miR-Intess: classification

other hairpins

novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH (23 loci)

block1687056 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.095	no	no	0.42/0.45	19/22/0.25	1.2	0.5	4	0	2	0	32	-3	3arm_loop	26	nd	0.32	3	4	2	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------GAUCUUU-------------------------------------------	3	novel
seed	---------------------------------------------------------CCCUUGA------------------------------------------------	1	novel
		len	cloning frequencies
			T2S2	T5S1
	-------------------------------------------------------------TGATCTTTAGGTCTGTCCA--------------------------------	19	3	-
	--------------------------------------------------------TCCCTTGATCTTTAGGTCTGTC----------------------------------	22	-	1
rat	tggggactgggtggtggaaggtatcagatacatgtaggggcctaccagcacaagacTCCCTTGATCTTTAGGTCTGTCCAtagtcgagctcctgtcaaaccatcagccctat
	****************************************************************************************************************
rat	(((((.((.((((((...(((..((.(((..(((...(((((((..((..((((.....))))..)).)))))))...))).)))))...))).....))))))))))))).	0.860 -33.90

rat

chromosome:4:150741279:150741390:1

intergenic

block1687083 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.095	no	no	0.42/0.45	19/22/0.25	1.2	0.5	4	0	2	0	32	-3	3arm_loop	26	nd	0.32	3	4	2	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------GAUCUUU-------------------------------------------	3	novel
seed	---------------------------------------------------------CCCUUGA------------------------------------------------	1	novel
		len	cloning frequencies
			T2S2	T5S1
	-------------------------------------------------------------TGATCTTTAGGTCTGTCCA--------------------------------	19	3	-
	--------------------------------------------------------TCCCTTGATCTTTAGGTCTGTC----------------------------------	22	-	1
rat	tggggactgggtggtggaaggtatcagatacatgtaggggcctaccagcacaagacTCCCTTGATCTTTAGGTCTGTCCAtagtcgagctcctgtcaaaccatcagccctat
	****************************************************************************************************************
rat	(((((.((.((((((...(((..((.(((..(((...(((((((..((..((((.....))))..)).)))))))...))).)))))...))).....))))))))))))).	0.860 -33.90

rat

chromosome:4:150754204:150754315:1

intergenic

block1687098 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.095	no	no	0.42/0.45	19/22/0.25	1.2	0.5	4	0	2	0	32	-3	3arm_loop	26	nd	0.32	3	4	2	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------GAUCUUU-------------------------------------------	3	novel
seed	---------------------------------------------------------CCCUUGA------------------------------------------------	1	novel
		len	cloning frequencies
			T2S2	T5S1
	-------------------------------------------------------------TGATCTTTAGGTCTGTCCA--------------------------------	19	3	-
	--------------------------------------------------------TCCCTTGATCTTTAGGTCTGTC----------------------------------	22	-	1
rat	tggggactgggtggtggaaggtatcagatacatgtaggggcctaccagcacaagacTCCCTTGATCTTTAGGTCTGTCCAtagtcgagctcctgtcaaaccatcagccctat
	****************************************************************************************************************
rat	(((((.((.((((((...(((..((.(((..(((...(((((((..((..((((.....))))..)).)))))))...))).)))))...))).....))))))))))))).	0.860 -33.90

rat

chromosome:4:150756379:150756490:1

intergenic

block1687151 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.038	no	no	0.42/0.45	19/22/0.25	1.2	0.5	4	0	2	0	30	-3	3arm_loop	26	nd	0.41	3	4	2	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------GAUCUUU-----------------------------------------	3	novel
seed	---------------------------------------------------CCCUUGA----------------------------------------------	1	novel
		len	cloning frequencies
			T2S2	T5S1
	-------------------------------------------------------TGATCTTTAGGTCTGTCCA------------------------------	19	3	-
	--------------------------------------------------TCCCTTGATCTTTAGGTCTGTC--------------------------------	22	-	1
rat	gggggtggtggaagatatcagatacctataggggcctaccagcacaagacTCCCTTGATCTTTAGGTCTGTCCAtaatcgagctgctgtcaaaccatcagcccc
	********************************************************************************************************
rat	((((.((((((..((((.(((..........((((..(((((..((((.....))))..))...)))..)))).........))).))))...)))))).))))	0.870 -33.91

