other hairpins
novel_lenNOK_cloningOK_randfoldOK_bulgeHIGH (23 loci)
novel_multiarm_DicerNOK_5varHIGH_loopOverlap (23 loci)
block1109135 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.278 | no | no | 0.46/0.57 | 19/24/0.78 | 2.7 0.0 0.0 0.0 | 4.3 0.0 0.0 0.0 | 3 4 1 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 6 18 26 5 | -6 -11 -20 2 | 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.16 0.25 0.29 0.26 | 1 4 4 4 | 9 | 2 | 3 | 0 |
| reads | miRBase family seed | |||
| seed | -------------------GGGACAU----------------------------------- | 4 | novel | |
| seed | ----------------------------------GCUCGAG-------------------- | 1 | novel | |
| seed | ------------UCUUCUU------------------------------------------ | 1 | novel | |
| seed | -------AAUGCUC----------------------------------------------- | 1 | novel | |
| seed | ----------GCUCUUC-------------------------------------------- | 1 | novel | |
| seed | ---------------------------UGGAGAU--------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------TGGGACATTTGGAGATGCTC----------------------- | 20 | - | 4 | |
| ---------TGCTCTTCTTGGGACATTTGGAGA---------------------------- | 24 | - | 1 | |
| ------GAATGCTCTTCTTGGGACA------------------------------------ | 19 | 1 | - | |
| -----------CTCTTCTTGGGACATTTGG------------------------------- | 19 | - | 1 | |
| --------------------------TTGGAGATGCTCGAGCAGGAC-------------- | 21 | - | 1 | |
| ---------------------------------TGCTCGAGCAGGACTATCATGAA----- | 23 | - | 1 | |
| rat | tccactgaatgctcttctTGGGACATTTGGAGATGCTCgagcaggactatcatgaatggga | |||
| ************************************************************* | ||||
| ----------------------------------------------------------------------- | ENSRNOT00000035355 ENSRNOG00000023712 Stox1_predicted | |||
| rat | ((((.((.(((.((((((((((.((((....)))))))))).)))).)))))....)))). | 0.900 -14.80 | ||
| rat | chromosome:20:29928781:29928841:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000035355|ENSRNOG00000023712 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000057578|ENSRNOG00000023712 ## ENSRNOG00000023712|protein_coding|Stox1_predicted| |
block2153208 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.913 | no | no | 0.40/0.60 | 18/25/0.79 | 0.0 2.8 0.0 | 0.0 3.5 0.0 | 1 12 1 | 0 0 0 | 1 1 1 | 0 0 0 | 22 28 25 | 1 -22 1 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.25 0.36 0.32 | 2 6 3 | 14 | 1 | 0 | 2 |
| reads | miRBase family seed | ||
| seed | -----------------------------------GGUCUCA------------------------------------------------------- | 4 | novel |
| seed | ------------------------------------GUCUCAU------------------------------------------------------ | 3 | novel |
| seed | -------------------------------------------CAAAGUA----------------------------------------------- | 2 | novel |
| seed | ----------------------------------------CAUCAAA-------------------------------------------------- | 1 | novel |
| seed | ---------------------------------------------------GGAGUGG--------------------------------------- | 1 | novel |
| seed | -----------------------CUGCAUG------------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------GACCCAG------------------------------------------------------------- | 1 | novel |
| seed | --------------------------------CCAGGUC---------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------------AGGTCTCATCAAAGTATGGAG------------------------------------------ | 21 | 3 | |
| ------------------------------------------TCAAAGTATGGAGTGGGTAGTGA-------------------------------- | 23 | 1 | |
| -----------------------------------GGTCTCATCAAAGTATGGAG------------------------------------------ | 20 | 1 | |
| -------------------------------CCCAGGTCTCATCAAAGTA----------------------------------------------- | 19 | 1 | |
| ----------------------------TGACCCAGGTCTCATCAAAGT------------------------------------------------ | 21 | 1 | |
| ---------------------------------------TCATCAAAGTATGGAGTGGGTAGTG--------------------------------- | 25 | 1 | |
| -----------------------------------GGTCTCATCAAAGTATGGAGTG---------------------------------------- | 22 | 1 | |
| ----------------------------------AGGTCTCATCAAAGTATGGA------------------------------------------- | 20 | 1 | |
| -----------------------------------GGTCTCATCAAAGTATGG-------------------------------------------- | 18 | 1 | |
