other hairpins
novel_multiarm_DicerNOK_5varHIGH_loopOverlap (23 loci)
sblock8415 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.210 | no | no | 0.59/0.74 | 19/22/0.75 | 2.0 0.0 0.0 | 2.0 0.0 0.0 | 2 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 9 38 14 | 18 -9 19 | 5arm 5arm_loop_3arm 3arm | 2 2 2 | nd nd nd | 0.20 0.64 0.26 | 3 5 3 | 4 | 3 | 1 | -1 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------CCUGAGG------------------------------------------------------------- | 1 | novel | ||
| seed | --------------CCAAGCU-------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------GUAUCCA------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ---------------------------------------------------------------------------CAGUGGG------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T4S1 | T4S2 | T5S2 | |||
| ---------TGTATCCAAGCTGGGACCCC------------------------------------------------------------------------------ | 20 | 1 | - | - | |
| --------------------------------------TCCTGAGGGATGTCCACACAGC----------------------------------------------- | 22 | - | 1 | - | |
| --------------------------------------------------------------------------GCAGTGGGCAGCTCCCTGG-------------- | 19 | - | - | 1 | |
| -------------TCCAAGCTGGGACCCCTGCC-------------------------------------------------------------------------- | 20 | 1 | - | - | |
| rat | tcagagcatTGTATCCAAGCTGGGACCCCTGCCgtgtaTCCTGAGGGATGTCCACACAGCaccgagtactccagGCAGTGGGCAGCTCCCTGGcaccaatgacctgg | ||||
| *********************************************************************************************************** | |||||
| rat | .(((..(((((...((((((((...((((((((..((((.....((..(((....)))...))..))))....))))).))))))))...)))...)))))..))). | 0.510 -36.40 | |||
| rat | chromosome:4:76989048:76989154:-1 | intergenic |
sblock9390 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.118 | no | no | 0.26/0.39 | 18/24/0.71 | 1.5 0.0 3.0 | 0.0 1.7 0.5 | 2 3 2 | 0 0 0 | 1 1 1 | 0 0 0 | 7 21 30 | 12 -2 -19 | 5arm 5arm 3arm_loop | 1 1 1 | nd nd nd | 0.39 0.22 0.37 | 8 2 5 | 7 | 2 | 0 | -26 |
| reads | miRBase family seed | |||
| seed | ----------------------AACUGUG--------------------------------------------------------------- | 3 | novel | |
| seed | --------------------------------------------AGGAAAU----------------------------------------- | 1 | novel | |
| seed | --------------------------------------GGAUCUA----------------------------------------------- | 1 | novel | |
| seed | --------UUUUUCC----------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------UUCCUUU-------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------TAACTGTGTATTCCTCTGGATCT------------------------------------------------ | 23 | - | 2 | |
| -------TTTTTTCCTTTGAATAACTGTGT-------------------------------------------------------------- | 23 | 1 | - | |
| -------------------------------------TGGATCTAGGAAATTTAGGAGAGT------------------------------- | 24 | - | 1 | |
| -------------------------------------------TAGGAAATTTAGGAGAGTG------------------------------ | 19 | - | 1 | |
| ----------TTTCCTTTGAATAACTGTGT-------------------------------------------------------------- | 20 | 1 | - | |
| ---------------------TAACTGTGTATTCCTCTG----------------------------------------------------- | 18 | - | 1 | |
| rat | cttttctTTTTTTCCTTTGAATAACTGTGTATTCCTCTGGATCTAGGAAATTTAGGAGAGTGacggtaacctggagaaacacttggggaaag | |||
| ******************************************************************************************** | ||||
| rat | (((((((((((((((........(((((.(((((..((((((.......))))))..)))))))))).....))))))).....)))))))) | 0.960 -22.02 | ||
| rat | chromosome:5:114521792:114521883:-1 | intergenic |
sblock987 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.631 | no | no | 0.48/0.68 | 21/25/0.86 | 0.0 0.0 2.0 0.0 | 0.0 0.0 0.0 0.0 | 2 2 2 1 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 9 19 28 22 | 7 -5 -16 -1 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.29 0.43 0.57 0.48 | 3 6 7 7 | 7 | 2 | -9 | -12 |
| reads | miRBase family seed | |||
| seed | ----------AGAUGGU------------------------------------------------------------------ | 2 | novel | |
| seed | --------------------GCAGCAG-------------------------------------------------------- | 2 | novel | |
| seed | ---------------------------------AGUGACC------------------------------------------- | 1 | novel | |
| seed | -----------------------------GCCCAGU----------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------CGCCACC----------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -------------------TGCAGCAGGAGCCCAGTGACCTC----------------------------------------- | 23 | 2 | - | |
| ---------TAGATGGTTTTGCAGCAGGAG----------------------------------------------------- | 21 | 2 | - | |
| ----------------------------------------TCGCCACCTTCCCTGCGTCTG---------------------- | 21 | 1 | - | |
| --------------------------------CAGTGACCTCGCCACCTTCCC------------------------------ | 21 | - | 1 | |
