miR-Intess: classification

other hairpins

novel_lenNOK_cloningHIGH_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (23 loci)

block965602 [novel_lenNOK_cloningHIGH_Multihit_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.38/0.50	18/24/0.12	0.0	0.0	68	0	6	0	19	-17	3arm	28	nd	0.42	6	107	6	na	na

		reads	miRBase family seed
seed	--------------------GAACUUA----------------------	83	novel
seed	------------------GUGAACU------------------------	11	novel
seed	----------------------------ACAGUGC--------------	6	novel
seed	-------------------------UAUACAG-----------------	3	novel
seed	--------------------------AUACAGU----------------	2	novel
seed	---------------------AACUUAU---------------------	2	novel
		len	cloning frequencies
			T1S1	T1S2	T2S2	T4S1	T4S2	T5S1
	-------------------TGAACTTATACAGTGCCCA-----------	19	5	2	1	1	1	68
	-----------------TGTGAACTTATACAGTGCC-------------	19	1	1	-	-	-	9
	---------------------------TACAGTGCCCATAGCCATAG--	20	-	-	-	1	-	3
	------------------------TTATACAGTGCCCATAGCCA-----	20	-	-	-	-	-	3
	-------------------TGAACTTATACAGTGCCC------------	18	1	-	-	-	-	1
	---------------------------TACAGTGCCCATAGCCATAGA-	21	-	-	-	-	-	2
	-------------------TGAACTTATACAGTGCCCATAGCC------	24	-	-	-	-	-	2
	-------------------------TATACAGTGCCCATAGCCA-----	19	-	-	-	-	-	2
	--------------------GAACTTATACAGTGCCCAT----------	19	-	-	-	-	-	1
	--------------------GAACTTATACAGTGCCCATAGCCA-----	24	-	-	-	-	-	1
	-------------------TGAACTTATACAGTGCCCATA---------	21	-	-	-	-	-	1
rat	atctggtttcgggtcactgTGAACTTATACAGTGCCCAtagccatagat
	*************************************************
rat	...(((((..(((.(((((((......))))))))))..))))).....	1.000 -19.50

rat

chromosome:1:52860880:52860928:1

intergenic

novel_lenNOK_cloningOK_Multihit (23 loci)

block843600 [novel_lenNOK_cloningOK_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.025	no	no	0.35/0.42	18/21/0.33	0.5	0.4	13	0	2	0	16	17	3arm	40	nd	0.21	3	18	2	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------------UGACUAG----------------------------	8	novel
seed	------------------------------------------------------------------------------------UUGACUA-----------------------------	7	novel
seed	--------------------------------------------------------------------------------------GACUAGC---------------------------	2	novel
seed	-----------------------------------------------------------------------------------UUUGACU------------------------------	1	novel
		len	cloning frequencies
			T1S2	T5S1
	------------------------------------------------------------------------------------TTGACTAGCCTTATGATCA-----------------	19	-	6
	-----------------------------------------------------------------------------------TTTGACTAGCCTTATGATC------------------	19	-	3
	-----------------------------------------------------------------------------------TTTGACTAGCCTTATGATCA-----------------	20	-	2
	-----------------------------------------------------------------------------------TTTGACTAGCCTTATGATCAC----------------	21	1	1
	-------------------------------------------------------------------------------------TGACTAGCCTTATGATCAC----------------	19	-	2
	----------------------------------------------------------------------------------CTTTGACTAGCCTTATGATC------------------	20	-	1
	------------------------------------------------------------------------------------TTGACTAGCCTTATGATCAC----------------	20	-	1
	------------------------------------------------------------------------------------TTGACTAGCCTTATGATC------------------	18	-	1
rat	tggcgtgtatgtatgctttgtgggtgttgttgggagtgtcctgaaaagaagaagggcatgcccaattgctcttctgcttcctcTTTGACTAGCCTTATGATCACaggcagacattaggcc
	************************************************************************************************************************
rat	.(((.((.((((.(((.(((((...(((((.(((...(((..((.(((.(((((((((........))))))))).)))..))...)))...))).))))))))))))).)))))).)))	0.890 -40.50

rat

chromosome:1:49869681:49869800:-1

intergenic

block846354 [novel_lenNOK_cloningOK_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.417	no	no	0.45/0.50	18/21/0.29	0.2	0.5	21	0	4	0	9	5	5arm	18	nd	0.25	3	28	4	na	na