| --------------------------------------------------TGGAGTGGGTAGTGAGGGGAGA------------------------- | 22 | 1 | |
| ------------------------------------------TCAAAGTATGGAGTGGGTAG----------------------------------- | 20 | 1 | |
| ----------------------GCTGCATGACCCAGGTCTCA------------------------------------------------------- | 20 | 1 | |
| rat | ggtttaggatggtttaggaataGCTGCATGACCCAGGTCTCATCAAAGTATGGAGTGGGTAGTGAGGGGAGAtggaccagggcttcctcaagatgcc | ||
| ************************************************************************************************* | |||
| rat | (((..((((.((((..((.((..((.(((.(((((..((.(((......))))).))))).)))...))..))...))..))))))))......))) | 0.730 -21.20 |
| rat | chromosome:7:116619733:116619829:-1 | intergenic |
sblock10092 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.046 | no | no | 0.41/0.58 | 19/22/0.80 | 1.5 0.0 0.0 | 2.5 0.0 0.0 | 2 2 1 | 0 0 0 | 2 1 1 | 0 0 0 | 10 21 10 | -4 0 9 | 5arm_loop 3arm 3arm | 1 1 1 | nd nd nd | 0.16 0.40 0.50 | 1 6 5 | 5 | 2 | 1 | -3 |
| reads | miRBase family seed | |||
| seed | ------------------------------------GCCACCA--------------------------------- | 2 | novel | |
| seed | ---------------------------------------------GUGCUGU------------------------ | 1 | novel | |
| seed | -----------GGAGCCA---------------------------------------------------------- | 1 | novel | |
| seed | --------------GCCAGAC------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| -----------------------------------TGCCACCAATGTGCTGTATG--------------------- | 20 | - | 2 | |
| ----------TGGAGCCAGACTTGTTGGC----------------------------------------------- | 19 | - | 1 | |
| -------------AGCCAGACTTGTTGGCAGAGG------------------------------------------ | 21 | 1 | - | |
| --------------------------------------------TGTGCTGTATGGCCCTATAAAA---------- | 22 | - | 1 | |
| rat | cagaagggaaTGGAGCCAGACTTGTTGGCAGAGGaTGCCACCAATGTGCTGTATGGCCCTATAAAAtccctgaatg | |||
| **************************************************************************** | ||||
| rat | ((..(((((((((.((((.(((((.(((((.....))))).)))......)).)))).))))....)))))...)) | 0.990 -23.70 | ||
| rat | chromosome:6:122562620:122562695:-1 | intergenic |
sblock10699 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.272 | no | no | 0.52/0.55 | 20/23/1.00 | 2.0 0.0 | 3.5 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 20 36 | 12 -1 | 5arm 3arm | 9 9 | nd nd | 0.30 0.30 | 2 2 | 3 | 2 | -15 | -18 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------CAAUGUG------------------------------------------------ | 1 | novel | |
| seed | ---------------------GCAAUGG------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | -------------------------UGGCAGG-------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| --------------------AGCAATGGCAGGCATGGAAG------------------------------------------------------------------------------ | 20 | - | 1 | |
| --------------------------------------------------------------TCAATGTGTCAGGGCAGCAG------------------------------------ | 20 | 1 | - | |
| ------------------------ATGGCAGGCATGGAAGCACTTCT----------------------------------------------------------------------- | 23 | - | 1 | |
| rat | ctcatcttgggacaatgtaaAGCAATGGCAGGCATGGAAGCACTTCTtcccacactgtggccTCAATGTGTCAGGGCAGCAGgcccatgttctccaagggctggactccaaagttggg | |||
| ********************************************************************************************************************** | ||||
| rat | ((((.(((.(((....((..(((..(((..(((((((..((.((.((.(((((((..((....))..))))..))).)).)))))))))))..)))...)))..))))).))).)))) | 0.980 -36.60 | ||
| rat | chromosome:7:18800292:18800409:-1 | intergenic |
sblock11684 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.179 | no | no | 0.42/0.59 | 19/22/0.75 | 0.0 1.4 | 0.0 1.7 | 1 7 | 0 0 | 1 2 | 0 0 | 16 16 | -2 -7 | 5arm_loop 3arm | 1 1 | nd nd | 0.32 0.30 | 3 2 | 8 | 2 | 0 | -3 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------AAAUCUU---------------------------------- | 4 | novel | |
| seed | -----------------CAGGGCA------------------------------------------------------------ | 1 | novel | |
| seed | ------------------------------------------GAAAUCU----------------------------------- | 1 | novel | |
| seed | ----------------------------------------GGGAAAU------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------UUGACUC---------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------------------------------GAAATCTTTGACTCAGCAG----------------------- | 19 | - | 2 | |
