | ||||
| rat | chromosome:4:164240553:164240672:-1 | intergenic |
block1696699 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.258 | no | no | 0.26/0.50 | 18/22/0.21 | 0.0 0.3 0.5 | 0.5 0.3 0.0 | 2 10 4 | 0 0 0 | 2 3 1 | 0 0 0 | 21 26 18 | -6 -12 -21 | 5arm_loop_3arm 5arm_loop_3arm 3arm_loop | 1 1 1 | nd nd nd | 0.32 0.32 0.35 | 5 5 3 | 19 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------CUGUAUA-------------------------------------- | 8 | novel | ||
| seed | ---------------------------UCUGUAU--------------------------------------- | 4 | novel | ||
| seed | ----------------------------------AUGUGAU-------------------------------- | 3 | novel | ||
| seed | ----------------------CCCUUUC-------------------------------------------- | 2 | novel | ||
| seed | ------------------------------------GUGAUAU------------------------------ | 1 | novel | ||
| seed | --------------------------UUCUGUA---------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ---------------------------TCTGTATATGTGATATGGC--------------------------- | 19 | - | 1 | 7 | |
| --------------------------TTCTGTATATGTGATATGG---------------------------- | 19 | 1 | - | 3 | |
| ---------------------------------TATGTGATATGGCGAAGGTGAC------------------ | 22 | - | - | 3 | |
| -----------------------------------TGTGATATGGCGAAGGTGAC------------------ | 20 | - | - | 1 | |
| ---------------------TCCCTTTCTGTATATGTGA--------------------------------- | 19 | 1 | - | - | |
| -------------------------TTTCTGTATATGTGATATG----------------------------- | 19 | - | - | 1 | |
| ---------------------TCCCTTTCTGTATATGTG---------------------------------- | 18 | - | - | 1 | |
| rat | cctgggaagcgactgccaggttccctTTCTGTATATGTGATATGGCGAAGGTGACgctggcctgtgagtggga | ||||
| ************************************************************************* | |||||
| rat | (((.....(((...(((((((..(((((((((((.....)))))).)))))..)).))))).)))....))). | 0.990 -23.20 | |||
| rat | chromosome:4:164285762:164285834:1 | intergenic |
sblock3443 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.288 | no | no | 0.30/0.45 | 18/26/0.56 | 0.0 0.0 0.5 0.0 0.0 | 1.3 0.0 0.5 0.0 0.0 | 6 1 4 1 1 | 0 0 0 0 0 | 2 1 1 1 1 | 0 0 0 0 0 | 8 54 27 14 5 | 25 -17 -4 13 20 | 5arm 5arm_loop_3arm 3arm_loop 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.47 0.58 0.35 0.33 0.35 | 8 8 3 4 4 | 16 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------AGCUAGG--------------------------------------------------------------------------------------------- | 7 | novel | |
| seed | ---------------------------------------------------------------AGCAUGU--------------------------------------- | 3 | novel | |
| seed | -------------AGGCAUU----------------------------------------------------------------------------------------- | 2 | novel | |
| seed | -------------------------------------------------------------CUAGCAU----------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------GAAGCCU------------------------ | 1 | novel | |
| seed | -------------------------------------------------------CAGAAUC----------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------------------------CACAAAU----------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------TAGCTAGGCATTCGGTAAA---------------------------------------------------------------------------------- | 19 | - | 4 | |
| --------------------------------------------------------------TAGCATGTTGACTGCTGAAG--------------------------- | 20 | - | 3 | |
| --------TAGCTAGGCATTCGGTAAAATAC------------------------------------------------------------------------------ | 23 | 1 | 2 | |
| ------------TAGGCATTCGGTAAAATACA----------------------------------------------------------------------------- | 20 | - | 1 | |
| ------------------------------------------------------------------------------------TCACAAATTTACATAGCTGT----- | 20 | - | 1 | |
| ------------------------------------------------------GCAGAATCTAGCATGTTGA------------------------------------ | 19 | - | 1 | |
| ------------TAGGCATTCGGTAAAATACAATGGGG----------------------------------------------------------------------- | 26 | - | 1 | |
| -----------------------------------------------------------------------------TGAAGCCTCACAAATTTA-------------- | 18 | - | 1 | |
| ------------------------------------------------------------TCTAGCATGTTGACTGCTGA----------------------------- | 20 | - | 1 | |
| rat | tgtgacccTAGCTAGGCATTCGGTAAAATACaatggggctgcggtctgagtgatgcagaatcTAGCATGTTGACTGCTGAAGcctcacaaatttacatagctgtaacag | |||
| ************************************************************************************************************* | ||||
| rat | (((.....((((((........(((((......(((((((((((((......((((........))))...))))))...)))))))....))))).))))))..))). | 0.650 -27.90 | ||
| rat | chromosome:12:5630271:5630379:1 | intergenic |
