other hairpins
novel_lenNOK_cloningOK_Multihit (23 loci)
block2066276 [novel_lenNOK_cloningOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.118 | no | no | 0.42/0.47 | 18/22/0.10 | 0.3 | 0.3 | 7 | 0 | 2 | 0 | 15 | 15 | 3arm | 23 | nd | 0.11 | 1 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------------------CGGUUUG--------------------------- | 6 | novel | |
| seed | -------------------------------------------------------------------------------------GGUUUGU-------------------------- | 4 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -----------------------------------------------------------------------------------CCGGTTTGTGTCAGTAGAA---------------- | 19 | - | 5 | |
| ------------------------------------------------------------------------------------CGGTTTGTGTCAGTAGAAT--------------- | 19 | 1 | 2 | |
| ------------------------------------------------------------------------------------CGGTTTGTGTCAGTAGAA---------------- | 18 | 1 | - | |
| -----------------------------------------------------------------------------------CCGGTTTGTGTCAGTAGAATTG------------- | 22 | 1 | - | |
| rat | attttttttctgccttttactcccaggatacatacctccaaggtgatttcagagttcttcctcagtcctgaggtttgggattcCCGGTTTGTGTCAGTAGAATtgccagagtgtgagt | |||
| ********************************************************************************************************************** | ||||
| rat | ((((...((((((.(((((((.....((((((.(((.....((..((..((((......(((((....)))))))))..))..))))).)))))))))))))..)).))))...)))) | 0.540 -31.00 | ||
| rat | chromosome:6:134312566:134312683:1 | intergenic |
block2066280 [novel_lenNOK_cloningOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.402 | no | no | 0.42/0.47 | 18/22/0.10 | 0.3 | 0.3 | 7 | 0 | 2 | 0 | 10 | 17 | 5arm | 23 | nd | 0.26 | 2 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------CGGUUUG------------------------------------------------------------------------------------------------------ | 6 | novel | |
| seed | ------------GGUUUGU----------------------------------------------------------------------------------------------------- | 4 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ----------CCGGTTTGTGTCAGTAGAA------------------------------------------------------------------------------------------- | 19 | - | 5 | |
| -----------CGGTTTGTGTCAGTAGAAT------------------------------------------------------------------------------------------ | 19 | 1 | 2 | |
| -----------CGGTTTGTGTCAGTAGAA------------------------------------------------------------------------------------------- | 18 | 1 | - | |
| ----------CCGGTTTGTGTCAGTAGAATTG---------------------------------------------------------------------------------------- | 22 | 1 | - | |
| rat | ttttgggattCCGGTTTGTGTCAGTAGAATtgtgagagtgtgagttcatcctatttttttcagaacgatttttttcttgcatgtattccctctaccggtatgaatttagtatcttgggag | |||
| ************************************************************************************************************************ | ||||
| rat | (((..((((...((((..((((.(((((..((..((((.....((((...............)))).......))))..)).........))))).))))..))))....))))..))). | 0.970 -23.56 | ||
| rat | chromosome:6:134313526:134313645:1 | intergenic |
block2066312 [novel_lenNOK_cloningOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.224 | no | no | 0.42/0.47 | 18/22/0.10 | 0.3 | 0.3 | 7 | 0 | 2 | 0 | 10 | 21 | 5arm | 23 | nd | 0.26 | 2 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------CGGUUUG------------------------------------------------------------------------------------------------------ | 6 | novel | |
| seed | ------------GGUUUGU----------------------------------------------------------------------------------------------------- | 4 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ----------CCGGTTTGTGTCAGTAGAA------------------------------------------------------------------------------------------- | 19 | - | 5 | |