		reads	miRBase family seed
seed	----------UCCAAAC---------------------------------------------------------------	20	novel
seed	-----------CCAAACU--------------------------------------------------------------	8	novel
		len	cloning frequencies
			T1S1	T1S2	T5S1	T5S2
	---------ATCCAAACTATGGGCTGAC----------------------------------------------------	19	-	1	10	1
	---------ATCCAAACTATGGGCTGACA---------------------------------------------------	20	-	-	7	-
	----------TCCAAACTATGGGCTGACA---------------------------------------------------	19	1	-	4	-
	----------TCCAAACTATGGGCTGAC----------------------------------------------------	18	-	2	1	-
	---------ATCCAAACTATGGGCTGACAG--------------------------------------------------	21	-	-	1	-
rat	tgaaagtaaATCCAAACTATGGGCTGACAgtcacagaggtgatgatgtacccctggtcaatgaaaactggaagaggttca
	********************************************************************************
rat	.(((......((((.((((.(((...((((((((....)))))..))).))).))))..........)))).....))).	0.710 -15.30

rat

chromosome:1:51121075:51121154:-1

intergenic

block847430 [novel_lenNOK_cloningOK_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.880	no	no	0.44/0.44	18/18/0.00	0.0	0.0	11	0	4	0	16	7	5arm	40	nd	0.17	2	12	4	na	na

		reads	miRBase family seed
seed	-----------------CAGUGCA----------------------------------------------------------------------	12	miR-148b/152
		len	cloning frequencies
			T1S1	T2S1	T3S2	T4S1
	----------------TCAGTGCATGACAAGGTT------------------------------------------------------------	18	4	1	4	3
rat	tatgtgccccattgctTCAGTGCATGACAAGGTTaatctgcaggagtagcaaggattttagccagctcacgttctgtatctgaggaagaacatg
	**********************************************************************************************
	--------------------------------------------------------------------------------------------------------	ENSRNOT00000059925 ENSRNOG00000030145 LOC689315
rat	(((((.........((((((((((.(((..(((((((((((.......))).))...)))))).......))).)))).))))))....)))))	0.450 -17.62

rat

chromosome:1:52306140:52306233:-1

block847840 [novel_lenNOK_cloningOK_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.880	no	no	0.44/0.44	18/18/0.00	0.0	0.0	11	0	4	0	16	7	5arm	40	nd	0.17	2	12	4	na	na

		reads	miRBase family seed
seed	-----------------CAGUGCA----------------------------------------------------------------------	12	miR-148b/152
		len	cloning frequencies
			T1S1	T2S1	T3S2	T4S1
	----------------TCAGTGCATGACAAGGTT------------------------------------------------------------	18	4	1	4	3
rat	tatgtgccccattgctTCAGTGCATGACAAGGTTaatctgcaggagtagcaaggattttagccagctcacgttctgtatctgaggaagaacatg
	**********************************************************************************************
	--------------------------------------------------------------------------------------------------------	ENSRNOT00000041486 ENSRNOG00000033456 LOC308198
	--------------------------------------------------------------------------------------------------------	ENSRNOT00000051441 ENSRNOG00000033456 LOC308198
	--------------------------------------------------------------------------------------------------------	ENSRNOT00000059913 ENSRNOG00000033456 LOC308198
	--------------------------------------------------------------------------------------------------------	ENSRNOT00000044415 ENSRNOG00000033456 LOC308198
rat	(((((.........((((((((((.(((..(((((((((((.......))).))...)))))).......))).)))).))))))....)))))	0.450 -17.62

rat

chromosome:1:52515958:52516051:-1

block847897 [novel_lenNOK_cloningOK_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.841	no	no	0.44/0.44	18/18/0.00	0.0	0.0	11	0	4	0	16	10	5arm	40	nd	0.17	2	12	4	na	na

		reads	miRBase family seed
seed	-----------------CAGUGCA----------------------------------------------------------------------	12	miR-148b/152
		len	cloning frequencies
			T1S1	T2S1	T3S2	T4S1
	----------------TCAGTGCATGACAAGGTT------------------------------------------------------------	18	4	1	4	3
rat	tatgtgccccattgctTCAGTGCATGACAAGGTTaatctgcaggagtaccaaggattttagccagctcgcgttctgtatctgaggaagaacatg
	**********************************************************************************************
rat	(((((.........((((((((((.(((..(((((((((...((....))..))))..))))).......))).)))).))))))....)))))	0.400 -18.72

rat

chromosome:1:52563259:52563352:-1

intergenic

block960706 [novel_lenNOK_cloningOK_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.417	no	no	0.45/0.50	18/21/0.29	0.2	0.5	21	0	4	0	9	5	5arm	18	nd	0.25	3	28	4	na	na