rat

chromosome:4:150777973:150778076:1

intergenic

block1709681 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.043	no	no	0.43/0.47	19/23/0.67	1.7	0.7	3	0	2	0	11	-6	3arm_loop	24	nd	0.32	2	3	2	na	na

		reads	miRBase family seed
seed	-----------------------------CACCAAG--------------------------	1	novel
seed	--------------------------------CAAGUCU-----------------------	1	novel
seed	-------------------------------CCAAGUC------------------------	1	novel
		len	cloning frequencies
			T4S1	T5S1
	-------------------------------CCAAGTCTCCTTATCAGGA------------	19	1	-
	------------------------------ACCAAGTCTCCTTATCAGGA------------	20	1	-
	----------------------------TCACCAAGTCTCCTTATCAGGAA-----------	23	-	1
rat	tgatccctgacctctggaaagagactgtTCACCAAGTCTCCTTATCAGGAAttcactgacca
	**************************************************************
rat	(((..(((((.....((...((((((........))))))))..)))))...))).......	0.740 -13.60

rat

chromosome:4:186708554:186708615:1

intergenic

block2156330 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.471	no	no	0.28/0.29	18/24/0.67	1.7	0.3	3	0	2	0	14	-20	3arm_loop	37	nd	0.39	3	3	2	na	na

		reads	miRBase family seed
seed	-----------------------UGUACAA-----------------------------	2	novel
seed	----------------------------AAAGCAA------------------------	1	novel
		len	cloning frequencies
			T3S2	T5S1
	----------------------GTGTACAAAGCAAAAAACAATACA-------------	24	2	-
	---------------------------CAAAGCAAAAAACAATAC--------------	18	-	1
rat	cttaggcaagaggtgtgtttatGTGTACAAAGCAAAAAACAATACAgtgactcctggag
	***********************************************************
	---------------------------------------------------------------------	ENSRNOT00000000206 ENSRNOG00000000190 Ep300
rat	.(((((......((((((((...(((.....)))..))))).))).......)))))..	1.000 -8.92

rat

chromosome:7:119962652:119962710:-1

block2309222 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.604	no	no	0.54/0.56	18/24/0.50	2.0	1.0	2	0	2	0	18	-3	3arm	61	nd	0.56	3	2	2	na	na

		reads	miRBase family seed
seed	-----------------------------AUGGCCA----------------------------------	1	novel
seed	---------------------------------CCAAGUC------------------------------	1	novel
		len	cloning frequencies
			T2S1	T4S2
	----------------------------CATGGCCAAGTCCAAGAACCACAC------------------	24	1	-
	--------------------------------GCCAAGTCCAAGAACCAC--------------------	18	-	1
rat	caggcactgagggagctgccacttaccaCATGGCCAAGTCCAAGAACCACACcacacataagcagacctg
	**********************************************************************
rat	((((..(((..((..((...((((.((....))..))))...))..))..............))).))))	0.920 -10.99

rat

chromosome:8:55022511:55022580:-1

intergenic

block2089729 [novel_lenNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.855	no	no	0.42/0.61	19/23/0.43	0.0 1.5	0.0 2.8	1 6	0 0	1 2	0 0	2 10	10 -4	5arm 5arm	16 16	nd nd	0.35 0.42	2 3	7	2	na	na

		reads	miRBase family seed
seed	--------------GCACACU-------------------------------------------------	3	novel
seed	-----------------CACUCAG----------------------------------------------	2	novel
seed	---CCCCUGC------------------------------------------------------------	1	novel
seed	-----------GGAGCAC----------------------------------------------------	1	novel
		len	cloning frequencies
			T4S2	T5S1
	-------------AGCACACTCAGTATCTACA--------------------------------------	19	-	3
	----------------ACACTCAGTATCTACATGGACCC-------------------------------	23	-	2
	--TCCCCTGCTGGAGCACACTCAGT---------------------------------------------	23	-	1
	----------TGGAGCACACTCAGTATCT-----------------------------------------	19	1	-
rat	agTCCCCTGCTGGAGCACACTCAGTATCTACATGGACCCccgttggcgttagtaggccctagaagaggct
	**********************************************************************
rat	((.((.((.((((.((..(((.((..((...((((....)))).))..)))))..)).)))).)).))))	0.810 -15.60