sblock5315 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.390 | no | no | 0.40/0.58 | 19/21/0.11 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 32 1 2 | 0 0 0 0 | 1 2 1 1 | 0 0 0 0 | 27 41 48 7 | 8 -6 -13 32 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 2 2 2 | nd nd nd nd | 0.37 0.58 0.63 0.53 | 4 4 4 4 | 45 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------CCCAGAU------------------------------------------------------------------- | 38 | novel | |
| seed | -------------------------------------------------------------------------------------------CAUGUUU------------------ | 2 | novel | |
| seed | --------------------------------------------CAGAUGA----------------------------------------------------------------- | 2 | novel | |
| seed | -------------------------------------------------GAGAUGA------------------------------------------------------------ | 1 | miR-143 | |
| seed | ----------------------------UGCAGUU--------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------CCAGAUG------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------------------------TCCCAGATGAGATGAAAGT-------------------------------------------------------- | 19 | 2 | 32 | |
| -----------------------------------------TCCCAGATGAGATGAAAGTAG------------------------------------------------------ | 21 | - | 3 | |
| ------------------------------------------------------------------------------------------TCATGTTTGAACTGGGCTT------- | 19 | - | 2 | |
| -------------------------------------------CCAGATGAGATGAAAGTAG------------------------------------------------------ | 19 | - | 2 | |
| -----------------------------------------TCCCAGATGAGATGAAAGTA------------------------------------------------------- | 20 | - | 1 | |
| ------------------------------------------CCCAGATGAGATGAAAGTAG------------------------------------------------------ | 20 | - | 1 | |
| ---------------------------CTGCAGTTGGTCCTTCCCA---------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------TGAGATGAAAGTAGGCAAG------------------------------------------------- | 19 | - | 1 | |
| rat | cttgctccttcctttttcatccacctcctgcagttggtcctTCCCAGATGAGATGAAAGTaggcaagacagggaggagaacctgcagggctcatgtttgaactgggcttcacaagc | |||
| ******************************************************************************************************************** | ||||
| rat | ((((......(((..((((..((..((((((((....(((((((....((..((....))...)).....)))))))....))))))))....))..))))..))).....)))). | 0.980 -33.30 | ||
| rat | chromosome:17:20782256:20782371:1 | intergenic |
sblock7123 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.324 | no | no | 0.37/0.67 | 18/25/0.57 | 0.0 0.0 1.0 0.0 0.0 | 0.0 0.0 0.5 0.5 0.0 | 1 11 2 2 1 | 0 0 0 0 0 | 1 3 2 1 1 | 0 0 0 0 0 | 5 46 52 28 12 | 32 -10 -22 5 20 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.42 0.80 0.60 0.40 0.38 | 6 7 6 3 6 | 28 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------GUGAACU----------------------------------------------------------- | 16 | novel | |||
| seed | -------------------------------------------------GAACUUG--------------------------------------------------------- | 4 | novel | |||
| seed | ------------------------------------------------------------------UAAGCUA---------------------------------------- | 2 | novel | |||
| seed | ------------------------------------------------UGAACUU---------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------UUGGAAA----------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------GGAAACA--------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------GCAUCCC------------------------------------------------------------------- | 1 | miR-324 | |||
| seed | ---------------------------------------------------------------------------------GGUGCCG------------------------- | 1 | novel | |||
| seed | ------GGGCUAU---------------------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S2 | T5S1 | |||
| ----------------------------------------------TGTGAACTTGGAAACACCCT----------------------------------------------- | 20 | - | 1 | 1 | 11 | |
| ------------------------------------------------TGAACTTGGAAACACCCT----------------------------------------------- | 18 | - | - | - | 3 | |
| ----------------------------------------------TGTGAACTTGGAAACACCCTTAAGC------------------------------------------ | 25 | - | - | - | 2 | |
| ----------------------------------------------TGTGAACTTGGAAACACCC------------------------------------------------ | 19 | - | - | - | 1 | |
| --------------------------------------------------------------------------------TGGTGCCGTGGGCAACTCCAG------------ | 21 | 1 | - | - | - | |
| ------------------------------------------------TGAACTTGGAAACACCCTT---------------------------------------------- | 19 | - | - | - | 1 | |
| --------------------------------------GGCATCCCTGTGAACTTGGAAACAC-------------------------------------------------- | 25 | - | - | - | 1 | |
| -----------------------------------------------GTGAACTTGGAAACACCCT----------------------------------------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------CTTGGAAACACCCTTAAGCTAGTCC------------------------------------ | 25 | - | - | - | 1 | |