		reads	miRBase family seed
seed	----------UCCAAAC---------------------------------------------------------------	20	novel
seed	-----------CCAAACU--------------------------------------------------------------	8	novel
		len	cloning frequencies
			T1S1	T1S2	T5S1	T5S2
	---------ATCCAAACTATGGGCTGAC----------------------------------------------------	19	-	1	10	1
	---------ATCCAAACTATGGGCTGACA---------------------------------------------------	20	-	-	7	-
	----------TCCAAACTATGGGCTGACA---------------------------------------------------	19	1	-	4	-
	----------TCCAAACTATGGGCTGAC----------------------------------------------------	18	-	2	1	-
	---------ATCCAAACTATGGGCTGACAG--------------------------------------------------	21	-	-	1	-
rat	tgaaagtaaATCCAAACTATGGGCTGACAgtcacagaggtgatgatgtacccctggtcaatgaaaactggaagaggttca
	********************************************************************************
rat	.(((......((((.((((.(((...((((((((....)))))..))).))).))))..........)))).....))).	0.710 -15.30

rat

chromosome:1:50003119:50003198:1

intergenic

block961207 [novel_lenNOK_cloningOK_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.417	no	no	0.45/0.50	18/21/0.29	0.2	0.5	21	0	4	0	9	5	5arm	18	nd	0.25	3	28	4	na	na

		reads	miRBase family seed
seed	----------UCCAAAC---------------------------------------------------------------	20	novel
seed	-----------CCAAACU--------------------------------------------------------------	8	novel
		len	cloning frequencies
			T1S1	T1S2	T5S1	T5S2
	---------ATCCAAACTATGGGCTGAC----------------------------------------------------	19	-	1	10	1
	---------ATCCAAACTATGGGCTGACA---------------------------------------------------	20	-	-	7	-
	----------TCCAAACTATGGGCTGACA---------------------------------------------------	19	1	-	4	-
	----------TCCAAACTATGGGCTGAC----------------------------------------------------	18	-	2	1	-
	---------ATCCAAACTATGGGCTGACAG--------------------------------------------------	21	-	-	1	-
rat	tgaaagtaaATCCAAACTATGGGCTGACAgtcacagaggtgatgatgtacccctggtcaatgaaaactggaagaggttca
	********************************************************************************
rat	.(((......((((.((((.(((...((((((((....)))))..))).))).))))..........)))).....))).	0.710 -15.30

rat

chromosome:1:50588100:50588179:1

intergenic

block961415 [novel_lenNOK_cloningOK_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.417	no	no	0.45/0.50	18/21/0.29	0.2	0.5	21	0	4	0	9	5	5arm	18	nd	0.25	3	28	4	na	na

		reads	miRBase family seed
seed	----------UCCAAAC---------------------------------------------------------------	20	novel
seed	-----------CCAAACU--------------------------------------------------------------	8	novel
		len	cloning frequencies
			T1S1	T1S2	T5S1	T5S2
	---------ATCCAAACTATGGGCTGAC----------------------------------------------------	19	-	1	10	1
	---------ATCCAAACTATGGGCTGACA---------------------------------------------------	20	-	-	7	-
	----------TCCAAACTATGGGCTGACA---------------------------------------------------	19	1	-	4	-
	----------TCCAAACTATGGGCTGAC----------------------------------------------------	18	-	2	1	-
	---------ATCCAAACTATGGGCTGACAG--------------------------------------------------	21	-	-	1	-
rat	tgaaagtaaATCCAAACTATGGGCTGACAgtcacagaggtgatgatgtacccctggtcaatgaaaactggaagaggttca
	********************************************************************************
rat	.(((......((((.((((.(((...((((((((....)))))..))).))).))))..........)))).....))).	0.710 -15.30

rat

chromosome:1:50838924:50839003:1

intergenic

block2066039 [novel_lenNOK_cloningOK_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.308	no	no	0.40/0.47	18/22/0.18	0.3 0.0	0.3 0.0	7 1	0 0	2 1	0 0	13 8	14 19	3arm 3arm	23 23	nd nd	0.05 0.15	1 3	11	2	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------CGGUUUG-------------------------	6	novel
seed	---------------------------------------------------------------------------------------GGUUUGU------------------------	4	novel
seed	-------------------------------------------------------------------------------------------UGUGUCA--------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2
	-------------------------------------------------------------------------------------CCGGTTTGTGTCAGTAGAA--------------	19	-	5
	--------------------------------------------------------------------------------------CGGTTTGTGTCAGTAGAAT-------------	19	1	2
	--------------------------------------------------------------------------------------CGGTTTGTGTCAGTAGAA--------------	18	1	-
	-------------------------------------------------------------------------------------CCGGTTTGTGTCAGTAGAATTG-----------	22	1	-
	------------------------------------------------------------------------------------------TTGTGTCAGTAGAATTGCGA--------	20	1	-
rat	tcattttttttcttcattttactcccagaatacatacctccaaggtgatttcagagttcttcctcagtcttgagatttgggattcCCGGTTTGTGTCAGTAGAATtgcgagagtgtga
	**********************************************************************************************************************
rat	((((...(((((...((((((((....((.((((.(((.....((..((..((((.(((............))).))))..))..))))).))))))))))))))...))))).))))	0.660 -25.00