rat

chromosome:7:17807817:17807886:-1

intergenic

novel_lenNOK_cloningHIGH_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (23 loci)

block842909 [novel_lenNOK_cloningHIGH_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.38/0.50	18/24/0.12	0.0	0.0	68	0	6	0	19	-17	3arm	28	nd	0.47	6	107	6	na	na

		reads	miRBase family seed
seed	--------------------GAACUUA----------------------	83	novel
seed	------------------GUGAACU------------------------	11	novel
seed	----------------------------ACAGUGC--------------	6	novel
seed	-------------------------UAUACAG-----------------	3	novel
seed	--------------------------AUACAGU----------------	2	novel
seed	---------------------AACUUAU---------------------	2	novel
		len	cloning frequencies
			T1S1	T1S2	T2S2	T4S1	T4S2	T5S1
	-------------------TGAACTTATACAGTGCCCA-----------	19	5	2	1	1	1	68
	-----------------TGTGAACTTATACAGTGCC-------------	19	1	1	-	-	-	9
	---------------------------TACAGTGCCCATAGCCATAG--	20	-	-	-	1	-	3
	------------------------TTATACAGTGCCCATAGCCA-----	20	-	-	-	-	-	3
	-------------------TGAACTTATACAGTGCCC------------	18	1	-	-	-	-	1
	---------------------------TACAGTGCCCATAGCCATAGA-	21	-	-	-	-	-	2
	-------------------TGAACTTATACAGTGCCCATAGCC------	24	-	-	-	-	-	2
	-------------------------TATACAGTGCCCATAGCCA-----	19	-	-	-	-	-	2
	--------------------GAACTTATACAGTGCCCAT----------	19	-	-	-	-	-	1
	--------------------GAACTTATACAGTGCCCATAGCCA-----	24	-	-	-	-	-	1
	-------------------TGAACTTATACAGTGCCCATA---------	21	-	-	-	-	-	1
rat	atctggtttaaggtcactgTGAACTTATACAGTGCCCAtagccatagat
	*************************************************
rat	...(((((...((.(((((((......)))))))))...))))).....	1.000 -15.70

rat

chromosome:1:49005032:49005080:-1

intergenic

block843794 [novel_lenNOK_cloningHIGH_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.007	no	no	0.38/0.50	18/24/0.12	0.0	0.0	68	0	6	0	19	-17	3arm	28	nd	0.47	6	107	6	na	na

		reads	miRBase family seed
seed	--------------------GAACUUA----------------------	83	novel
seed	------------------GUGAACU------------------------	11	novel
seed	----------------------------ACAGUGC--------------	6	novel
seed	-------------------------UAUACAG-----------------	3	novel
seed	--------------------------AUACAGU----------------	2	novel
seed	---------------------AACUUAU---------------------	2	novel
		len	cloning frequencies
			T1S1	T1S2	T2S2	T4S1	T4S2	T5S1
	-------------------TGAACTTATACAGTGCCCA-----------	19	5	2	1	1	1	68
	-----------------TGTGAACTTATACAGTGCC-------------	19	1	1	-	-	-	9
	---------------------------TACAGTGCCCATAGCCATAG--	20	-	-	-	1	-	3
	------------------------TTATACAGTGCCCATAGCCA-----	20	-	-	-	-	-	3
	-------------------TGAACTTATACAGTGCCC------------	18	1	-	-	-	-	1
	---------------------------TACAGTGCCCATAGCCATAGA-	21	-	-	-	-	-	2
	-------------------TGAACTTATACAGTGCCCATAGCC------	24	-	-	-	-	-	2
	-------------------------TATACAGTGCCCATAGCCA-----	19	-	-	-	-	-	2
	--------------------GAACTTATACAGTGCCCAT----------	19	-	-	-	-	-	1
	--------------------GAACTTATACAGTGCCCATAGCCA-----	24	-	-	-	-	-	1
	-------------------TGAACTTATACAGTGCCCATA---------	21	-	-	-	-	-	1
rat	atctggtttcaggtcactgTGAACTTATACAGTGCCCAtagccatagat
	*************************************************
rat	...(((((...((.(((((((......)))))))))...))))).....	1.000 -15.70