| -----------CGGTTTGTGTCAGTAGAAT------------------------------------------------------------------------------------------ | 19 | 1 | 2 | |
| -----------CGGTTTGTGTCAGTAGAA------------------------------------------------------------------------------------------- | 18 | 1 | - | |
| ----------CCGGTTTGTGTCAGTAGAATTG---------------------------------------------------------------------------------------- | 22 | 1 | - | |
| rat | ttttgggattCCGGTTTGTGTCAGTAGAATtgtgagagtgtgagttcatcctatttttttcggaacgatttttttcttgcatgtattccctctaccggtatgaatttagtatcttgggag | |||
| ************************************************************************************************************************ | ||||
| rat | (((..((((...((((..((((.(((((..((..((((...(((((..(((..........)))..)))))..))))..)).........))))).))))..))))....))))..))). | 0.990 -25.60 | ||
| rat | chromosome:6:134322526:134322645:1 | intergenic |
block2066326 [novel_lenNOK_cloningOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.484 | no | no | 0.42/0.47 | 18/22/0.10 | 0.3 | 0.3 | 7 | 0 | 2 | 0 | 7 | 14 | 5arm | 23 | nd | 0.26 | 1 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------CGGUUUG-------------------------------------------------------------------------------- | 6 | novel | |
| seed | ---------GGUUUGU------------------------------------------------------------------------------- | 4 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -------CCGGTTTGTGTCAGTAGAA--------------------------------------------------------------------- | 19 | - | 5 | |
| --------CGGTTTGTGTCAGTAGAAT-------------------------------------------------------------------- | 19 | 1 | 2 | |
| -------CCGGTTTGTGTCAGTAGAATTG------------------------------------------------------------------ | 22 | 1 | - | |
| --------CGGTTTGTGTCAGTAGAA--------------------------------------------------------------------- | 18 | 1 | - | |
| rat | gggattcCCGGTTTGTGTCAGTAGAATtgccagagtgtgagttcatcctattttcttcagtttgattttttttcttgcatgtaatgcctcttccc | |||
| *********************************************************************************************** | ||||
| rat | ((((.....(((.(((((.((.((((....((((.((.(((...........)))..)).))))....)))).)).)))))....)))...)))) | 0.930 -16.50 | ||
| rat | chromosome:6:134326096:134326190:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_randfoldOK (23 loci)
sblock1114 [novel_lenNOK_cloningOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.52/0.70 | 18/22/0.40 | 0.1 0.0 | 0.9 0.0 | 9 1 | 0 0 | 5 1 | 0 0 | 19 22 | 3 4 | 5arm 3arm | 1 1 | nd nd | 0.30 0.24 | 4 3 | 10 | 5 | 1 | 0 |
| reads | miRBase family seed | ||||||
| seed | ---------------------CCUGGCA-------------------------------------------------------------------- | 8 | novel | ||||
| seed | --------------------UCCUGGC--------------------------------------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------------CCUCCUG----------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T4S1 | T4S2 | T5S1 | |||
| --------------------TCCTGGCAGGGGACACGAG--------------------------------------------------------- | 19 | - | - | 1 | 2 | 1 | |
| --------------------TCCTGGCAGGGGACACGAGG-------------------------------------------------------- | 20 | 2 | - | - | - | - | |
| --------------------TCCTGGCAGGGGACACGA---------------------------------------------------------- | 18 | - | 1 | - | - | - | |
| -----------------------------------------------------TCCTCCTGAAGCTGCCAGAAA---------------------- | 21 | - | - | - | - | 1 | |
| -------------------TTCCTGGCAGGGGACACG----------------------------------------------------------- | 18 | 1 | - | - | - | - | |
| --------------------TCCTGGCAGGGGACACGAGGAC------------------------------------------------------ | 22 | - | - | - | 1 | - | |