| ------------------------------------------GAAATCTTTGACTCAGCAGCAG-------------------- | 22 | - | 1 | |
| ------------------------------------------------TTTGACTCAGCAGCAGCTGT---------------- | 20 | - | 1 | |
| ---------------------------------------TGGGAAATCTTTGACTCAGCAG----------------------- | 22 | 1 | - | |
| -----------------------------------------GGAAATCTTTGACTCAGCAG----------------------- | 20 | - | 1 | |
| ------------------------------------------GAAATCTTTGACTCAGCAGCA--------------------- | 21 | - | 1 | |
| ----------------GCAGGGCATCTTGAGGAGGACT---------------------------------------------- | 22 | - | 1 | |
| rat | gagactccaggtttctGCAGGGCATCTTGAGGAGGACTgTGGGAAATCTTTGACTCAGCAGCAGCTGTagaggactggcgcttg | |||
| ************************************************************************************ | ||||
| rat | (((...((((..((((((((.((...((((((((((..........)))))..)))))..))..))))))))..))))..))). | 0.890 -25.70 | ||
| rat | chromosome:8:57737516:57737599:-1 | intergenic |
sblock11719 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.137 | no | no | 0.42/0.57 | 20/24/1.00 | 0.0 3.0 | 0.0 1.0 | 1 2 | 0 0 | 1 1 | 0 0 | 0 15 | 5 -22 | 5arm 3arm_loop | 1 1 | nd nd | 0.29 0.50 | 3 7 | 3 | 2 | -8 | -15 |
| reads | miRBase family seed | |||
| seed | -------------------------------AGAAACC--------------------------- | 1 | novel | |
| seed | -------------------------CAGAAGA--------------------------------- | 1 | novel | |
| seed | -GCAACUG--------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| GGCAACTGTGAGGGTCATGTG-------------------------------------------- | 21 | 1 | - | |
| ------------------------------GAGAAACCCACAAAAGAGAG--------------- | 20 | - | 1 | |
| ------------------------TCAGAAGAGAAACCCACAAAAGAG----------------- | 24 | - | 1 | |
| rat | GGCAACTGTGAGGGTCATGTGgctTCAGAAGAGAAACCCACAAAAGAGAGgccttaaagaaggct | |||
| ***************************************************************** | ||||
| rat | (((..((...((((((.(((((.(((......)))..))))).......))))))..))...))) | 0.580 -14.50 | ||
| rat | chromosome:8:57750797:57750861:-1 | intergenic |
sblock1951 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.057 | no | no | 0.45/0.55 | 20/23/1.00 | 0.0 2.7 | 0.0 4.3 | 1 3 | 0 0 | 1 2 | 0 0 | 8 13 | 12 -18 | 5arm 3arm | 1 1 | nd nd | 0.68 0.27 | 8 3 | 4 | 3 | 0 | -9 |
| reads | miRBase family seed | ||||
| seed | ---------UGAAAUG----------------------------------------------------------------- | 1 | miR-203 | ||
| seed | -------------------------------------------GACACCA------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------CCACGUG--------------------------- | 1 | novel | ||
| seed | -----------------------------------------GUGACAC--------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S1 | |||
| ----------------------------------------------ACCACGTGTATGCTAGGAATGT------------- | 22 | 1 | - | - | |
| ----------------------------------------GGTGACACCACGTGTATGCT--------------------- | 20 | - | - | 1 | |
| --------CTGAAATGTACTAACCCACCCT--------------------------------------------------- | 22 | - | 1 | - | |
| ------------------------------------------TGACACCACGTGTATGCTAGGAA---------------- | 23 | - | - | 1 | |
| rat | gccaaggtCTGAAATGTACTAACCCACCCTtacatactgtGGTGACACCACGTGTATGCTAGGAATGTaccccaccagggc | ||||
| ********************************************************************************* | |||||
| rat | (((..(((.......((((........(((..((((((((((.....))))).)))))..)))...))))...)))..))) | 0.790 -22.70 | |||
| rat | chromosome:1:128302364:128302444:1 | intergenic |
sblock1954 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.076 | no | no | 0.40/0.57 | 20/21/1.00 | 0.0 1.5 | 0.0 2.0 | 2 2 | 0 0 | 1 1 | 0 0 | 14 0 | -3 6 | 5arm_loop 3arm | 1 1 | nd nd | 0.57 0.30 | 8 2 | 4 | 1 | 12 | 11 |
| reads | miRBase family seed | ||
| seed | ---------------CUCUCUU---------------------------------------------- | 2 | novel |
| seed | ------------------------------------------------AGAGAAA------------- | 1 | novel |
| seed | ---------------------------------------------UUCAGAG---------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------TCTCTCTTCTCCCCTGCACAG--------------------------------- | 21 | 2 | |
| -----------------------------------------------CAGAGAAACACTCCTCAAGGA | 21 | 1 | |