| ------------------------------------------------------TGGAAACACCCTTAAGCTAGTCCT----------------------------------- | 24 | 1 | - | - | - | |
| -----------------------------------------------------------------TTAAGCTAGTCCTTCTGGT----------------------------- | 19 | - | - | - | 1 | |
| -----------------------------------------------------------------TTAAGCTAGTCCTTCTGGTG---------------------------- | 20 | - | - | - | 1 | |
| -----TGGGCTATAAAATTGGCTA----------------------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| rat | gctcctgggctataaaattggctatggtagtggtggtgggcatcccTGTGAACTTGGAAACACCCTtaagctagtccttctggtgccgtgggcaactccagaggccaggttgt | |||||
| ***************************************************************************************************************** | ||||||
| rat | ((.(((((.((......(((.((((((((.(((....((((....((.......((....))......))...))))..))).)))))))).)))......)).)))))..)) | 0.500 -36.22 | ||||
| rat | chromosome:20:5536290:5536402:1 | intergenic |
sblock11454 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.652 | no | no | 0.32/0.50 | 18/24/0.20 | 0.0 0.8 0.0 0.0 | 0.0 0.8 0.0 0.0 | 1 6 2 1 | 0 0 0 0 | 1 2 1 1 | 0 0 0 0 | 0 26 10 0 | 18 -13 -1 8 | 5arm 5arm_loop_3arm 3arm 3arm | 1 3 3 3 | nd nd nd nd | 0.84 0.42 0.44 0.44 | 16 6 4 6 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------UUGAGCU--------------------------------- | 4 | novel | |
| seed | -------------------------------------------GGACUUU-------------------- | 2 | novel | |
| seed | ----------------------------------------------------AGGGAGC----------- | 1 | novel | |
| seed | -GCAAAUC-------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------GAGCUGU------------------------------- | 1 | novel | |
| seed | ---------------------------CCUUUGA------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------------TTTGAGCTGTGTGTGGACT---------------------- | 19 | - | 3 | |
| ------------------------------------------TGGACTTTATAGGGAGCA---------- | 18 | - | 2 | |
| -------------------------------TGAGCTGTGTGTGGACTT--------------------- | 18 | - | 1 | |
| --------------------------TCCTTTGAGCTGTGTGTGGACTTT-------------------- | 24 | 1 | - | |
| ---------------------------------------------------TAGGGAGCATTAACACTGA | 19 | - | 1 | |
| -----------------------------TTTGAGCTGTGTGTGGACTTT-------------------- | 21 | - | 1 | |
| TGCAAATCAAAATACTGAG--------------------------------------------------- | 19 | - | 1 | |
| rat | TGCAAATCAAAATACTGAGtgtctcaTCCTTTGAGCTGTGTGTGGACTTTATAGGGAGCATTAACACTGA | |||
| ********************************************************************** | ||||
| rat | .................(((((....(((((.(((((......)).)))...)))))......))))).. | 0.650 -11.50 | ||
| rat | chromosome:7:121567579:121567648:1 | intergenic |
novel_loopOverlap_mirtron_nonpairedHIGH (24 loci)
block140772 [novel_loopOverlap_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.032 | no | no | 0.52/0.52 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 10 | -4 | 3arm_loop | 1 | 1 | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------GACUCCU----------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ---------------------------------TGACTCCTCTGTCCTGATGCA---------- | 21 | 1 | |
| rat | tccctctttgccaggctcaggaccaaaggatccTGACTCCTCTGTCCTGATGCAggttgaacga | ||
| **************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000002554 ENSRNOG00000001870 NP_001101796.1 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000046214 ENSRNOG00000001870 NP_001101796.1 | ||
| rat | ....((...(((..(((((((((...((((.......))))..))))))).)).))).)).... | 1.000 -20.40 |
| rat | chromosome:11:85486649:85486712:-1 | Same_strand|Intronic_coding|ENSRNOT00000046214|ENSRNOG00000001870 ## ENSRNOG00000001870|protein_coding|NP_001101796.1|leucine-zipper-like transcriptional regulator, 1 [Source:RefSeq_peptide;Acc:NP_001101796] |
block177733 [novel_loopOverlap_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.040 | no | no | 0.62/0.62 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 15 | -4 | 3arm_loop | 1 | 0 | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------CAACUCC---------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| --------------------------------------------TCAACTCCCCTACCTCCCCAG--------------- | 21 | 1 | |
| rat | gcagggcatgagggagacctgagggaggcctggctgggctcatcTCAACTCCCCTACCTCCCCAGgacccctctctactg | ||
| ******************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000001298 ENSRNOG00000000977 RGD1564611_predicted | ||
| rat | .(((.....(((((...((((.((((((...((..((...........))..))..))))))))))..)))))....))) | 0.990 -31.50 |
| rat | chromosome:12:2630114:2630193:-1 | Same_strand|Intronic_coding|ENSRNOT00000001298|ENSRNOG00000000977 ## ENSRNOG00000000977|protein_coding|RGD1564611_predicted| |
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