| rat | gccaagtgctcatgagctgTTCCTGGCAGGGGACACGAGGACatttggtaaagTCCTCCTGAAGCTGCCAGAAAcagctcaagacgcaatgtggca | ||||||
| ************************************************************************************************ | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000018647 ENSRNOG00000013687 Ablim1_predicted | ||||||
| rat | ((((..(((((.(((((((((.(((((((....((.((((((.((....)).)))))).))...))))))).))))))))).)).)))...)))). | 1.000 -51.10 | |||||
| rat | chromosome:1:263581625:263581720:-1 | Same_strand|Intronic_coding|ENSRNOT00000018647|ENSRNOG00000013687 ## Same_strand|Boundary_non-coding|ENSRNOT00000018611|ENSRNOG00000013687 ## ENSRNOG00000013687|protein_coding|Ablim1_predicted|actin-binding LIM protein 1 [Source:RefSeq_peptide;Acc:NP_001037859] |
sblock11278 [novel_lenNOK_cloningOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.50/0.57 | 18/23/0.51 | 0.0 0.8 | 1.4 2.0 | 33 6 | 0 0 | 4 3 | 0 0 | 24 22 | 3 3 | 5arm 3arm | 2 2 | nd nd | 0.25 0.17 | 2 1 | 47 | 5 | 0 | 1 |
| reads | miRBase family seed | ||||||
| seed | -------------------------UUCCUCU------------------------------------------------------------------------ | 40 | novel | ||||
| seed | -------------------------------------------------------------CUCUAGG------------------------------------ | 5 | novel | ||||
| seed | --------------------------UCCUCUC----------------------------------------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------------------CCUCUAG------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S1 | T3S2 | T5S2 | |||
| ------------------------TTTCCTCTCTGCCCCATAG------------------------------------------------------------- | 19 | 4 | 7 | 2 | 1 | - | |
| ------------------------TTTCCTCTCTGCCCCATAGGG----------------------------------------------------------- | 21 | 3 | 5 | - | - | - | |
| ------------------------TTTCCTCTCTGCCCCATAGG------------------------------------------------------------ | 20 | 3 | 5 | - | - | - | |
| ------------------------TTTCCTCTCTGCCCCATAGGGT---------------------------------------------------------- | 22 | - | 3 | 1 | - | - | |
| ------------------------TTTCCTCTCTGCCCCATA-------------------------------------------------------------- | 18 | 1 | 2 | - | - | - | |
| ------------------------------------------------------------CCTCTAGGGAAGAGAAGGT------------------------- | 19 | 1 | 1 | - | - | 1 | |
| ------------------------TTTCCTCTCTGCCCCATAGGGTG--------------------------------------------------------- | 23 | - | 3 | - | - | - | |
| ------------------------------------------------------------CCTCTAGGGAAGAGAAGGTTGG---------------------- | 22 | 1 | - | - | - | - | |
| -------------------------TTCCTCTCTGCCCCATAG------------------------------------------------------------- | 18 | - | 1 | - | - | - | |
| ------------------------------------------------------------CCTCTAGGGAAGAGAAGG-------------------------- | 18 | 1 | - | - | - | - | |
| -----------------------------------------------------------CCCTCTAGGGAAGAGAAG--------------------------- | 18 | - | 1 | - | - | - | |
| rat | aggtgtaacacaggtggtacgcccTTTCCTCTCTGCCCCATAGGGTGtagctctaactaccctctagggaagagaaggttgggtgaacagccttactatttcta | ||||||
| ******************************************************************************************************** | |||||||
| rat | (((.(((....((((.((.(((((...(((((((..(((.(((((.((((......)))).)))))))).))))).))..))))).)).))))...))).))). | 0.960 -40.10 | |||||
| rat | chromosome:7:39696143:39696246:1 | intergenic |
sblock11715 [novel_lenNOK_cloningOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.26/0.58 | 19/21/0.29 | 0.8 0.0 0.0 0.0 | 0.8 0.0 0.0 0.0 | 8 3 3 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 15 27 36 15 | 11 0 3 23 | 5arm 5arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.32 0.15 0.26 0.45 | 6 1 3 7 | 17 | 2 | -10 | -12 |