| --------------------------------------------TTTCAGAGAAACACTCCTCA---- | 20 | 1 | |
| rat | tctggaacaggcttTCTCTCTTCTCCCCTGCACAGctttgcagtTTTCAGAGAAACACTCCTCAAGGA | ||
| ******************************************************************** | |||
| rat | (((.((..((..(((((((........(((((......))))).....)))))))..))..)).))). | 0.900 -14.22 |
| rat | chromosome:1:128303590:128303657:1 | intergenic |
sblock4351 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.204 | no | no | 0.40/0.48 | 19/24/0.88 | 2.5 3.5 1.5 | 0.0 2.0 1.5 | 2 4 2 | 0 0 0 | 1 2 1 | 0 0 0 | 34 25 6 | -1 3 26 | 5arm_loop 3arm 3arm | 1 1 1 | nd nd nd | 0.33 0.35 0.30 | 4 6 3 | 8 | 2 | 7 | 12 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------GGUAGAU-------------------------------------------- | 2 | novel | |
| seed | -------------------------------------------------------------------------GCAAGGU------------------------------------- | 2 | novel | |
| seed | ----------------------------------------GUCAUUU---------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------GGCUUGU--------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------------------------UCUGAAC--------------------- | 1 | novel | |
| seed | --------------------------------------------------------------------------------------------GAACAGU------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| -----------------------------------------------------------------GGGTAGATGCAAGGTTACACCAA----------------------------- | 23 | - | 2 | |
| ------------------------------------------------------------------------TGCAAGGTTACACCAATTCT------------------------- | 20 | 1 | 1 | |
| ---------------------------------------TGTCATTTTCTCTGTTCCC----------------------------------------------------------- | 19 | - | 1 | |
| ----------------------------------------------------------------------------------------TTCTGAACAGTGTTGAGGTT--------- | 20 | - | 1 | |
| ----------------------------------TGGCTTGTCATTTTCTCTGTTCCC----------------------------------------------------------- | 24 | - | 1 | |
| -------------------------------------------------------------------------------------------TGAACAGTGTTGAGGTTGAG------ | 20 | - | 1 | |
| rat | tcagtttccccagccacaggcactcatgcacactTGGCTTGTCATTTTCTCTGTTCCCccaaggtGGGTAGATGCAAGGTTACACCAATTCTGAACAGTGTTGAGGTTGAGggctga | |||
| ********************************************************************************************************************* | ||||
| rat | ((((...((((((((...((((((....((...((((((((.(((((.(((....((.....)).))).)))))))))......))))...))...))))))..))))).))))))) | 0.540 -32.40 | ||
| rat | chromosome:15:227539:227655:-1 | intergenic |
sblock5032 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.018 | no | no | 0.41/0.58 | 19/22/0.75 | 0.0 0.0 2.0 | 0.0 0.0 2.5 | 1 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 16 37 13 | 12 -8 9 | 5arm 5arm_loop 3arm | 1 3 3 | nd nd nd | 0.25 0.68 0.18 | 2 9 2 | 4 | 1 | 0 | 19 |
| reads | miRBase family seed | ||
| seed | --------------------------------------ACCUGUG------------------------------------------------------------ | 1 | novel |
| seed | -------------------------------------------------------------------GACUGAG------------------------------- | 1 | novel |
| seed | -----------------GUGAAGU--------------------------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------------------------------------------------GAGUCUU--------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------TACCTGTGGGGGCAGAAAC------------------------------------------------- | 19 | 1 | |
| ----------------TGTGAAGTCTTGAGCCTCAG--------------------------------------------------------------------- | 20 | 1 | |
| ----------------------------------------------------------------------TGAGTCTTGACTTTGGAAAGTG------------- | 22 | 1 | |
| ------------------------------------------------------------------TGACTGAGTCTTGACTTTGGA------------------ | 21 | 1 | |
| rat | taggcctgagctagatTGTGAAGTCTTGAGCCTCAGcTACCTGTGGGGGCAGAAACaccctgctcaTGACTGAGTCTTGACTTTGGAAAGTGgctgatgaggcct | ||
| ********************************************************************************************************* | |||
| rat | .((((((.(((((..((.(((((((..(((.(((((......((((((.........))))))......))))).)))))))))).))..)))))....)))))) | 0.870 -38.90 |
| rat | chromosome:17:17534743:17534847:-1 | intergenic |
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