| ----------------------------AGCCCAGTGACCTCGCCACCTTCCC------------------------------ | 25 | 1 | - | |
| rat | gatgccttgTAGATGGTTTTGCAGCAGGAGCCCAGTGACCTCGCCACCTTCCCTGCGTCTGcggcccgcctgcctctgcattg | |||
| *********************************************************************************** | ||||
| rat | (((((...((((.(((..((((((((((......(((....))).......)))))...))))).))).))))....))))). | 0.580 -23.32 | ||
| rat | chromosome:1:208478264:208478346:-1 | intergenic |
novel_multiarm_DicerNOK_bulgeHIGH (23 loci)
sblock10158 [novel_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.312 | no | no | 0.45/0.60 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 10 9 | 13 2 | 5arm 3arm | 1 1 | nd nd | 0.45 0.27 | 6 4 | 3 | 2 | -8 | -3 |
| reads | miRBase family seed | |||
| seed | -----------CCGGUUG-------------------------------------------------------------- | 2 | novel | |
| seed | --------------------------------------------------UUCCUCU----------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T3S1 | |||
| ----------TCCGGTTGTCCCAGATCCTG-------------------------------------------------- | 20 | 1 | 1 | |
| -------------------------------------------------CTTCCTCTCGGATTTGTTTTCC--------- | 22 | 1 | - | |
| rat | ttccagtgggTCCGGTTGTCCCAGATCCTGaaagctgaagggcagatgcCTTCCTCTCGGATTTGTTTTCCtgccttgga | |||
| ******************************************************************************** | ||||
| rat | .((((..((((..((......(((((((.((.((..(((.(((....)))))))).)))))))))....)).)))))))) | 0.460 -23.00 | ||
| rat | chromosome:6:127758123:127758202:-1 | intergenic |
sblock10380 [novel_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.269 | no | no | 0.42/0.50 | 19/24/0.88 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 3 1 4 | 0 0 0 | 2 1 1 | 0 0 0 | 11 20 20 | 13 9 4 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.46 0.53 0.30 | 8 8 4 | 8 | 2 | -9 | -7 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------GCAAACC-------------------------------- | 4 | novel | |
| seed | ------------GACAAUG--------------------------------------------------------------------------------- | 3 | novel | |
| seed | ---------------------GAAGCCA------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ------------------------------------------------------------TGCAAACCCAGGTAGAAGAC-------------------- | 20 | - | 4 | |
| -----------TGACAATGTTGAAGCCACCTACTT----------------------------------------------------------------- | 24 | 1 | 2 | |
| --------------------TGAAGCCACCTACTTAAGG------------------------------------------------------------- | 19 | - | 1 | |
| rat | ccaggaagggcTGACAATGTTGAAGCCACCTACTTaagggcacagcggaatgatggctgcTGCAAACCCAGGTAGAAGACgggtcatggcacctctctgc | |||
| **************************************************************************************************** | ||||
| rat | .(((..(((((((((..((((........((((((..(((..((((((........))))))....)))))))))..)))).))))..)).)))..))). | 0.550 -30.40 | ||
| rat | chromosome:6:122587627:122587726:1 | intergenic |
sblock11157 [novel_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.483 | no | no | 0.41/0.45 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 3 | 0 0 | 1 1 | 0 0 | 0 9 | 15 0 | 5arm 3arm | 4 8 | nd nd | 0.59 0.30 | 8 4 | 4 | 1 | 0 | -20 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------GAGAACU--------------------- | 3 | miR-146a/146b |
| seed | -ACAAAGA------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------------------------------TGAGAACTTGAGAGCTTGGA--------- | 20 | 3 | |
| TACAAAGACCCTGGAAGAATTG---------------------------------------------------- | 22 | 1 | |
| rat | TACAAAGACCCTGGAAGAATTGctaagtgagtcttcacatattacTGAGAACTTGAGAGCTTGGAatagctggg | ||
| ************************************************************************** | |||
| rat | .........(((((....(((.((((((((((..(((........)))..))))....)))))))))..))))) | 0.910 -13.30 |
| rat | chromosome:7:17174299:17174372:1 | intergenic |
sblock11392 [novel_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.151 | no | no | 0.48/0.55 | 20/23/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 2 1 | 0 0 0 | 1 2 1 | 0 0 0 | 31 22 12 | 0 15 22 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.55 0.35 0.30 | 4 4 4 | 4 | 2 | 14 | 14 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------GCCUAGU---------------------------------- | 2 | novel | |
| seed | --------------------------------GGGAGGA---------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------------AGGGGGA--------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| -------------------------------------------------------------------------TGCCTAGTAGGGGGAACAGT---------------------- | 20 | 1 | 1 | |
| --------------------------------------------------------------------------------TAGGGGGAACAGTTTCAGGTACT------------ | 23 | - | 1 | |
| -------------------------------TGGGAGGAACCAACTATACC---------------------------------------------------------------- | 20 | - | 1 | |
| rat | tccaccagaagtaaacatgagttctcctttaTGGGAGGAACCAACTATACCtggcattgggagaggatgtgtaTGCCTAGTAGGGGGAACAGTTTCAGGTACTattggaaaagga | |||