| reads | miRBase family seed | |||
| seed | ------------------GAGUGAC--------------------------------------------------------------------------------------- | 6 | novel | |
| seed | ----------------------------UCUAUAU----------------------------------------------------------------------------- | 3 | novel | |
| seed | ----------------------------------------------------------AGUCUUG----------------------------------------------- | 3 | novel | |
| seed | ----------------CUGAGUG----------------------------------------------------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------------------------UGCAUUC--------------------------- | 1 | novel | |
| seed | ---------------------UGACUUU------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------TGAGTGACTTTTCTATATT---------------------------------------------------------------------------- | 19 | 1 | 5 | |
| ---------------------------------------------------------TAGTCTTGGAGGTGTGGCC------------------------------------ | 19 | - | 3 | |
| ---------------------------TTCTATATTTCCAGCTTGAC----------------------------------------------------------------- | 20 | - | 3 | |
| ---------------TCTGAGTGACTTTTCTATA------------------------------------------------------------------------------ | 19 | - | 3 | |
| -----------------------------------------------------------------------------TTGCATTCAGAATGGACTGA--------------- | 20 | - | 1 | |
| --------------------GTGACTTTTCTATATTTCCAG----------------------------------------------------------------------- | 21 | - | 1 | |
| rat | gaaaggggaacgttcTCTGAGTGACTTTTCTATATTTCCAGCTTGACggaaggagttTAGTCTTGGAGGTGTGGCCcttgcattcagaatggactgaagcgttcctctgtca | |||
| **************************************************************************************************************** | ||||
| rat | ((.((((((((((((((((((((......((((((((((((((.(((.......))).)))..)))))))))))......)))))))).......))).))))))))).)). | 1.000 -42.11 | ||
| rat | chromosome:8:57749415:57749526:-1 | intergenic |
sblock12433 [novel_lenNOK_cloningOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.40/0.55 | 18/22/0.67 | 0.1 0.8 | 0.9 2.2 | 7 5 | 0 0 | 3 3 | 0 0 | 28 27 | 1 2 | 5arm 3arm | 1 1 | nd nd | 0.00 0.05 | 0 1 | 12 | 4 | 1 | 0 |
| reads | miRBase family seed | |||||
| seed | -----------------------------GGGCUAG--------------------------------------------------------------------------- | 6 | novel | |||
| seed | ---------------------------------------------------------------CUAAGCU----------------------------------------- | 3 | novel | |||
| seed | -----------------------------------------------------------------AAGCUGU--------------------------------------- | 2 | novel | |||
| seed | ------------------------------GGCUAGU-------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S1 | T5S1 | |||
| ----------------------------AGGGCTAGTTAACAGTTTAGG-------------------------------------------------------------- | 21 | 1 | 1 | - | - | |
| ----------------------------AGGGCTAGTTAACAGTTTAG--------------------------------------------------------------- | 20 | 1 | 1 | - | - | |
| ----------------------------AGGGCTAGTTAACAGTTTAGGT------------------------------------------------------------- | 22 | - | 1 | - | 1 | |
| -----------------------------GGGCTAGTTAACAGTTTAG--------------------------------------------------------------- | 19 | 1 | - | - | - | |
| ----------------------------------------------------------------TAAGCTGTTAACTAGCGC----------------------------- | 18 | 1 | - | - | - | |
| --------------------------------------------------------------CCTAAGCTGTTAACTAGCG------------------------------ | 19 | - | 1 | - | - | |
| --------------------------------------------------------------CCTAAGCTGTTAACTAGC------------------------------- | 18 | - | 1 | - | - | |
| ----------------------------------------------------------------TAAGCTGTTAACTAGCGCCC--------------------------- | 20 | - | - | 1 | - | |
| --------------------------------------------------------------CCTAAGCTGTTAACTAGCGCCC--------------------------- | 22 | 1 | - | - | - | |
| rat | ccttcaggttcatgttccgtggagcatgAGGGCTAGTTAACAGTTTAGGTtaacacctaggaCCTAAGCTGTTAACTAGCGCCCatgcccggcagcatgtgcacagtgaag | |||||
| *************************************************************************************************************** | ||||||
| rat | .(((((.((.((((((((..((.(((((.((((((((((((((((((((((.........)))))))))))))))))))).))))))))))).)))))).))....))))) | 1.000 -56.60 | ||||
| rat | chromosome:9:45537632:45537742:1 | intergenic |
sblock12739 [novel_lenNOK_cloningOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.39/0.44 | 18/23/0.59 | 0.0 0.0 | 0.0 1.1 | 1 24 | 0 0 | 1 5 | 0 0 | 13 12 | 8 4 | 5arm 3arm | 1 1 | nd nd | 0.17 0.16 | 2 2 | 34 | 5 | -3 | 2 |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------GACUAGG-------------------------- | 33 | novel | ||||
| seed | --------------GCUUGUA------------------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T5S1 | |||
| -----------------------------------------------TGACTAGGGTAGTATGAGTAGA------------ | 22 | - | - | - | - | 11 | |
| -----------------------------------------------TGACTAGGGTAGTATGAGT--------------- | 19 | - | 1 | - | 1 | 7 | |
| -----------------------------------------------TGACTAGGGTAGTATGAGTAG------------- | 21 | 1 | - | 1 | - | 6 | |
| -----------------------------------------------TGACTAGGGTAGTATGAG---------------- | 18 | - | 1 | - | - | 3 | |
| -------------TGCTTGTACTTATTCTGG-------------------------------------------------- | 18 | - | - | - | - | 1 | |
| -----------------------------------------------TGACTAGGGTAGTATGAGTAGAG----------- | 23 | - | - | - | - | 1 | |
| rat | gtgtgctatgccctgcttgtacttattctggtgacatgaggtatctgTGACTAGGGTAGTATGAGTAGAgtaaagttcacc | ||||||
| ********************************************************************************* | |||||||
| rat | (((.(((.(((.(((((..(((.(((((((((.(((.((....))))).))))))))))))..))))).))).))).))). | 1.000 -35.10 | |||||
| rat | chromosome:X:152867129:152867209:-1 | intergenic |
sblock1844 [novel_lenNOK_cloningOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.58/0.62 | 18/22/0.64 | 0.0 0.0 | 0.5 0.5 | 4 8 | 0 0 | 2 2 | 0 0 | 18 10 | 5 12 | 5arm 3arm | 4 5 | nd nd | 0.05 0.00 | 1 0 | 14 | 2 | 1 | 0 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------UCUAGCC---------------------- | 10 | novel | |
| seed | -------------------AGUCAGG------------------------------------------------------------------ | 4 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| --------------------------------------------------------------CTCTAGCCAGGGCTTGACTG---------- | 20 | 4 | - | |
| --------------------------------------------------------------CTCTAGCCAGGGCTTGACT----------- | 19 | 4 | - | |
| ------------------AAGTCAGGCTCCTGGCTGGAG----------------------------------------------------- | 21 | 1 | 1 | |
| ------------------AAGTCAGGCTCCTGGCTGGAGT---------------------------------------------------- | 22 | - | 2 | |
| --------------------------------------------------------------CTCTAGCCAGGGCTTGACTGC--------- | 21 | 1 | - | |
| --------------------------------------------------------------CTCTAGCCAGGGCTTGAC------------ | 18 | - | 1 | |
| rat | agagcacagggctttttcAAGTCAGGCTCCTGGCTGGAGTccagctctaagctggatccaggCTCTAGCCAGGGCTTGACTGcactctgctc | |||
| ******************************************************************************************** | ||||
| rat | .(((((.((.((.......((((((((.(((((((((((((((((.....)))))......)))))))))))))))))))))).)).))))) | 0.990 -51.41 | ||
| rat | chromosome:1:116121719:116121810:1 | intergenic |
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