| ******************************************************************************************************************* | ||||
| rat | (((.((((.((((....((((((((((((..((((....((...((...((.......))...))...)).....))))..)))))))))....)))..)))).))))....))) | 0.630 -29.90 | ||
| rat | chromosome:7:112755832:112755946:1 | intergenic |
sblock11803 [novel_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.469 | no | no | 0.32/0.57 | 19/24/0.88 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 | 1 4 1 1 1 | 0 0 0 0 0 | 1 1 1 1 1 | 0 0 0 0 0 | 11 22 36 32 15 | 19 6 -7 4 26 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.23 0.33 0.39 0.50 0.42 | 4 4 3 5 3 | 8 | 3 | -5 | -7 |
| reads | miRBase family seed | ||||
| seed | -----------------------AACAAGA------------------------------------------------------------------------------------- | 4 | novel | ||
| seed | ------------------------------------------------------------CCCAUCU------------------------------------------------ | 1 | novel | ||
| seed | ------------AGCAAAC------------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ----------------------------------------------------------------------------------CCCUUUG-------------------------- | 1 | novel | ||
| seed | -------------------------------------ACCACCA----------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T3S2 | T5S1 | |||
| ----------------------TAACAAGAGACATTTACCACCAAA--------------------------------------------------------------------- | 24 | - | - | 4 | |
| -----------TAGCAAACATTTAACAAGAGAC---------------------------------------------------------------------------------- | 22 | - | - | 1 | |
| ------------------------------------TACCACCAAATGGCAGGTCCTGG-------------------------------------------------------- | 23 | 1 | - | - | |
| ---------------------------------------------------------------------------------CCCCTTTGTTGTTGATGGC--------------- | 19 | - | 1 | - | |
| -----------------------------------------------------------TCCCATCTTCTGTGGAACTTGTCC-------------------------------- | 24 | - | - | 1 | |
| rat | ggtgggttagttagcaaacattTAACAAGAGACATTTACCACCAAAtggcaggtcctggtcccatcttctgtggaacttgtcccctttgttgttgatggcatctcctggcctcca | ||||
| ******************************************************************************************************************* | |||||
| rat | ((.(((((((..((....(((((((((((.((((....((((...(((((((...)))...)))).....))))....))))...)))))))..))))....)).))))))))). | 0.510 -26.90 | |||
| rat | chromosome:8:72073367:72073481:-1 | intergenic |
sblock12079 [novel_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.507 | no | no | 0.65/0.75 | 20/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 5 10 | 9 18 | 5arm 3arm | 1 1 | nd nd | 0.29 0.60 | 4 5 | 2 | 2 | 7 | 0 |
| reads | miRBase family seed | |||
| seed | ------CGCGCCA------------------------------------------------------------------------------ | 1 | novel | |
| seed | --------------------------------------------------------------CUAGGGC---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| -----CCGCGCCACGCATGCGCACTGCAG-------------------------------------------------------------- | 24 | - | 1 | |
| -------------------------------------------------------------GCTAGGGCGATGGGCCTACT---------- | 20 | 1 | - | |
| rat | cgccgCCGCGCCACGCATGCGCACTGCAGccgcctgcttggctagcagccaccggtcgcggGCTAGGGCGATGGGCCTACTgtgtgcggcg | |||
| ******************************************************************************************* | ||||
| rat | ((((((((((((.(((....((.((((.((((.(((((.....)))))....)))).))))))....)))...))).....))).)))))) | 0.430 -42.50 | ||
| rat | chromosome:8:83081998:83082088:1 | intergenic ## {SimpF: -1 Eponine} |
sblock12290 [novel_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.041 | no | no | 0.50/0.63 | 19/22/0.83 | 0.0 0.0 | 0.0 0.2 | 1 5 | 0 0 | 1 2 | 0 0 | 14 6 | 20 25 | 5arm 3arm | 3 3 | nd nd | 0.26 0.38 | 4 5 | 6 | 2 | 10 | 13 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------------------GCAGAUG-------------------- | 5 | novel | |
| seed | ---------------CACCUGU------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------------------------------------------------------------------------TGCAGATGACCCTCTCTAGACA------ | 22 | 2 | 2 | |
| --------------TCACCTGTCACTGGGCACC------------------------------------------------------------------------------- | 19 | 1 | - | |
| ------------------------------------------------------------------------------------TGCAGATGACCCTCTCTAGAC------- | 21 | - | 1 | |
| rat | tcctaagtgaggctTCACCTGTCACTGGGCACCtgggaggctggaaaagctggcaggcctcagcaaagcagcccaggcttgtccTGCAGATGACCCTCTCTAGACAtgagga | |||
| **************************************************************************************************************** | ||||
| rat | ((((.((.((((..(((.((((....(((((((((((..(((......(((((......)))))..)))..))))))..))))).)))).))).)))).)).......)))) | 0.990 -42.10 | ||
| rat | chromosome:9:105031233:105031344:-1 | intergenic |
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